ID   AJ616722; SV 1; linear; mRNA; STD; VRL; 1634 BP.
XX
AC   AJ616722;
XX
DT   05-DEC-2003 (Rel. 78, Created)
DT   18-MAY-2006 (Rel. 87, Last updated, Version 2)
XX
DE   Vanilla mosaic virus partial mRNA for polyprotein (CI-6K2-NIa gene),
DE   isolate CI
XX
KW   6K2 protein; CI protein; CI-6K2-NIa gene; NIa-Pro protein; Nia-VPg protein;
KW   polyprotein.
XX
OS   Vanilla mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1634
RA   Farreyrol K.;
RT   ;
RL   Submitted (05-DEC-2003) to the INSDC.
RL   Farreyrol K., School of Biological Sciences, The University of Auckland,
RL   Private Bag 92019, Auckland, NEW ZEALAND.
XX
RN   [3]
RX   DOI; 10.1007/s00705-005-0680-0.
RX   PUBMED; 16421638.
RA   Farreyrol K., Pearson M.N., Grisoni M., Cohen D., Beck D.;
RT   "Vanilla mosaic virus isolates from French Polynesia and the Cook Islands
RT   are Dasheen mosaic virus strains that exclusively infect vanilla";
RL   Arch. Virol. 151(5):905-919(2006).
XX
DR   MD5; d3cccd1803472015b76e2bd92667f459.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1634
FT                   /organism="Vanilla mosaic virus"
FT                   /host="Vanilla tahitensis"
FT                   /isolate="CI"
FT                   /mol_type="mRNA"
FT                   /country="Cook Islands"
FT                   /db_xref="taxon:186373"
FT   CDS             <1..>1634
FT                   /codon_start=1
FT                   /gene="CI-6K2-NIa"
FT                   /product="polyprotein"
FT                   /db_xref="GOA:Q708F7"
FT                   /db_xref="InterPro:IPR001730"
FT                   /db_xref="InterPro:IPR009003"
FT                   /db_xref="InterPro:IPR013648"
FT                   /db_xref="UniProtKB/TrEMBL:Q708F7"
FT                   /protein_id="CAE83574.1"
FT                   /translation="GSMHPEVHKLLKGFKLRESEMLLNKLAIPNQYVSQWISVKEYDRL
FT                   GIKIQCPEDTRIPFYARGIPDTLFGHLWEAVQIFKSDAGFGRLSTVNASKISYTLSTDP
FT                   HAIPRTIAIIDHLLSEEMIKKDHFDTIGSTVTGYSFSLTGXVEGIRKRYLKDFSIENIA
FT                   TLQQAKAQLLDINTRHINFSNYSDVADLGVLRAVQFQSRNEVCKFLGLKGKWDGSKFTN
FT                   DLIVGAMTLLGGGWLIYEYFSRTMRDPVVTQGKKRQIQKLKFRDARDRKLGREIYCDDN
FT                   TMEHTFGEAYTKKGKQKGSTHTKGMGKKNKNFVHIYGVEPENYSFIRFVDPLTGYTLDE
FT                   NPRADMQLIQEEIGKIRKELINGGELEPQAIYSRPGIEAYFINNNATEALKVDLTPHRP
FT                   TLLQLNSNAIAGFPERENELRQTGQPVKIYKELXPKANEYVAMEGKSVYKGLRDYNSIA
FT                   TTVCHISNRSNGHNMSLYGIGYGSVVITNSHLFKQNNGTITINTWHGEFIIKNSTQLKI
FT                   HHIIGKDMILIQMPKDFPPFARKSQFRG"
FT   mat_peptide     <1..600
FT                   /product="CI protein"
FT   mat_peptide     601..759
FT                   /product="6K2 protein"
FT   mat_peptide     760..1329
FT                   /product="NIa-VPg protein"
FT   mat_peptide     1330..>1634
FT                   /product="NIa-Pro protein"
XX
SQ   Sequence 1634 BP; 539 A; 316 C; 365 G; 412 T; 2 other;
     ggctcaatgc accctgaggt tcacaaattg ttaaaaggat tcaaactcag ggagtctgaa        60
     atgttgctca ataaactcgc aatacctaac caatatgtga gtcagtggat atctgtgaaa       120
     gaatatgatc ggttaggtat taagatacag tgccctgaag acactcgcat acctttttat       180
     gcgcgaggca taccagatac gcttttcggg catttatggg aagctgttca aatatttaaa       240
     agtgatgctg gttttgggcg attatcgact gtgaatgcca gtaaaattag ctacacacta       300
     agtactgatc cacatgccat tcccagaaca attgctatta ttgaccatct actatctgag       360
     gagatgataa agaaggatca ttttgacact attgggtcaa ctgtaactgg ttattccttc       420
     tcattaactg ggrtagtaga aggaattaga aagcgatatt tgaaggattt ttcaattgaa       480
     aacatcgcca cccttcaaca agccaaggca cagttgttgg atatcaatac cagacacatc       540
     aacttttcta actattcaga tgtagctgac cttggcgtct tacgagccgt gcagttccaa       600
     agcaggaatg aagtgtgtaa atttttgggt ttgaagggta aatgggatgg cagtaagttt       660
     actaatgatt tgattgtagg agctatgact ttactaggtg gtgggtggtt aatttatgaa       720
     tatttttcgc gcactatgcg cgacccggta gtgacgcaag ggaagaagcg tcaaattcaa       780
     aagctcaaat tccgagatgc acgagatcgg aagcttgggc gggaaatata ctgtgatgac       840
     aacacgatgg aacatacctt tggtgaagca tataccaaga agggtaagca gaaaggaagc       900
     acacacacca aaggtatggg gaagaagaac aaaaatttcg tgcacatata cggcgtggag       960
     ccagagaatt atagtttcat acgctttgtt gatcctctca ctggctacac acttgatgaa      1020
     aatccccggg cggacatgca gctcattcaa gaagagatag gaaaaattcg taaggagctc      1080
     ataaacggag gggagttgga accccaagcc atctacagtc ggccaggaat cgaggcatat      1140
     ttcataaaca ataatgccac agaggcattg aaggtcgact taacaccaca caggcccaca      1200
     ttattgcagc tgaactctaa tgcaattgct gggttcccag aaagagaaaa tgaactcagg      1260
     cagacaggtc aacccgtaaa aatttataaa gaattggygc ctaaagcaaa tgaatatgtg      1320
     gctatggagg gcaagtcagt ctacaaggga ctacgtgatt ataatagtat agccacaaca      1380
     gtttgccaca tctcaaatag atccaatggg cacaatatgt ccctatatgg cattggctat      1440
     ggatcagttg tgattacgaa cagtcacctc ttcaagcaga ataacggcac aatcacaatc      1500
     aatacatggc atggtgagtt cataattaaa aattcaactc aactgaaaat tcaccatatc      1560
     atcgggaaag acatgattct aatccagatg ccaaaagatt ttccgccatt cgcacgcaaa      1620
     tcacaattta gagg                                                        1634
//