ID AJ608218; SV 1; linear; genomic RNA; STD; VRL; 4449 BP. XX AC AJ608218; XX DT 17-MAR-2004 (Rel. 79, Created) DT 17-MAR-2004 (Rel. 79, Last updated, Version 1) XX DE Rice yellow mottle virus complete genome, isolate Tz8 XX KW coat protein; complete genome; ORF1; ORF2a; ORF2b; ORF4; P1; protease; KW RNA-dependent RNA polymerase; VPg. XX OS Rice yellow mottle virus OC Viruses; Riboviria; Solemoviridae; Sobemovirus. XX RN [1] RP 1-4449 RA Fargette D.; RT ; RL Submitted (18-NOV-2003) to the INSDC. RL Fargette D., Dgpc, Ird, BP 64501, 34394 Montpellier cedex 5, FRANCE. XX RN [2] RX DOI; 10.1128/JVI.78.7.3252-3261.2004. RX PUBMED; 15016846. RA Fargette D., Pinel A., Abubakar Z., Traore O., Brugidou C., Fatogoma S., RA Hebrard E., Choisy M., Sere Y., Fauquet C., Konate G.; RT "Inferring the evolutionary history of rice yellow mottle virus from RT genomic, phylogenetic, and phylogeographic studies"; RL J. Virol. 78(7):3252-3261(2004). XX DR MD5; 3fda8a4eb71063bfe22537a29f6bd36d. DR EuropePMC; PMC1061534; 15767440. DR EuropePMC; PMC371063; 15016846. DR EuropePMC; PMC3791421; 23830075. DR RFAM; RF01838; sobemo_FSE. XX FH Key Location/Qualifiers FH FT source 1..4449 FT /organism="Rice yellow mottle virus" FT /isolate="Tz8" FT /mol_type="genomic RNA" FT /country="Tanzania" FT /db_xref="taxon:31744" FT CDS 81..554 FT /product="P1" FT /function="possible roles in suppression of FT post-transcriptional gene silencing and viral movement" FT /note="ORF1" FT /db_xref="InterPro:IPR021971" FT /db_xref="UniProtKB/TrEMBL:Q709G8" FT /protein_id="CAE81339.1" FT /translation="MTRLEVLIRPTEQTAAKAIAVGYTHALTWVWHSQTWDVDAVNDPV FT LRADFNPEKVGWVSVSFACTQCTAHYYTCEQVKFFTNIPPVHYDVVCADCERSVQLDDE FT IDREHQERNAEISACNARALSEGRPASLVYLSRDACDIPEHSGRCRFVKYLNF" FT CDS 609..2426 FT /product="protease and VPg" FT /note="ORF2a" FT /db_xref="GOA:Q709G7" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:Q709G7" FT /protein_id="CAE81340.1" FT /translation="MGSSVVGRFLTRTKETMRVDSNLLIVLAGLIAAAIVSERLPVTAS FT LWAIPSAIIANWIVLSAHESFSRFVEGVEIEPMSTLRYGKVQSAPRFDPSRGYVVDVSY FT NGHVIPVILDFTTTTALSVPQRVNPGVSMEASRGGLPPTSVKLEDVPPSVVVLYHDSVR FT LGLGTRVRTPTGRDLLMTNHHIAALEPNGIAYKGHLKKVALDAPVIACDHPHIDCAFYE FT VPPRIWSLLGVKSASLKPLVKQTAVSLFGGSSSTDFSSCVGIAQIGDNPFLIRHQSTTC FT SGWSGSPLYHKGCVVGLHIGAADGYNVASNVAWYFHTFKKEVVVESPFEIYGKFREANS FT EEYDESLRHGVEYAEYDFSGDTIRASSNTWVRERERYHAEERRKSGQLSWADRFGDDSG FT EDVDIETSHPVAPSISKARRKRSKRVEQFVDAVSECSFSFESAHEGVIPETSAYDHVPL FT NCQGAGSSLRASPPLDGLFNSENTTGTPLVTPSLPTECLSATLENRVSSLENMLGKVSA FT QLSKTQSQYSQILKDLAGLRGEVKQSLTPSSSKPAGSTERYVPPGSRKQSNHSKKGTQR FT SPQGVASGTSGDSTTSSTKSKESSAKPAK" FT CDS <2093..3607 FT /product="RNA-dependent RNA polymerase" FT /note="ORF2b" FT /note="ORF2b produced by a -1 frameshift in ORF2a, FT translation occurs as an ORF2a-ORF2b fusion protein" FT /db_xref="GOA:Q709G6" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:Q709G6" FT /protein_id="CAE81341.1" FT /translation="MPFSYVGKSGVIFGEHAGKSVCAAVKDAISVFPDLEGFGWPERGS FT KAELDSLILQAGRFNRTVCPSGLAQAVQSLQERYPKVPPRRCLRDEWRFDDIFDEVERI FT FCETGEVNTASSPGVPLTGLANSNGEVRKLARDLVCLAVVERLNALASVDPRQHNWTPR