ID   AJ616719; SV 1; linear; mRNA; STD; VRL; 1888 BP.
XX
AC   AJ616719;
XX
DT   05-DEC-2003 (Rel. 78, Created)
DT   18-MAY-2006 (Rel. 87, Last updated, Version 2)
XX
DE   Vanilla mosaic virus partial mRNA for polyprotein (NIb-CP gene), isolate FP
DE   (WP013)
XX
KW   NIb-CP gene; polymerase/coat protein.
XX
OS   Vanilla mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1888
RA   Farreyrol K.;
RT   ;
RL   Submitted (04-DEC-2003) to the INSDC.
RL   Farreyrol K., School of Biological Sciences, The University of Auckland,
RL   Private Bag 92019, Auckland, NEW ZEALAND.
XX
RN   [2]
RX   DOI; 10.1007/s00705-005-0680-0.
RX   PUBMED; 16421638.
RA   Farreyrol K., Pearson M.N., Grisoni M., Cohen D., Beck D.;
RT   "Vanilla mosaic virus isolates from French Polynesia and the Cook Islands
RT   are Dasheen mosaic virus strains that exclusively infect vanilla";
RL   Arch. Virol. 151(5):905-919(2006).
XX
DR   MD5; 73d5b201b66b8fea02088d5b71e4423f.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1888
FT                   /organism="Vanilla mosaic virus"
FT                   /host="Vanilla tahitensis"
FT                   /isolate="FP (WP013)"
FT                   /mol_type="mRNA"
FT                   /country="French Polynesia"
FT                   /db_xref="taxon:186373"
FT   CDS             <1..1614
FT                   /codon_start=1
FT                   /gene="NIb-CP"
FT                   /product="polyprotein"
FT                   /db_xref="GOA:Q708G0"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:Q708G0"
FT                   /protein_id="CAE83571.1"
FT                   /translation="YDISQRIIFYANGDDIILAVQQEDEVVLDTFQDSFAELGLNYDFS
FT                   ERTHQREDLWFMSHQAIKIGDVYIPKLEPERIVSILEWDRSKEIMHRTEAICAAMIEAW
FT                   GHTDLLREIRKFYLWLLEKDEFKTLASEGKAPYIAETALRKLYTDEAAQTSELQRYWEA
FT                   FNFEIANEFDEVIMQVNETVDVGQSGNKAKTPATGGGNTDNTTTGGGNNTTTGGGNSTT
FT                   TGGGNNTTTGGGNNTTTGGGNNTATGGGNNSTTSGGNTTPTTGGGNTTNTTPPAPKTTK
FT                   TPVVKDVTPTETGKDKEIVKDVNAGTSGTYSVPRLNKITHKMNLPLVKGKCILNLNHLI
FT                   EYKPEQRDIFNTRATHTQFEVWYNAVKKEYELDDEQMRIVMNGFMVWCIDNGTSPDING
FT                   AWVMMDGDDQIEYPLKPIVENAKPTLRQIMHHFSDAAEAYIELRNAEKPYMPRYGLIRN
FT                   LRDASLARYAFDFYEVNSKTPVRAREAVAQMKAAALSNVATRLFGLDGNVSTSSENTER
FT                   HTAKDVTPNMHTLLGVSPPQ"
FT   mat_peptide     <1..534
FT                   /product="polymerase"
FT   mat_peptide     535..1611
FT                   /product="coat protein"
FT   3'UTR           1615..1870
FT                   /gene="NIb-CP"
FT   polyA_site      1871
FT                   /gene="NIb-CP"
XX
SQ   Sequence 1888 BP; 609 A; 389 C; 438 G; 452 T; 0 other;
     tatgatataa gtcagagaat tattttctat gccaatggtg atgatatcat actcgctgtc        60
     caacaagagg atgaggttgt attggacact ttccaggatt cttttgcgga actagggctt       120
     aattacgatt tttctgagcg cacgcatcag cgagaagatt tatggttcat gtcccaccaa       180
     gctattaaaa ttggggacgt ttatatccct aaacttgaac cggagagaat tgtctcaata       240
     ctcgagtggg acaggagcaa agaaataatg catagaacag aagcaatatg cgctgccatg       300
     atagaagcat ggggccacac agaccttttg cgcgaaattc gcaagttcta tctatggctt       360
     cttgagaaag atgaattcaa aacacttgct tctgaaggaa aagctcctta cattgctgaa       420
     actgcgctca ggaaattgta cacagatgag gctgcacaaa caagtgaact tcaaagatac       480
     tgggaggcat tcaattttga aattgcaaat gagtttgatg aggtcattat gcaggtaaat       540
     gaaacagtgg acgtaggaca gagtggaaac aaagcaaaaa cacctgcaac aggtggaggt       600
     aatacagata acaccaccac gggtggtggg aacaacacca ccacaggtgg cggaaacagc       660
     accaccacgg gcggtgggaa taacaccacc acaggtggcg gtaacaacac taccacgggt       720
     ggtggaaaca acactgctac aggtggtgga aacaactcca ccacaagtgg aggtaacacc       780
     acaccaacca cgggtggggg caacaccaca aataccacac ctcctgcacc aaagaccact       840
     aaaactccag tagtaaaaga tgtgactccc acagaaactg gaaaggataa agagattgtc       900
     aaagatgtta acgctggcac tagtggaaca tactctgtac ctcgattaaa taagatcaca       960
     cataaaatga atttgccttt ggttaaaggt aaatgcattt tgaatctaaa tcatttaatt      1020
     gagtacaaac ctgagcagcg tgacatcttc aacacaagag caacccatac acaatttgaa      1080
     gtctggtata atgctgtcaa gaaggagtat gaacttgatg atgagcagat gcgcattgtg      1140
     atgaatggat ttatggtctg gtgcatcgat aatggaacat cacccgatat taacggggct      1200
     tgggtgatga tggacggaga tgatcaaatt gagtacccgt taaaacccat tgtggaaaat      1260
     gctaaaccga ccttgcgtca gatcatgcat cacttctctg acgcagcaga ggcatatatt      1320
     gaactaagaa atgcggagaa accgtacatg cctaggtacg gtttgattcg taatcttcgt      1380
     gatgcaagtc tcgctcggta cgcttttgat ttttatgaag ttaattcaaa aacaccggtg      1440
     cgagctaggg aggcagtagc acagatgaag gctgcagccc tatcaaacgt tgccactagg      1500
     ttgtttggat tggatggtaa cgtctccaca tcaagtgaga acactgagag gcatactgca      1560
     aaggacgtga caccgaatat gcacactcta cttggtgtgt cacctccaca gtgaaggcct      1620
     ggtaaacagg ccacagttac agtctcacta ttcgtatcct taatatgcat atggtactgt      1680
     atgtgtgaac atagtttgtt ctatttgctg cacttactac agagtggctt gccaccaata      1740
     tggagtggtg ctatgcaccc tatatttcat attctctatg catcttaaag ttactgagcc      1800
     actgcattta tgtcaaaccg caagtgcgcc tatggcgcgg taggtaagac actgagtgca      1860
     cggtgctcac aaaaaaaaaa aaaaaaaa                                         1888
//