ID AJ608219; SV 1; linear; genomic RNA; STD; VRL; 4452 BP. XX AC AJ608219; XX DT 17-MAR-2004 (Rel. 79, Created) DT 17-MAR-2004 (Rel. 79, Last updated, Version 1) XX DE Rice yellow mottle virus complete genome, isolate CIa XX KW coat protein; complete genome; ORF1; ORF2a; ORF2b; ORF4; P1; protease; KW RNA-dependent RNA polymerase; VPg. XX OS Rice yellow mottle virus OC Viruses; Riboviria; Solemoviridae; Sobemovirus. XX RN [1] RP 1-4452 RA Fargette D.; RT ; RL Submitted (18-NOV-2003) to the INSDC. RL Fargette D., Dgpc, Ird, BP 64501, 34394 Montpellier cedex 5, FRANCE. XX RN [2] RX DOI; 10.1128/JVI.78.7.3252-3261.2004. RX PUBMED; 15016846. RA Fargette D., Pinel A., Abubakar Z., Traore O., Brugidou C., Fatogoma S., RA Hebrard E., Choisy M., Sere Y., Fauquet C., Konate G.; RT "Inferring the evolutionary history of rice yellow mottle virus from RT genomic, phylogenetic, and phylogeographic studies"; RL J. Virol. 78(7):3252-3261(2004). XX DR MD5; d2cf9b1d3d21126a9f056803912b2a56. DR EuropePMC; PMC2649914; 19220875. DR EuropePMC; PMC371063; 15016846. DR EuropePMC; PMC3791421; 23830075. DR EuropePMC; PMC5125353; 27965688. DR RFAM; RF01838; sobemo_FSE. XX FH Key Location/Qualifiers FH FT source 1..4452 FT /organism="Rice yellow mottle virus" FT /isolate="CIa" FT /mol_type="genomic RNA" FT /country="Cote d'Ivoire" FT /db_xref="taxon:31744" FT CDS 81..554 FT /product="P1" FT /function="possible roles in suppression of FT post-transcriptional gene silencing and viral movement" FT /note="ORF1" FT /db_xref="InterPro:IPR021971" FT /db_xref="UniProtKB/TrEMBL:Q709G4" FT /protein_id="CAE81343.1" FT /translation="MTRLEVLIRPTQQTVARAITAGYTHALTWVWHSQTWDVDAVNDPV FT LSADFNPTKVGWVSVSFACTRCTAHYYTSEQVKCFVNIPPVHYDVVCADCERSAQQDEE FT IDREHNERNAEISACNARALSEGRPASLVYLSRDACDIPEHSGTCRFDKYLNF" FT CDS 609..2426 FT /product="protease and VPg" FT /note="ORF2a" FT /db_xref="GOA:Q709G3" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:Q709G3" FT /protein_id="CAE81344.1" FT /translation="MGFSVVGRFLTRTKETTRVDSNLLIVLAGLIAAAIVSERLPVTAS FT LWAIPSAIIANWIVLSAHESFSRFVEGVEIEPMSTLRYGKVQSAPRFDPSRGYVVDVSY FT NGHVIPVILDFTTTTALSVPQRVNPGVSMEASRGGLPPTSVKLEDVPPSVVVLYHDSVR FT LGLGTRVRTPTGRDLLMTNHHIAALEPNGIAYKGHLKKVTLDAPVIACDHPHIDCAFYE FT VPPKIWSLLGVKSASLKPLVKQTAVSLFGGSSSTDFSSCVGIAQIGDNPFLIRHQSTTC FT SGWSGSPLYHKGCVVGLHIGAADGYNVASNVAWYFHTFKREVAVESPFEIYGKFREANS FT EEYDESLRHGVEYAEYDFSGDTIRASSNTWVRERTKYHAEERRKSGQLSWADRFGDDSG FT EDVDIETSHPVAPSISKARRRRSKRVEQFVDAVSECSFSFESAHEGVVPETSAYDHVPL FT NCQGAGSSLRASPPLDGLFDSESTTGTPLATPSLPTGCPSATLENRVSSLENMLGKVSA FT QLSKTQSQYSQILKDLAGLRGEVKQSLTPSSSKPAGSTGRYVPPGSRKQSNHSKKSTQK FT SPLGDASGTSGGSTTSSMKSKESSAKPAK" FT CDS <2093..3607 FT /product="RNA-dependent RNA polymerase" FT /note="ORF2b" FT /note="ORF2b produced by a -1 frameshift in ORF2a, FT translation occurs as an ORF2a-ORF2b fusion protein" FT /db_xref="GOA:Q709G2" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:Q709G2" FT /protein_id="CAE81345.1" FT /translation="MPFSYVGKSGVVFGEHAGKSVCAAVKDAISVFPDLEGFGWPERGS FT KAELDSLILQAGRFNRTVCPSGLAQAVQSLQEKYPKVPPRRCLRDEWRFDDIFDEVERI FT