FT ELVEKGLCDPVRLFVKNEPHPQKKLRERRFRLISSVSLVDQLVERMLFGPQNNTEISTW FT WQWPSKPGMGLLTHEQIRLVWDDVFQKHQAHPAAEADISGFDWSVQDWELWSDLAIRIN FT RGNFQGNLRKAAISRYYCFMNSVFQLSDGTLIQQELPGLMKSGSYCTSSTNSRIRCLMA FT ELIGSPWCIAMGDDSVEGWIEGAQSKYAALGHTCKEYYPCKTRGRELLEFNFCSHLIRK FT GHAELTSWPKALFRFLSSKHEDFEDLWVELHTCGVWGRIEQYLRGIGRVSHKDGQEGQE FT NQLQPGPARKEEESAPSWSLGGAPASTGSSGSGLPDIWDGSWTTIF" FT CDS 3447..4166 FT /product="coat protein" FT /note="ORF4" FT /db_xref="GOA:Q806Y5" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q806Y5" FT /protein_id="CAE81342.1" FT /translation="MARKGKKTNSNQGQQGKKKSRRPRGRSAEPRLQRAPVAQASRISG FT TVPGPLSSNTWPVHSVEFLMDFKRSATSADATTFNCVPFNLPRVWSLARCYSMWKPTQW FT DVIYLPEVSAATAGSIEMCYLYDYADAIPSDTGKMSRTAGFVTSSVWYGAEGCHLLSGG FT TARNAVVASMDCSRVGWKRVTSSIPDSVDPNVVNTILPARLAVRSSIKPTVDDVPGKLY FT VIVSMVLRDPVDPTLNT" XX SQ Sequence 4449 BP; 991 A; 1143 C; 1265 G; 1050 T; 0 other; acaattgaag ctaggaaagg agcatattgc gaaagcgatc cctccttccg acgaacaatt 60 gtagccgctc tgcctcgtgc atgacacggt tggaagttct tatacgaccg actgagcaga 120 ctgcggcgaa agccattgcc gtgggctata cacacgcact cacctgggtt tggcattctc 180 agacctggga cgttgacgct gtgaacgatc ccgttctcag agccgacttc aaccctgaaa 240 aggttggttg ggtgtcagtg tcgtttgcct gtactcagtg cacggctcac tactatacgt 300 gtgagcaggt gaaattcttc accaacatcc cgccggttca ttacgacgtg gtgtgtgccg 360 attgcgagcg tagtgttcag ctggacgacg agatcgaccg cgaacaccaa gagcgtaacg 420 cagagatttc tgcctgcaac gctcgggcct taagtgaggg acggccagct agcctggtat 480 acctctctcg ggacgcttgt gacattcctg agcactccgg aaggtgccgg tttgttaagt 540 acctcaactt ctgagggaac acaacctgcc gacatccaag gaacggtcgt ggttcagact 600 gacacgggat gggctcttct gttgttggtc gctttctcac tcgcaccaag gaaacgatga 660 gagtggactc caacctcctc atcgtcttgg ctgggttgat agcggccgcg atagtctcag 720 agcgtctacc cgtgacggcg tcattgtggg caatcccctc agctatcata gcaaactgga 780 tcgtgctatc agctcacgag agcttcagcc ggttcgttga gggggttgag attgagccca 840 tgtccacact tcggtatggc aaggttcagt ccgcccccag gttcgatccc tcccggggtt 900 atgtggtcga cgtttcgtac aacggccacg tgattcctgt gatattggac ttcaccacaa 960 ctacggcctt atcggttccc caaagagtaa atcccggggt ctcgatggag gcgagtcgtg 1020 gggggctccc gccgacgtcc gtcaaactcg aagatgtgcc gccgagcgtt gtggttttat 1080 accacgactc tgtcaggcta ggcctaggaa ccagagtacg aactcccaca ggtcgtgatc 1140 tcctcatgac caatcaccat atcgctgctt tggaacctaa tggtatcgcg tacaagggcc 1200 accttaagaa agtagctctg gatgcgccag tcattgcatg tgaccatcca cacatagact 1260 gcgcatttta tgaggtgcct cccaggattt ggtctctctt gggggttaag tctgccagtt 1320 tgaagccttt ggttaagcaa actgcggtgt cactcttcgg tggctcgtca tctactgact 1380 tctcaagttg tgttgggata gcccagattg gggacaatcc gttcctgata aggcatcaaa 1440 gcacgacttg cagtggatgg tcgggctccc cgctctacca caaaggttgc gtggttggtc 1500 tgcatatagg tgctgcggat ggttataatg tggcatctaa tgtggcctgg tacttccata 1560 ccttcaagaa ggaagtggtc gttgagtctc catttgagat ttacggcaaa ttccgggagg 1620 caaactctga ggagtatgac gagagtctac gacacggggt ggaatatgcg gagtacgact 1680 tctctggtga taccatccgg gcttcttcca atacctgggt gcgtgagaga gagaggtacc 1740 acgccgagga acgtcgtaag tccggccagc ttagctgggc agatcgtttt ggtgacgaca 1800 gtggcgagga tgttgatatc gagacatcgc atcccgtagc accgtcaata tctaaagcgc 1860 