ID AJ608931; SV 1; circular; genomic DNA; STD; VRL; 7024 BP. XX AC AJ608931; XX DT 25-NOV-2004 (Rel. 81, Created) DT 22-JAN-2005 (Rel. 82, Last updated, Version 2) XX DE Cacao swollen shoot virus ORF1, ORF2, ORF3, ORFX and ORFY XX KW ORF1; ORF2; ORF3; ORF4; ORFX; ORFY; polyprotein; KW nucleic acid-binding protein. XX OS Cacao swollen shoot virus OC Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; OC Ortervirales; Caulimoviridae; Badnavirus. XX RN [1] RP 1-7024 RA Muller E.; RT ; RL Submitted (25-NOV-2003) to the INSDC. RL Muller E., CIRAD, UMR BGPI, TA 41/K, Campus International de Baillarguet, RL 34398 Montpellier cedex 5, FRANCE. XX RN [2] RA Muller E., Sackey S.; RT "Four new full sequences of cacao swollen shoot virus : a PCR full length RT cloning strategy and a variability analysis"; RL Unpublished. XX RN [3] RA Muller E., Sackey S.; RT "Molecular variability analysis of five new complete cacao swollen RT shootvirus genomic sequences"; RL Arch. Virol. 50(1):53-66(2005). XX DR MD5; f26078d3498f33485a11913e92e13b34. DR EuropePMC; PMC5649073; 29052506. XX FH Key Location/Qualifiers FH FT source 1..7024 FT /organism="Cacao swollen shoot virus" FT /host="Theobroma cacao" FT /mol_type="genomic DNA" FT /country="Ghana:New Juaben" FT /db_xref="taxon:31559" FT CDS 294..725 FT /product="hypothetical protein" FT /note="ORF1" FT /db_xref="InterPro:IPR010746" FT /db_xref="UniProtKB/TrEMBL:Q5TJJ2" FT /protein_id="CAE76626.1" FT /translation="MSSRWENSIQEWYEKSHTANLEYLDLASTSKVTNNQLAHNLAVTF FT DRVNLGNRVFIKNLKQIQESILELNTRIDTVEVALKRLTKQFRENKPLSESEVKRLVEE FT IAQQPKIVEKQALEISQQLELKLEKVEKLLHKLDQWVGQ" FT CDS 722..1159 FT /product="nucleic acid binding protein" FT /note="ORF2" FT /db_xref="UniProtKB/TrEMBL:Q5TJJ1" FT /protein_id="CAE76627.1" FT /translation="MSESPSYQEALKEAEKIDPPAIGLTTSSGVTAVQGFRTVIKQNNV FT QICLLAAIADKLEELVQDQKKARKDKAKEVAIPEDLITKLQGLSIQEKGEAKVTRKPEP FT KGTLFGFKDPYKILAAEKAKITPKLVKEKKDESSKTATSNS" FT CDS 1125..6668 FT /product="polyprotein" FT /function="coat protein, RNaseH, RTase" FT /note="ORF3" FT /db_xref="GOA:Q5TJJ0" FT /db_xref="InterPro:IPR000477" FT /db_xref="InterPro:IPR001878" FT /db_xref="InterPro:IPR002156" FT /db_xref="InterPro:IPR018061" FT /db_xref="InterPro:IPR021109" FT /db_xref="InterPro:IPR036875" FT /db_xref="InterPro:IPR041373" FT /db_xref="UniProtKB/TrEMBL:Q5TJJ0" FT /protein_id="CAE76628.1" FT /translation="MSRARPQPPIPSVTSTISEQNREGPLYEDQIRDYRRSQRRIFNLR FT RNARRLRRSMMGSRYQETLEQEIDPQTTLRLSMQERARLVPAEVLYRSRRDTVHHRVYT FT HRSEESVLCVGGNQVDRAFIQPESLEQLQRTGMSFIHIGILQVRIQILHRQEEGTMALV FT VFRDNRWSGDQSIFAQMEIDLTKGSQLVFVIPDTMMTIGDFARNVQLSILTRGYENWQN FT GEANLLITRGMTGRLSNTPNVAFAYQIASATDYLASHGVKAIAGKKMNLQHLRNQQWIL FT RPPQADITPMQPRSVETRNLVDGSISIRFHDYEAATSTSRPHYNEEDEEVESETESEIR FT EHTVAVWIGEEEVPDQTGRKKVWEESSNGNGRFFRYYTPPPTSDEQIIATGWGSDDDYE FT DEIPPKWDESPDEEGSSKTTWDQEEKEEEDEYDPNIYRAYLQKEEDEWQEIAASLQEEM FT EMEYPRRRPQTETVFSETVDYTPPGDTLMTPVGYPPASSSRSTVTTPSRPPLFEGRVTH FT VPRFLKRDDYTEWWQLPSSQGTTGALFVMPKQIGLFHDVFSRWESITKNYVAAQSFTDP FT TEKMEFMENLLGETEKLTWIQWRMNYEAEYQQLLTQADGRQGTQNILSQIKRVFSLEDP FT ASGSTRIQDAAYRDLERLTCHNIKDIVQFLNDYGRLAAKSGRLFLGTELSEKLWMKMPP FT ELGNRMKEAFQKEYSGNEVGVFPRILFAYRYLEQECKDAAFKRSLKSLSFCKDMPLTGY FT YDKTPKYGMRKSKTYKGKPHASHARVEKRKHLIRNKKCKCYLCGDEGHFARECPNNKRD FT VKRVAIFEGINLPEGFDIVSVEEGEDDSDAIYSISENENGEELDAEVVQEKVFMMREED FT QSYWLGKTNHWTAMVRVSSQQYYCLHQWEHNKEITVVAHINCHFCKQPTQLRSRIHCPT FT CKLTSCFMCAPIYCNITVQQQPKPPTPFNTNTLLQQQAAYIQWLEGENQRLTEAVEFYK FT KEAADLRLEKELEKDRKDLEPKIQDRGKRVQILDPEVGPSDDEQIAYLEEDTVSRIIGH FT TVEEQQEVKKPVKRGNMLYNLDVVLLIPEVGRPIKVKAILDTGATTCCININSVPKTAI FT EQNTFLVQFRGINSTQSVDKKLKYGRMTISNHQFRIPYCYAFPLSLGDGIEMILGCNFI FT RGMYGGLRIEGHTITFYKNVTTIQTSLAAVMVGGTTTSELGEEGTEPIFEIEEETEEFD FT SEVHQQIVSHVAAQAQQQKLDPKLQQLMERLKDQGFIGENPMQHWAKNKILCRLDIKNP FT DLIIEDKPIKHLTPAMEKQFQKHVKALLDIGVIRPSKSKHRATAFIVESGTVIDPVTKK FT TIHGKERMVFNYKRLNDNTEKDQYSLPGIQTILKRVGNKKIFSKFDLKSGFHQVAMAEE FT SIPWTAFWVPQGLYEWLVMPFGLKNAPAVFQRKMDQCFKGTEEFIAVYIDDILVFSETM FT AEHTKHIGIMLTICQENGLVLSPNKICLAQREIEFLGTIISQGQMKLQPHVIKKIVNKA FT DMELETTRGLRSFLGLLNYARIYIPNLGKKLSPLYAKTSPTGEKKFNRQDWHLIKEIKD FT MVQKLPNLAIPPARCCIIIESDGCMEGWGAVCKWKLAKEDSRTTEKICAYASGKFGIIK FT STIDAEIFALIKALESFKIFYLDKKHLVVRTDCQAIVTFYNKTSTHKPSRIRWITFSDY FT ITGLGVQVTIEHINGKENQLADTLSRLVYTTWSQSQAHLPEEEEPEKSPHLSLAALAIP FT IAWPMTASYSKRRTSLLTGDSPWQQNKPSQRSSIASRSKQPEKHSWPYETYRAYCTSNE FT TIWPQLPHVTTGPVIDCQLPNKIRPHSTNMLA" FT CDS 2308..2583 FT /product="hypothetical protein" FT /note="ORFX" FT /db_xref="UniProtKB/TrEMBL:Q5TJI9" FT /protein_id="CAE76629.1" FT /translation="MMIMRMKSPQNGMKVLMKKDQVRQLGIRKKKKKKMNMIPTSIGLI FT YKRKKMSGKKSPPAYKKKWKWNIHGGGHRRRQYSLKQLTIHHLVTH" FT CDS 6308..6703 FT /product="hypothetical protein" FT /note="ORFY" FT /db_xref="UniProtKB/TrEMBL:Q5TJI8" FT /protein_id="CAE76630.1" FT /translation="MEPVPSSPAGGRRAGEVPTSQLSGASYPYSLAYDGLLQQKKDVIT FT HGRLTLATEQAISAQLYRIEEQAARKALMALRDLQGVLHFKRNYLAATATRDNWASDRL FT PAAQQDSAALDQHAGVINAIIEKAVQP" XX SQ Sequence 7024 BP; 2381 A; 1528 C; 1581 G; 1534 T; 0 other; tggtatcaga gcttggtttt agcaatggtc atgtccggct aagttagtca gactaggttc 60 agggaaagag tgaggtaacc gttaggcgtc aaaatactgt tccaaaatac tattcaccaa 120 accactaggg gtatcctgtt tatgtgaaaa agacgtaacc cagacggaaa gtacccatga 180 gggggaaaac ttggggaaaa ggtgatcaat aaacagaaac caaactattc ctcgtatgct 240 ctacggttgc agccacggct gaacctccgt atcagaaaag gaaaatttgg cgtatgtcta 300 