ID AJ608286; SV 1; circular; genomic DNA; STD; VRL; 2611 BP. XX AC AJ608286; XX DT 20-NOV-2004 (Rel. 81, Created) DT 27-JUN-2005 (Rel. 84, Last updated, Version 2) XX DE Sinaloa tomato leaf curl virus AV1 gene, AC3 gene, AC2 gene, AC1 gene and DE AC4 gene XX KW AC1 gene; AC2 gene; AC3 gene; AC4 gene; AV1 gene; coat protein; KW replication protein; replication enhancer; transcriptional activator. XX OS Tomato leaf curl Sinaloa virus OC Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; OC Geplafuvirales; Geminiviridae; Begomovirus. XX RN [1] RP 1-2611 RA Kvarnheden A.; RT ; RL Submitted (20-NOV-2003) to the INSDC. RL Kvarnheden A., Dept of Plant Biol and Forest Genetic, Swedish Univ of RL Agricultural Sciences, P.O. Box 7080, 750 07 Uppsala, SWEDEN. XX RN [2] RA Rojas A., Kvarnheden A., Marcenaro D., Valkonen J.P.; RT "Genomic characterization of two begomoviruses, Tomato leaf curl Sinaloa RT virus and Tomato severe leaf curl virus, from Nicaragua"; RL Unpublished. XX RN [3] RX DOI; 10.1007/s00705-005-0509-x. RX PUBMED; 15789265. RA Rojas A., Kvarnheden A., Marcenaro D., Valkonen J.P.T.; RT "Sequence characterization of tomato leaf curl Sinaloa virus and tomato RT severe leaf curl virus: phylogeny of New World begomoviruses and detection RT of recombination"; RL Arch. Virol. 150(7):1281-1299(2005). XX DR MD5; b1d455735072f66848fda645123c52ab. XX FH Key Location/Qualifiers FH FT source 1..2611 FT /organism="Tomato leaf curl Sinaloa virus" FT /host="Lycopersicon esculentum" FT /isolate="NI2" FT /mol_type="genomic DNA" FT /country="Nicaragua:Santa Lucia" FT /note="component A" FT /db_xref="taxon:71186" FT CDS 196..951 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:Q5TJJ7" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:Q5TJJ7" FT /protein_id="CAE55228.1" FT /translation="MPKRDAPWRSFAATSKVSRNANYSPRTGMGPKVDKATAWVNRPMY FT RKPRIYRVMRGPDVPKGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGLTHRVGKRF FT CVKSVYILGKVWMDDNIKLKNHTNSVMFWLVRDRRPYGIPMDFGQVFNMFDNEPSTATI FT KNDLRDRFQVMHRFYAKVTGGQYASNEQAIVRRFWKVNNHVVYNHQEAGKYDNHTENAL FT LLYMACTHASNPVYATLKIRIYFYDSIAN" FT CDS complement(948..1346) FT /gene="AC3" FT /product="replication enhancer" FT /db_xref="GOA:Q5TJJ6" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q5TJJ6" FT /protein_id="CAE55229.1" FT /translation="MDSRTGALITAPQAENGVYIWEIENPLYFKMYREEDIVYTRTRVY FT HVQIRFNHNLRRVLHLHKAYLNFQIWTTLITASGSNYLARFRHLVNMYLDQLGVISINN FT VIRAVRFATDRSYVNYVLEDHSIKIKLY" FT CDS complement(1093..1482) FT /gene="AC2" FT /product="transcriptional activator" FT /db_xref="GOA:Q5TJJ5" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q5TJJ5" FT /protein_id="CAE55230.1" FT /translation="MQSSSPSNPPSIKTAHRQAKKRSIRRRRIDLECGCTIYLHIDCTG FT HGFTHRGAHHCTSSREWRLYLGDRKSPLFQDVPRRGHSVHEDQGIPCTDTVQPQPEESV FT ASPQSIPELPNLDDIDNSFWVELFS" FT CDS complement(1409..2479) FT /gene="AC1" FT /product="replication protein" FT /db_xref="GOA:Q5TJJ4" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q5TJJ4" FT /protein_id="CAE55231.1" FT /translation="MPSVKRFKVSAKNYFLTYPQCSLTKEEALSQLQNLTIPVNKKFIK FT ICRELHENGEPHLHVLIQFEGKYQCTNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYI FT DKDGDTIEWGQFQIDGRSARGGKQSTNDTYAKALNAACADEAMRIIREEQPQHFFLQHH FT NLVANAAKIFKKAPERWVPPFQLSSFTNVPDEMQEWADDYFGKDSAARPERPISIIIEG FT DSRTGKTMWARALGPHNYLSGHLDFNSRVFSNEVEYNVIDDVTPQYLKLKHWKELLGAQ FT KDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKDYLNKEENTSLKNWTLKNAIFVTLQ FT SALYQDSTQAGQEEEH" FT CDS complement(2065..2322) FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:Q5TJJ3" FT /protein_id="CAE55232.1" FT /translation="MGNLISTSLSSSKANTSARITDSSIWCPLPGQHISIRTFRELNQV FT PTSSPTSTRMEIQSNGDNSRSTVDLPEEVNNLQTTHMPRR" XX SQ Sequence 2611 BP; 646 A; 546 C; 616 G; 803 T; 0 other; acctgatggc cgcgcgattt tcccccccct acacgcgcgt acgctcctct ttaatttgaa 60 ttaaagtgta ttagtgcgct gtcgtccaat catattgcgt ctgacgagtc tagatatttg 120 caacaacttt gggcccaagt tgttgagtgt ctgctataaa ttaaagaggc tttggcccac 180 tgactttaaa tcaaaatgcc taagcgtgat gccccatggc gctcgttcgc ggcaacttcc 240 aaggttagtc gcaatgctaa ttattctcca cggactggta tggggccaaa ggtcgacaag 300 gccactgctt gggtgaatag gcccatgtat agaaagccca ggatctaccg ggttatgaga 360 ggcccagatg ttccaaaagg atgtgaaggc ccatgtaagg tccagtcata cgagcagcgc 420 cacgatattt cacatgttgg gaaggtcatg tgtatctccg acgtgacacg tggtaatggt 480 ctcacccacc gtgtggggaa gcgtttttgt gttaagtccg tgtatattct cggcaaggtt 540 tggatggatg ataacatcaa gttgaagaac cacacgaaca gtgttatgtt ttggttggtc 600 agggaccgta ggccttatgg tattcctatg gatttcggac aagtgtttaa catgttcgat 660 aacgaaccca gtaccgcgac gatcaagaac gatcttagag atcggtttca ggtcatgcac 720 aggttttatg ctaaggttac aggtggacag tatgctagta acgagcaagc tatagtgagg 780 cgtttttgga aggtcaacaa tcatgtggtc tacaatcatc aagaggcagg aaaatatgac 840 aaccatactg agaacgccct gttattgtat atggcatgta ctcatgcttc taaccccgtg 900 tatgcaacat tgaaaattcg gatctatttt tatgattcga ttgctaatta ataaagtttt 960 atttttattg aatgatcttc aagtacataa tttacatatg atctgtctgt tgcaaaacga 1020 acagctctga ttacattgtt tatcgaaatc acacctaact gatctaaata catattaact 1080 aaatgtctaa acctagctaa ataattcgac ccagaagctg ttatcaatgt cgtccagatt 1140 tggaagttca ggtatgcttt gtggagatgc aacactctcc tcaggttgtg gttgaaccgt 1200 atctgtacat ggtataccct ggtcctcgtg tacactatgt cctcttctcg gtacatcttg 1260 aaatagaggg gattttctat ctcccagata taaacgccat tctctgcttg aggtgcagtg 1320 atgagcgccc cggtgcgtga atccatgtcc cgtgcagtct atgtggaggt agatggtgca 1380 cccgcactct agatcaatcc gccttcttct aatgctcctc ttcttggcct gcctgtgtgc 1440 tgtcttgata gagggcggat tggagggtga cgaagattgc attcttgagt gtccaatttt 1500 tgagtgatgt gttttcttct ttgtttaggt aatctttata gctggcaccc tcaccaggat 1560 tgcaaagcac gattgatggg atcccacctt taatttgaac tggcttgcca tacttgcaat 1620 ttgactgcca gtctttctgg gcccccagaa gttctttcca gtgctttagc tttagatatt 1680 gcggtgtgac gtcgtcaatg acgttatact ccacttcatt agagaacact ctggaattga 1740 agtcgagatg tccactgaga taattatgtg ggcctaatgc ccgagcccac atcgtcttcc 1800 ctgtcctaga atcaccttct atgataatac taataggtct ctctggccgc gcagctgaat 1860 cctttccaaa ataatcatct gcccattctt gcatctcgtc cggaacgtta gtgaaagaag 1920 agagttgaaa cggaggaacc cagcgttccg gagccttttt gaatatttta gccgcgttag 1980 cgactaggtt atgatgttga aggaagaaat gttgtggttg ttcttcccgt atgattcgca 2040 ttgcttcgtc tgcacatgct gcattcaacg ccttggcata tgtgtcgttt gtagattgtt 2100 tacctcctct ggcagatcta ccgtcgatct ggaattgtcc ccattcgatt gtatctccat 2160 ccttgtcgat gtaggacttg acgtcggaac ttgatttagc tccctgaatg ttcggatgga 2220 aatgtgctga cctggtaggg gacaccagat cgaagaatct gttattcgtg cactggtatt 2280 tgccttcgaa ctggataagg acgtggagat gaggttcccc attctcgtgg agctctctgc 2340 agatcttgat gaatttcttg ttaaccggaa ttgttaggtt ttgtaattgg gaaagtgctt 2400 cttcttttgt aagagaacac tggggatatg tgagaaaata gtttttagct gagactttga 2460 agcgtttaac cgatggcatt ttggtaataa gaagggtgta ctccgattga gctctcaaac 2520 ttctatctat gtaattgggg taatggggta caatatatac tagaactctc tatggagttt 2580 tgggacacgt ggcggccatc agtataatat t 2611 //