LCETGEVNSASSPGVPLAGLANSNGEVRGLARDLVCLAVVERLNALASVDPRQHNWTPR FT ELVEKGLCDPVRLFVKNEPHPQKKLRERRFRLISSVSLVDQLVERMLFGPQNNTEISTW FT WQWPSKPGMGLLTPEQIRLVWDDVFQKHQAHPAAEADISGFDWSVQDWELWSDLAIRIN FT RGNFQGNLRRAAISRYYCFMNSVFQLSDGTLIQQELPGLMKSGSYCTSSTNSRIRCLMA FT ELIGSPWCIAMGDDSVEGWIEGAQSKYAALGHTCKEYYPCKTRGRELLEFNFCSHLIRR FT GHAELTSWPKALFRFLSSKHEDFEDLWVELHTCGVWSRIERYLRGIGRVSHKDGQEGQE FT NQLQPGAARKEEEPAPTWAFGGASASTGSGGSGLPDIWDGSWSTIF" FT CDS 3447..4166 FT /product="coat protein" FT /note="ORF4" FT /db_xref="GOA:Q709G1" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q709G1" FT /protein_id="CAE81346.1" FT /translation="MARKGKKINSNQGQQGKKKSRRPRGRSAEPQPQRAPVAQASRISG FT TVPGPLSSKTWPLHSVEFLADFKRSATSADATTYNCVPFNLPRVWSLARCYSMWKPTRW FT DVVYLPEVSAATAGSIEMCYLYDYADTIPSDTGKMSRTAGFVTSSVWYGAEGCHLLSGG FT SARNAVVASMDCSRVGWTRVTSSIPSKADPNVVNTMLPARLAVRSSVKPTVDDTPGKLY FT AIVSMVLRDPVDPTLNT" XX SQ Sequence 4452 BP; 985 A; 1151 C; 1278 G; 1038 T; 0 other; acaattgaag ctaggaaagg agcatattgc gaaagcgatc cctccttccg ccgaagaatt 60 gtagccacgc tgcaacgtgt atgacacggt tggaagttct tatacgaccg actcagcaga 120 ctgtggcaag agccattacc gcgggctata cgcacgcact cacctgggtt tggcattctc 180 agacctggga cgttgacgca gtgaacgatc cagttctcag cgccgacttc aaccccacaa 240 aggttggttg ggtgtcagtg tcatttgcct gtactcggtg tacagctcac tactatacga 300 gtgagcaggt gaagtgtttc gttaacatcc cacctgtcca ttacgacgta gtgtgtgctg 360 attgcgagcg cagtgctcag caggacgagg agatcgaccg tgagcacaac gagcgtaacg 420 cagagatttc tgcctgcaac gctcgggccc tgagtgaagg tagaccagca agtttggttt 480 atctttcgcg ggacgcttgt gatatacccg agcactccgg aacgtgccgg tttgacaaat 540 acctcaactt ttgagggaat cagtcctgcc gacatctaag gagcggtctt ggttcagact 600 aacacgggat gggcttttct gttgttggtc gctttctcac tcgcaccaag gaaacgacga 660 gggtggactc caacctcctc atcgtcttgg ctgggttgat agcggccgcg atagtctcag 720 agcgcctgcc cgtgacggcg tcattgtggg caatcccctc agctatcata gcaaactgga 780 tcgtgctgtc agctcacgag agcttcagcc ggttcgttga gggggttgag attgagccca 840 tgtccacact tcggtatggc aaggttcagt ctgcccccag gttcgatccc tcccggggtt 900 acgtggttga cgtatcctat aacggccatg tgattccggt gatattggac ttcaccacga 960 cgacagctct gtcggttcct caaagagtaa atcctggggt ctcgatggag gcgagtcgtg 1020 gagggctccc gccgacgtcc gtcaaactcg aagatgtgcc gccgagcgtt gtggttttgt 1080 accacgactc tgtcaggcta ggcctgggaa ccagggtgcg gactcccaca ggtcgtgatc 1140 tcctcatgac caatcaccat atcgccgccc tagaacccaa tggtatcgcg tacaagggtc 1200 accttaagaa agtgactctg gatgcgccag tcatcgcatg tgaccatcca cacatagact 1260 gcgcatttta cgaggtgcct cccaagattt ggtctctctt gggggtcaag tctgccagtc 1320 tgaaacctct ggttaaacag actgcggtgt cactcttcgg aggctcgtca tctactgact 1380 tctcaagttg tgttgggatc gcccagattg gggacaatcc attcctgata aggcatcaaa 1440 gcacgacttg cagtgggtgg tcgggctctc cgctctacca caaaggttgc gtggttggtc 1500 tacatatagg tgctgcggat ggttataatg tggcatctaa tgtggcctgg tactttcata 1560 ccttcaagag ggaagtagcc gttgagtctc catttgagat ttacggcaaa ttccgtgaag 1620 caaactccga ggagtatgac gagagtctac gacatggagt tgagtatgca gagtacgact 1680 tctctggtga caccatccgg gcatcttcaa atacctgggt gcgtgagagg acgaagtacc 1740 acgctgagga acgtcgtaag tccggccagc ttagctgggc agaccgcttt ggtgacgaca 1800 gtggcgagga tgttgatatc gagacatcgc atcccgtagc accgtcaata