ggcggaaaag gtcaaagcgc gttgagcagt tcgtcgacgc ggtttctgaa tgctccttct 1920 cgttcgagtc agctcacgag ggagtaattc ctgagacctc agcttatgac cacgttcctt 1980 taaactgcca gggggcgggc tcgagccttc gggcgagtcc gcccttggac ggcttattca 2040 actcggagaa taccactggg actcccttgg tgactccctc ccttccgacg gaatgccttt 2100 cagctacgtt ggaaaatcgg gtgtcatctt tggagaacat gctgggaaaa gtgtctgcgc 2160 agctgtcaaa gacgcaatct cagtattccc agatcttgaa ggatttggct ggcctgagag 2220 gggaagtaaa gcagagcttg actccctcat cctccaagcc ggccggttca acagaacggt 2280 atgtccctcc gggctcgcgc aagcagtcca atcactccaa gaaaggtacc caaaggtccc 2340 cccaaggcgt tgcctcaggg acgagtggag attcgacgac atcttcgacg aagtcgaaag 2400 aatcttctgc gaaaccggcg aagtgaatac cgcttcctcg ccgggggttc cgctgacggg 2460 tcttgccaac tcaaacggtg aggtccggaa gctagcgaga gatttggttt gtttagctgt 2520 ggtagagcgc ctgaatgcct tggcctcggt tgacccccgc cagcacaact ggacacccag 2580 ggagctggta gagaaaggtc tttgcgaccc tgtgcgtttg ttcgtcaaga acgagccaca 2640 cccacagaag aaattgcgtg aacgtcgatt caggctgatc tcttctgttt ctctagtcga 2700 ccagctggtg gagcggatgc ttttcgggcc acagaacaac accgagattt caacttggtg 2760 gcagtggcct tcaaagccgg gcatgggtct gctgacccat gaacaaatcc gtttggtgtg 2820 ggatgacgta ttccagaaac accaggccca ccctgcggct gaggcagaca tatcggggtt 2880 tgactggtcc gttcaggact gggagttgtg gtcagacctc gcgatccgca taaacagggg 2940 gaattttcag ggaaacctca ggaaagcggc tatcagccgt tattactgtt ttatgaactc 3000 tgttttccag ctctcagatg gaactctcat ccagcaggag ttgccgggat tgatgaaatc 3060 cggctcttac tgcacctcgt ctacaaactc gcgcatacgc tgtctaatgg ctgagctcat 3120 cggctcgcca tggtgtatag ctatgggtga tgattctgtg gaggggtgga ttgagggagc 3180 ccaatccaag tacgccgcgc taggtcacac ctgcaaggag tactacccat gtaagactag 3240 gggccgtgag ctcctggaat tcaatttctg ttcacacttg atcaggaagg gtcatgctga 3300 gctgacttca tggccgaagg cgcttttccg ctttctgtcc agcaagcatg aggattttga 3360 agatctgtgg gttgagcttc acacttgcgg ggtgtggggc aggatcgaac aatatctgcg 3420 tgggataggg cgagtctccc acaaagatgg ccaggaaggg caagaaaacc aactccaacc 3480 agggccagca aggaaagaag aagagtcggc gccctcgtgg tcgctcggcg gagccccggc 3540 ttcaacgggc tccagtggct caggcctccc ggatatctgg gacggttcct ggaccactat 3600 cttctaacac ctggccggtc cactccgtgg aattcctgat ggattttaag cggagtgcca 3660 catcggcgga tgcgacgaca ttcaattgtg tgccgtttaa tctgcctcgg gtgtggagtc 3720 ttgcgcgttg ttactcaatg tggaagccaa cacagtggga cgtcatttac ctccctgagg 3780 tgagtgctgc aacggctgga agtatcgaga tgtgctatct ctacgactat gctgatgcta 3840 tcccaagtga cacgggcaag atgagcagga cggcgggctt cgtgacctct agcgtttggt 3900 acggcgctga gggctgccac ttattaagtg gcggcacagc acgaaatgcc gtggtcgcct 3960 cgatggattg ttctcgagtc ggctggaaac gcgttaccag ttcaatacct gatagcgtgg 4020 atcccaacgt cgtaaacacc atactgccgg ctaggctagc cgtgcgatcg tcgatcaaac 4080 cgacggttga tgatgtaccg ggtaaactct atgtcatcgt cagtatggtc ctgcgggatc 4140 cggttgatcc aacactcaat acgtgaaccg gattcaatgg agataggtat tggcaccagt 4200 gatgatccac ggattggctc agagatcgac taccctgaaa aggatgttga gcgttttcga 4260 acgcgggcca aatcctacga gatgatactg gtgtctatcc catgtgagga gttgtactca 4320 cgtttcaatc caaaacaacc catgcactgg attgtgctta cccaattggc gtcggggccg 4380 ttgggaggac cttttcacca accgaattct ccattcattc cgagagaatt ctcgggatgg 4440 gtgggggag 4449 //