gccgatggga aaatagtatc caggaatggt atgagaagtc tcacactgcc aaccttgagt 360 accttgacct agcctctacc agtaaagtga ccaacaacca actagctcat aacctcgcag 420 taacctttga tagagtcaac ttaggaaacc gagtcttcat taaaaacctt aaacaaatcc 480 aagagtctat cctagaacta aataccagaa tcgacactgt agaagtagcc ttgaagaggc 540 taaccaagca gttccgagaa aacaaaccac tgtctgaatc tgaagtaaag agactagtag 600 aagagatagc ccagcaaccc aaaattgttg agaaacaggc actggaaata tctcaacagt 660 tagaactcaa gttagaaaaa gtggaaaaac ttctacacaa gcttgaccag tgggttggtc 720 aatgagtgaa agtccctctt accaagaagc acttaaggaa gctgaaaaga tcgaccctcc 780 agcgattgga ttgaccacat ccagtggagt gactgcggtc caaggcttca ggaccgtcat 840 caaacaaaac aacgtccaga tttgcctact tgcggctata gcagacaaac ttgaagaact 900 ggtgcaagat cagaagaaag caagaaaaga caaggctaag gaggtagcca ttcctgagga 960 tcttatcaca aaactccaag ggttatccat ccaggagaaa ggtgaagcaa aggtcacaag 1020 aaaaccagag ccaaaaggaa cactgtttgg attcaaagat ccttacaaaa ttttggcagc 1080 agaaaaggct aagatcacac caaagcttgt aaaagaaaag aaggatgagt cgagcaagac 1140 cgcaacctcc aattcctagt gtgacatcta ccattagtga acagaacaga gaagggcctc 1200 tttatgagga tcaaatcaga gactacagaa ggagtcagag gaggatcttc aacctaagaa 1260 ggaatgccag aaggttgaga agatcaatga tggggtctag ataccaggag accctagaac 1320 aagaaattga tccacagaca acactgaggt tgtccatgca agaaagagcg cgattagtac 1380 cagctgaagt actgtacaga tcacgacgag acactgttca ccacagggtc tacacccatc 1440 gctctgagga atccgtccta tgtgtcggcg gaaatcaagt tgacagggcc tttattcagc 1500 ctgaaagttt agagcaactt cagaggactg gaatgtcttt tattcatata ggaatcctgc 1560 aagttaggat tcaaatcctg catcgtcaag aagaaggtac catggcttta gttgtcttcc 1620 gtgacaacag atggtctggg gaccagtcta tcttcgcaca aatggagata gatctaacta 1680 aaggcagcca gttggtattt gtcataccgg ataccatgat gacgatcgga gattttgccc 1740 ggaacgtaca actatcaatc ctcacacgag gatatgagaa ttggcaaaat ggagaagcta 1800 accttttaat cacacgtggc atgacaggac gactatccaa cacacctaat gtcgcctttg 1860 cctaccaaat tgccagcgcg acagattatc tggcaagcca cggagtaaaa gccatcgcag 1920 ggaaaaagat gaacttacaa cacctgcgaa atcaacagtg gattctacga ccaccgcaag 1980 ctgacatcac accgatgcaa ccaagatcgg tagaaaccag gaacctggta gatggcagca 2040 tttccatcag attccatgat tatgaggcag ccacctcaac atcaagaccc cattacaacg 2100 aggaagatga agaagtggag tctgaaacag aatctgaaat aagagaacac actgtagcag 2160 tctggattgg ggaagaagaa gttccagacc aaactggaag aaagaaagta tgggaagaat 2220 ccagtaatgg aaatggaagg ttcttccggt actacactcc tccaccaaca tctgatgaac 2280 aaatcatagc cactggttgg ggaagcgatg atgattatga ggatgaaatc cccccaaaat 2340 gggatgaaag tcctgatgaa gaaggatcaa gtaagacaac ttgggatcag gaagaaaaag 2400 aagaagaaga tgaatatgat cccaacatct atagggctta tttacaaaag gaagaagatg 2460 agtggcaaga aatcgccgcc agcttacaag aagaaatgga aatggaatat ccacggcgga 2520 ggccacagac ggagacagta ttctctgaaa