tctaaagcgc 1860 ggcggagacg gtcaaagcgc gttgagcagt tcgtcgacgc ggtttcagag tgctctttct 1920 cgttcgagtc agctcacgag ggggttgtac cagagacctc agcttatgac cacgttcctt 1980 taaactgcca gggggcgggc tcgagccttc gggcgagtcc gcccttggac ggcttattcg 2040 actcggagag taccactggg actcccttgg cgactccctc ccttccgacg ggatgccctt 2100 cagctacgtt ggaaaatcgg gtgtcgtctt tggagaacat gctgggaaaa gtgtctgcgc 2160 agctgtcaaa gacgcaatct cagtattccc agatcttgaa ggatttggct ggcctgagag 2220 gggaagtaaa gcagagcttg actccctcat cctccaagcc ggccggttca acaggacggt 2280 atgtccctcc gggctcgcgc aagcagtcca atcactccaa gaaaagtacc caaaagtccc 2340 ccctaggcga tgcctcaggg acgagtggag gttcgacgac atcttcgatg aagtcgaaag 2400 aatcctctgc gaaaccggcg aagtgaattc cgcttcctcg ccgggggtgc cgcttgcggg 2460 ccttgccaat tccaacggtg aggttcgtgg gctagcgaga gatttggtat gtttagctgt 2520 ggtagagcgc ttgaatgcct tagcctcggt tgacccccgc cagcacaact ggacacccag 2580 ggagctggta gagaaaggtc tttgtgaccc cgtgcgcttg tttgtcaaga acgagccaca 2640 cccacagaag aaattgcgtg aacgtcgatt caggctgatt tcttctgttt ctctagttga 2700 ccagctggtg gagcggatgc ttttcgggcc acagaacaac accgagatct caacttggtg 2760 gcagtggcct tcgaagccgg gcatgggtct tttgacccct gaacaaatcc gtttggtgtg 2820 ggacgatgtg ttccaaaagc accaggccca ccctgcggct gaggcagaca tatcggggtt 2880 tgactggtcc gttcaggact gggagttgtg gtcagacctc gcgatccgaa taaacagggg 2940 gaattttcag ggaaacctca ggagggcggc tattagccgt tactactgtt ttatgaactc 3000 tgttttccaa ctttcagatg gaaccctcat ccagcaggaa ttgcccggat taatgaaatc 3060 cggctcttac tgcacctcat ctaccaactc gcgcatacgc tgtctaatgg ctgagcttat 3120 cggttcgcca tggtgcatag ctatgggcga cgattcggta gaggggtgga ttgagggggc 3180 ccagtccaag tacgccgcgt tgggtcacac ctgcaaggag tactacccat gtaagaccag 3240 gggacgtgag cttctggaat tcaacttctg ttcacacttg atcaggaggg gtcatgctga 3300 gcttacttca tggccgaagg cgttgtttcg ctttctgtcg agcaagcatg aggactttga 3360 agatctgtgg gttgagcttc acacgtgcgg ggtgtggagc cggattgaac gatatctgcg 3420 tgggataggg cgagtctccc acaaagatgg ccaggaaggg caagaaaatc aactccaacc 3480 aggggcagca aggaaagaag aagagccggc gcccacgtgg gcgttcggcg gagcctcagc 3540 ctcaacgggc tccggtggct caggcctccc ggatatctgg gacggttcct ggtccactat 3600 cttctaaaac ctggccgctc cactccgtgg aattcctagc ggattttaag cggagtgcca 3660 cctcagcaga cgcgacgaca tacaattgtg tgccgtttaa tctgccccga gtgtggagtc 3720 ttgcacgttg ttactccatg tggaagccaa cacggtggga tgtcgtttac cttcctgagg 3780 tgagcgcggc gacagctgga agtatcgaga tgtgttatct ctacgactat gctgacacca 3840 tcccaagtga cacgggtaag atgagcagga cggcgggctt cgtcacctcc agcgtttggt 3900 acggcgcgga gggctgccac ttactgagtg gcggctcagc acgaaatgcc gtggtcgcct 3960 cgatggactg ttctcgagtc ggctggacac gcgttactag ttccattcct agtaaagcgg 4020 atcccaacgt cgtaaacacc atgctgccag ctaggctagc tgtgcggtcg tcggttaaac 4080 cgacggttga tgatacgccg gggaaactct acgctatcgt cagtatggtc ctgcgggatc 4140 cggttgatcc aacactcaat acgtgaaccg gatttcagta gagataggta ttggcatcag 4200 tgatgatcca cggaccggct cagagatcga ctaccctgaa aaggatgttg agcgttcttg 4260 aaacgcgggc ctgatcctac gagatgatac tggtgactat cctacgtgag gagttgcact 4320 cacgctttca acccaaagca acccatgcac tggatagtgc ttacccagat ggttttcgga 4380 gctactgggc ggacttttca caaaccgaat tctccattca ttccgagaga actctcggga 4440 tgggtggggg ag 4452 //