ID   AJ616720; SV 1; linear; mRNA; STD; VRL; 1782 BP.
XX
AC   AJ616720;
XX
DT   05-DEC-2003 (Rel. 78, Created)
DT   18-MAY-2006 (Rel. 87, Last updated, Version 2)
XX
DE   Vanilla mosaic virus partial mRNA for polyprotein (NIb-CP gene), isolate
DE   CI-AT
XX
KW   coat protein; NIb-CP gene; polymerase; polyprotein.
XX
OS   Vanilla mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1782
RA   Farreyrol K.;
RT   ;
RL   Submitted (04-DEC-2003) to the INSDC.
RL   Farreyrol K., School of Biological Sciences, The University of Auckland,
RL   Private Bag 92019, Auckland, NEW ZEALAND.
XX
RN   [3]
RX   DOI; 10.1007/s00705-005-0680-0.
RX   PUBMED; 16421638.
RA   Farreyrol K., Pearson M.N., Grisoni M., Cohen D., Beck D.;
RT   "Vanilla mosaic virus isolates from French Polynesia and the Cook Islands
RT   are Dasheen mosaic virus strains that exclusively infect vanilla";
RL   Arch. Virol. 151(5):905-919(2006).
XX
DR   MD5; 9a5b8fae4869401427f5db512027db0a.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1782
FT                   /organism="Vanilla mosaic virus"
FT                   /host="Vanilla tahitensis"
FT                   /isolate="CI-AT"
FT                   /mol_type="mRNA"
FT                   /country="Cook Islands"
FT                   /db_xref="taxon:186373"
FT   CDS             <1..1509
FT                   /codon_start=1
FT                   /gene="NIb-CP"
FT                   /product="polyprotein"
FT                   /db_xref="GOA:Q708F9"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:Q708F9"
FT                   /protein_id="CAE83572.1"
FT                   /translation="GNNSGQPSTVVDNTLMVVISVYYSCIKQGWTEFDISQRIIFYANG
FT                   DDIILAVQQEDETVLDTFQNSFAELGLNYDFSERTHRREDLWFMSHQAMKIGDVYIPKL
FT                   EPERIVSILEWDRSKEIMHRTEAICAAMIEAWGHTDLLQEIRKFYLWLLEKDEFKTLAS
FT                   EGKAPYIAETALKKLYTDETAQKSELQRYWEAFNFETTNKFDEVTMQAGDTVDAGQNEN
FT                   KTKTPATRGGDPPPPLPPAPQISEAPVVRDAPPTETGKGKGIVKDVNAGTSGTYSVPRL
FT                   SKITQKMNLPLVKGKCILNLNHLIEYKPEQRDIFNTRATHTQFEAWYNAVKREYELEDE
FT                   QMHIVMNGFMVWCIDNGTSPDINGAWVMMDGNEQIEYPLKPIVENAKPTLRQIMHHFSD
FT                   AAEAYIELRNAEKPYMPRYGLIRNLRDASLARYAFDFYEVNSKTPVRAREAVAQMKAAA
FT                   LSNVTTRLFGLDGNVSTSSENTERHTAKDVTPNMHTLLGMSPPQ"
FT   mat_peptide     <1..630
FT                   /product="polymerase"
FT   mat_peptide     631..1506
FT                   /product="coat protein"
FT   3'UTR           1510..1765
FT                   /gene="NIb-CP"
FT   polyA_site      1766
FT                   /gene="NIb-CP"
XX
SQ   Sequence 1782 BP; 570 A; 349 C; 406 G; 454 T; 3 other;
     gggaayaaya gtgggcarcc atccactgtt gttgataaca ctttaatggt ggtgatttca        60
     gtatactact catgcatcaa gcaaggatgg acagagtttg atataagtca gagaatcatt       120
     ttctacgcaa atggtgatga tatcatactt gctgtccagc aagaggatga gactgtgttg       180
     gatactttcc agaactcttt tgcagaattg gggcttaatt atgatttttc tgagcgcacg       240
     catcgacgag aagatttatg gtttatgtcc catcaagcta tgaaaattgg ggatgtttat       300
     atccccaaac ttgaaccaga aagaattgtt tcaattcttg agtgggacag gagcaaggaa       360
     ataatgcata gaacggaagc catttgtgcg gctatgatag aagcatgggg ccacacagac       420
     ctcttgcaag aaattcgcaa attctatctg tggctgctag aaaaagatga atttaaaaca       480
     ttggcatccg agggaaaagc tccttacata gccgaaactg cgcttaagaa actgtataca       540
     gatgaaactg cacaaaagag tgaacttcag agatattggg aggcatttaa ttttgaaacc       600
     acaaataaat ttgatgaggt taccatgcag gcaggtgata cagttgatgc aggccagaat       660
     gaaaataaaa caaaaactcc tgcaactaga ggcggagatc caccaccacc acttccgcct       720
     gcaccgcaaa tctcagaagc tccagtggta agagatgctc ctcccacaga gactggaaag       780
     ggtaaaggaa ttgtaaaaga tgtcaatgct ggcaccagtg gaacatattc tgtacctcga       840
     ttaagtaaga tcacacaaaa gatgaacttg ccactggtga agggcaagtg catactaaat       900
     ttgaatcact taatcgagta caaaccagag cagcgtgata tcttcaatac aagagctacc       960
     cacacacaat ttgaagcctg gtataatgct gtcaagaggg agtatgaact ggaagatgaa      1020
     caaatgcaca ttgtaatgaa tggcttcatg gtttggtgca tcgataatgg aacatcacct      1080
     gatattaatg gggcttgggt gatgatggac ggaaatgaac aaattgaata cccattgaaa      1140
     ccaattgtgg agaatgctaa accaacctta cgtcagatta tgcatcactt ttctgacgca      1200
     gcagaggcat atatcgaact gaggaatgcg gaaaaaccgt atatgcctag atacggttta      1260
     attcgcaatc ttcgtgatgc aagtctcgcc cgatatgctt ttgacttcta cgaggtcaac      1320
     tcaaagacac cagttcgggc tagggaggca gtagcacaga tgaaggctgc agccctatcc      1380
     aacgttacca ctaggctgtt tggattggat ggtaacgttt ctacatctag cgagaacact      1440
     gagaggcaca ctgcaaagga cgtgacacca aatatgcaca ccttgcttgg tatgtcacct      1500
     ccgcagtaaa gacctggtaa acaggtcaca gttatagtct cgctgtccgt aattttattt      1560
     tgcatttagc attgtatgtg tggttttagt ttgttctatc tactacactc actacagagt      1620
     gggttaccac cggtatggag tggtgctgtg caccctagat ttcatatcct ttatgcattt      1680
     taaaattact gagctactgc acttatgtca aaccgtaagt gtgccaatgg cacgataggc      1740
     aaggcactga gtgcacggtg ctcacaaaaa aaaaaaaaaa aa                         1782
//