ID   AJ616721; SV 1; linear; mRNA; STD; VRL; 1734 BP.
XX
AC   AJ616721;
XX
DT   05-DEC-2003 (Rel. 78, Created)
DT   18-MAY-2006 (Rel. 87, Last updated, Version 2)
XX
DE   Vanilla mosaic virus partial mRNA for polyprotein (NIb-CP gene), isolate
DE   CI-NAT
XX
KW   coat protein; NIb-CP gene; polymerase; polyprotein.
XX
OS   Vanilla mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1734
RA   Farreyrol K.;
RT   ;
RL   Submitted (04-DEC-2003) to the INSDC.
RL   Farreyrol K., School of Biological Sciences, The University of Auckland,
RL   Private Bag 92019, Auckland, NEW ZEALAND.
XX
RN   [3]
RX   DOI; 10.1007/s00705-005-0680-0.
RX   PUBMED; 16421638.
RA   Farreyrol K., Pearson M.N., Grisoni M., Cohen D., Beck D.;
RT   "Vanilla mosaic virus isolates from French Polynesia and the Cook Islands
RT   are Dasheen mosaic virus strains that exclusively infect vanilla";
RL   Arch. Virol. 151(5):905-919(2006).
XX
DR   MD5; a058db2d5f4708adc9739147d4ff992d.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1734
FT                   /organism="Vanilla mosaic virus"
FT                   /host="Vanilla tahitensis"
FT                   /isolate="CI-NAT"
FT                   /mol_type="mRNA"
FT                   /country="Cook Islands"
FT                   /db_xref="taxon:186373"
FT   CDS             <1..1461
FT                   /codon_start=1
FT                   /gene="NIb-CP"
FT                   /product="polyprotein"
FT                   /db_xref="GOA:Q708F8"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:Q708F8"
FT                   /protein_id="CAE83573.1"
FT                   /translation="GNNSGQPSTVVDNTLMVVISVYYSCIKQGWTEFDISQRIIFYANG
FT                   DDIILAVQQEDETVLDTFQNSFAELGLNYDFSERTHRREDLWFMSHQAMKIGDVYIPKL
FT                   EPERIVSILEWDRSKEIMHRTEAICAAMIEAWGHTDLLQEIRKFYLWLLEKDEFKTLAS
FT                   EGKAPYIAETALKKLYTDETAQKSELQRYWEAFNFETTNKFDEVTMQAGDTVGDPPPPL
FT                   PPAPQIPEAPVVRDAPPTETGKGKGIVKDVNAGTSGTYSVPRLSKITQKMNLPLVKGKC
FT                   ILNLNHLIEYKPEQRDIFNTRATHTQFEAWYNAVKREYELEDEQMHIVMNGFMVWCIDN
FT                   GTSPDINGAWVMMDGNEQIEYPLKPIVENAKPTLRQIMHHFSDAAEAYIELRNAEKPYM
FT                   PRYGLIRNLRDASLARYAFDFYEVNSKTPVRAREAVAQMKAAALSNVTTRLFGLDGNVS
FT                   TSSENTERHTAKDVTPNMHTLLGMSPPQ"
FT   mat_peptide     <1..630
FT                   /product="polymerase"
FT   mat_peptide     631..1458
FT                   /product="coat protein"
FT   3'UTR           1462..1717
FT                   /gene="NIb-CP"
FT   polyA_site      1718
FT                   /gene="NIb-CP"
XX
SQ   Sequence 1734 BP; 549 A; 340 C; 395 G; 449 T; 1 other;
     gggaataata gtgggcarcc atccactgtt gttgataaca ctttaatggt ggtgatttca        60
     gtatactact catgcatcaa gcaaggatgg acagagtttg atataagtca gagaatcatt       120
     ttctacgcaa atggtgatga tatcatactt gctgtccagc aagaggatga gactgtgttg       180
     gatactttcc agaactcttt tgcagaattg gggcttaatt atgatttttc tgagcgcacg       240
     catcgacgag aagatttatg gtttatgtcc catcaagcta tgaaaattgg ggatgtttat       300
     atccccaaac ttgaaccaga aagaattgtt tcaattcttg agtgggacag gagcaaggaa       360
     ataatgcata gaacggaagc catttgtgcg gctatgatag aagcatgggg ccacacagac       420
     ctcttgcaag aaattcgcaa attctatctg tggctgctag aaaaagatga atttaaaaca       480
     ttggcatccg agggaaaagc tccttacata gccgaaactg cgcttaagaa actgtataca       540
     gatgaaactg cacaaaagag tgaacttcag agatattggg aggcatttaa ttttgaaacc       600
     acaaataagt ttgatgaggt taccatgcag gcaggtgata cagttggaga tccaccacca       660
     ccacttccgc ctgcaccgca aatcccagaa gctccagtgg taagagatgc tcctcccaca       720
     gagactggaa agggtaaagg aattgtaaaa gatgtcaatg ctggcaccag tggaacatat       780
     tctgtacctc gattaagtaa gatcacacaa aagatgaact tgccactggt gaagggcaag       840
     tgcatactaa atttgaatca cttaatcgag tacaaaccag agcagcgtga tatcttcaat       900
     acaagagcta cccacacaca atttgaagcc tggtataatg ctgtcaagag ggagtatgaa       960
     ctggaagatg aacaaatgca cattgtaatg aatggcttca tggtttggtg catcgataat      1020
     ggaacatcac ctgatattaa tggggcttgg gtgatgatgg acggaaatga acaaattgaa      1080
     tacccattga aaccaattgt ggagaatgct aaaccaacct tacgtcagat tatgcatcac      1140
     ttttctgacg cagcagaggc atatatcgaa ctgaggaatg cggaaaaacc gtatatgcct      1200
     agatacggtt taattcgcaa tcttcgtgat gcaagtctcg cccgatatgc ttttgacttc      1260
     tacgaggtca actcaaagac accagttcgg gctagggagg cagtagcaca gatgaaggct      1320
     gcagccctat ccaacgttac cactaggctg tttggattgg atggtaacgt ttctacatct      1380
     agcgagaaca ctgagaggca cactgcaaag gacgtgacac caaatatgca caccttgctt      1440
     ggtatgtcac ctccgcagta aagacctggt aaacaggtca cagttatagt ctcgctgtcc      1500
     gtaattttat tttgcattta gcattgtatg tgtagtttta gtttgttcta tctactacac      1560
     tcactacaga gtggattacc accggtatgg agtggtgctg tgcaccctag atttcatatc      1620
     ctttatgcat tttaaaatta ctgagctact gcacttatgt caaaccgtaa gtgtgccaat      1680
     ggcacgatag gcaaggcact gagtgcacgg tgctcacaaa aaaaaaaaaa aaaa            1734
//