cagttgacta tacaccacct ggtgacacac 2580 tgatgacacc tgtcggatat ccaccggcct cgtcatcaag atcaacagta acaacaccaa 2640 gtaggccccc tttatttgaa ggaagggtta cacacgtgcc aagattctta aaacgggatg 2700 actacacaga atggtggcaa ctaccatcat cccaaggcac aactggggca ttatttgtga 2760 tgcccaaaca aataggccta tttcatgatg tcttctccag atgggagtcc atcaccaaaa 2820 actatgttgc ggcccaaagt ttcacggacc caacagaaaa gatggagttc atggaaaact 2880 tacttggaga aacagaaaaa ctaacctgga tccaatggag aatgaattat gaggctgagt 2940 accagcagct gttaacccaa gctgatggac ggcaagggac ccagaatatc ttgtcccaaa 3000 ttaagagagt cttctctcta gaagaccccg cctcaggatc cacgaggata caagatgctg 3060 catacagaga ccttgaaaga ttgacctgcc acaacataaa agatatcgtt cagttcctga 3120 atgattatgg gcggttagca gcaaaaagtg ggcgactgtt tctaggaaca gagctcagtg 3180 aaaaactatg gatgaagatg ccaccagaac tagggaatcg catgaaggaa gcatttcaaa 3240 aggaatactc aggcaatgaa gtaggagtct tcccgcgtat cttgttcgcg tacagatact 3300 tagaacaaga atgcaaagat gcagcgttta agcgcagcct gaagtcgttg agtttctgta 3360 aggacatgcc gttgacaggt tactatgata aaacacccaa atacggcatg aggaagtcaa 3420 aaacttacaa aggaaagcca cacgcatcac atgcaagagt agaaaagaga aagcacttaa 3480 tcaggaataa aaagtgcaag tgctatctgt gtggagatga aggacatttt gccagagaat 3540 gccctaataa caaaagagat gtcaagagag tagccatttt tgaaggtatc aatcttcctg 3600 agggtttcga cattgtctca gtagaagaag gggaagatga ctcagatgct atttatagca 3660 tatctgagaa tgaaaatggg gaagaacttg acgcagaagt agtccaagag aaggtcttca 3720 tgatgcgaga agaagaccaa tcctactggc taggaaaaac aaatcactgg acagcaatgg 3780 tgcgagtcag cagccaacag tattattgct tgcaccaatg ggagcacaac aaggagatca 3840 cggtggtggc ccacatcaac tgccacttct gtaagcagcc cactcaactg aggagtcgaa 3900 tacactgtcc cacgtgtaaa ctcaccagct gcttcatgtg tgcccctatc tactgcaata 3960 taacggtcca acagcagcct aaaccgccta cgccattcaa caccaatacc ttgcttcaac 4020 aacaagcggc gtatatccaa tggttagaag gagaaaacca gcggttaaca gaggcagttg 4080 aattttataa aaaggaagct gcagatctaa ggctcgaaaa agaattggaa aaagatagaa 4140 aagatttaga gccaaaaata caagacaggg ggaaaagggt tcaaattctt gatccagaag 4200 taggaccctc tgatgatgaa caaatagcat atcttgagga agataccgtt agccgaatta 4260 tcggccatac tgtggaagag caacaagagg tcaaaaaacc agtcaaaagg gggaacatgt 4320 tatacaacct cgacgtggtt ttacttatcc ctgaagttgg aagacctatc aaggttaaag 4380 ctatccttga taccggcgca actacctgtt gcatcaacat caactctgtt cccaagacag 4440 caattgaaca gaacactttt ctggttcaat tcagaggcat taattccacg caatcagtgg 4500 ataaaaagct aaaatacggg cggatgacta ttagcaacca ccagttccgg atcccgtact 4560 gttatgcctt tcctctatct cttggagacg gaatagaaat gatcctcggg tgtaacttca 4620 tccgtggaat gtatggcggt ttgaggattg aaggtcacac aatcaccttc tacaaaaacg 4680 tcaccactat tcaaaccagc cttgctgctg taatggttgg tggtacaacc acttctgagt 4740 tgggggagga aggtactgaa cccatttttg aaattgaaga agaaacagaa gagtttgact 4800 cagaagtcca tcaacaaatt gtgagtcatg ttgcagccca agcccaacaa caaaaactag 4860 acccaaaact ccaacaacta atggaacggt taaaggatca gggctttatt ggggaaaatc 4920 cgatgcaaca ctgggctaaa aacaagatcc tgtgtagatt ggatatcaag aatccagatc 4980 ttatcataga agacaagccc attaaacact taacaccggc tatggagaag caattccaga 5040 agcatgtcaa agctctcctg gacattggtg ttatcaggcc tagcaagtca aaacacaggg 5100 ctacggcctt catagtagaa tcaggcactg ttattgatcc agtaacaaag aagaccatac 5160 acggcaaaga aagaatggtc tttaactaca aacgcctgaa tgacaatacg gagaaggatc 5220 aatactcgct acccggtata cagaccatcc tgaagcgagt aggcaacaaa aaaattttca 5280 gcaagtttga tttaaaatcg ggcttccatc aggttgccat ggcagaagag tccatccctt 5340 ggactgcttt ttgggtaccg cagggcctat acgagtggtt agttatgccc tttgggctca 5400 aaaacgctcc tgcagtattt caaagaaaaa tggaccaatg tttcaaaggc acagaagaat 5460 tcatagctgt gtatattgat gacatcttgg tcttcagcga gactatggcg gaacacacca 5520 agcatattgg aatcatgcta acaatctgcc aagaaaatgg gctggtccta agcccaaata 5580 aaatatgtct tgctcaacga gagattgaat ttttgggcac aatcatctct caaggtcaaa 5640 tgaagcttca gcctcatgtc ataaagaaga tagtcaacaa ggcagatatg gagctcgaaa 5700 caactagggg cctaagatca tttttgggcc tcctgaacta tgcccgaatc tacataccca 5760 atctggggaa gaagctaagt ccactatatg ccaaaaccag tcccaccgga gaaaagaagt 5820 ttaatcgaca ggattggcat ctgataaaag aaattaaaga tatggtccaa aagctcccaa 5880 acctcgctat cccaccagca agatgctgca ttatcataga aagcgatggt tgtatggaag 5940 gatggggggc cgtatgcaag tggaaattag caaaagaaga ttcccgcact actgaaaaga 6000 tatgtgccta cgctagtgga aaattcggca taatcaagtc cacaattgac gccgagattt 6060 tcgcactcat aaaagcactg gaatccttta aaatcttcta tctggacaaa aaacatttgg 6120 tggtgcgtac tgactgtcag gcgatagtga cattttacaa caagacaagc actcacaagc 6180 cttctcgtat acgttggatc accttttccg actatataac ggggttagga gttcaagtta 6240 ctatcgaaca cataaacgga aaggagaacc agctagcaga tacactaagc agactagtgt 6300 acaccacatg gagccagtcc caagctcacc tgccggagga agaagagccg gagaagtccc 6360 cacatctcag cttagcggcg ctagctatcc ctatagcttg gcctatgacg gcctcctaca 6420 gcaaaagaag gacgtcatta ctcacgggag actcaccctg gcaacagaac aagccatctc 6480 agcgcagctc tatcgcatcg aggagcaagc agccagaaaa gcactcatgg ccctacgaga 6540 cctacagggc gtactgcact tcaaacgaaa ctatttggcc gcaactgcca cacgtgacaa 6600 ctgggccagt gatagactgc cagctgccca acaagattcg gccgcactcg accaacatgc 6660 tggcgtgatt aacgccatta tcgaaaaggc tgtccaaccc tagtttggac gatagtgtgc 6720 aataattaag tgtgctttta ctttccagct gtaactcatt atagagtaga catagtgatt 6780 gacgatgggg cccaaggagc acccggatta ctactctacc atctataaat gagagtgtgc 6840 aaggcttagc catcagagag gaagagatat ccatcctgat tctaagcatt ctagagcttg 6900 taagttttct tttgagaaat aaagaatctt cttagtgatt atttctttgt ttcccctggg 6960 aaaattttaa acagtttctg ttattctgtt taatcctgtt ccacatttcc tctgcaaaaa 7020 tact 7024 //