ID AJ608217; SV 1; linear; genomic RNA; STD; VRL; 4449 BP. XX AC AJ608217; XX DT 17-MAR-2004 (Rel. 79, Created) DT 17-MAR-2004 (Rel. 79, Last updated, Version 1) XX DE Rice yellow mottle virus complete genome, isolate Tz5 XX KW coat protein; complete genome; ORF1; ORF2a; ORF2b; ORF4; P1; protease; KW RNA-dependent RNA polymerase; VPg. XX OS Rice yellow mottle virus OC Viruses; Riboviria; Solemoviridae; Sobemovirus. XX RN [1] RP 1-4449 RA Fargette D.; RT ; RL Submitted (18-NOV-2003) to the INSDC. RL Fargette D., Dgpc, Ird, BP 64501, 34394 Montpellier cedex 5, FRANCE. XX RN [2] RX DOI; 10.1128/JVI.78.7.3252-3261.2004. RX PUBMED; 15016846. RA Fargette D., Pinel A., Abubakar Z., Traore O., Brugidou C., Fatogoma S., RA Hebrard E., Choisy M., Sere Y., Fauquet C., Konate G.; RT "Inferring the evolutionary history of rice yellow mottle virus from RT genomic, phylogenetic, and phylogeographic studies"; RL J. Virol. 78(7):3252-3261(2004). XX DR MD5; 7a260e0f2467996965109d660526e62b. DR EuropePMC; PMC1061534; 15767440. DR EuropePMC; PMC371063; 15016846. DR EuropePMC; PMC3791421; 23830075. DR RFAM; RF01838; sobemo_FSE. XX FH Key Location/Qualifiers FH FT source 1..4449 FT /organism="Rice yellow mottle virus" FT /isolate="Tz5" FT /mol_type="genomic RNA" FT /country="Tanzania" FT /db_xref="taxon:31744" FT CDS 81..554 FT /product="P1" FT /function="possible roles in suppression of FT post-transcriptional gene silencing and viral movement" FT /note="ORF1" FT /db_xref="InterPro:IPR021971" FT /db_xref="UniProtKB/TrEMBL:Q709H2" FT /protein_id="CAE81335.1" FT /translation="MTRLEVLIRPTEQTAAKAIAVGYTHTLTWVWYSQTWDVDAVNDPV FT LRADFNPDKVGWVSVSFACTQCTAHYYTCEQVKHFTNIPSVHYDVVCADCERGVQLDDE FT IDREHQERNAEISACNARALSEGRPASLVYLTRDACDIPEHSGRCRFVKYLNF" FT CDS 608..2425 FT /product="protease and VPg" FT /note="ORF2a" FT /db_xref="GOA:Q709H1" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:Q709H1" FT /protein_id="CAE81336.1" FT /translation="MGSSVVGRFLTRTKETTRVDSNLLIVLAGLIAAAIVSERLPVTAS FT LWAIPSAIIANWIVLSAHESFSRFVEGVEIEPMSTLRYGKVQSAPRFDPSRGYVVDVSY FT NGHVIPVILDFTTTTALSVPQRVNPGVSMEASRGGLPPTSVKLEDVPPSVVVLYHDSVR FT LGLGTRVRTPTGRDLLMTNHHIAALEPNGIAYKGHLKKVTLDAPVIACDHPHIDCAFYE FT VPPRIWSLLGVKSASLKPLVKQTAVSLFGGSSSTDFSSCVGIAQIGDNPFLIRHQSTTC FT SGWSGSPLYHKGCVVGLHIGAADGYNVASNVAWYFHTFKKEVVVESPFEIYGKFREANS FT EEYDESLRHGVEYAEYDFSGDTIRASSNTWVRERERYHAEERRKSGQPSWADRFGDDSG FT EDVDIETSHPVAPSIPRARQKRSKRVEQFVDAVSECSFSFESAHEGIIPETSAYDHVPL FT NCQGAGSSLRASPPLDGLSNSENTTGTPLVTPSLPTECPSATLENRLSSLENMLGKVSA FT QLSKTQSQYSQILRDLAGLRGEVKQSSTPSSSKPVGSTERYVPPGSRKQSSHSKKGTQK FT SPQGVASGTNGDSTTSSMKSKESSAKPAK" FT CDS <2092..3606 FT /product="RNA-dependent RNA polymerase" FT /note="ORF2b" FT /note="ORF2b produced by a -1 frameshift in ORF2a, FT translation occurs as an ORF2a-ORF2b fusion protein" FT /db_xref="GOA:Q709H0" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:Q709H0" FT /protein_id="CAE81337.1" FT /translation="MPFSYVGKSVVIFGEHAGKSVCAAVKDAISVFPDLEGFGWPERGS FT KAELDSLILQAGRFNRTVCPSGLAQAVQSLQERYPKVPPRRCLRDEWRFDDIFDEVERI FT FCETGEVNTASSPGVPLTGLANSNGEVRKLARDLVCLAVVERLNALASVDPRQHNWTPR FT ELVEKGLCDPVRLFVKNEPHPQRKLRERRFRLISSVSLVDQLVERMLFGPQNNTEISTW FT WQWPSKPGMGLLTHEQIRLVWDDVFQKHQAHPAAEADISGFDWSVQDWELWSDLAIRIN FT RGNFQGNLRKAAISRYYCFMNSVFQLSDGTLIQQELPGLMKSGSYCTSSTNSRIRCLMA FT ELIGSPWCIAMGDDSVEGWIEGAQSKYAALGHTCKEYYPCKTRGRELLEFNFCSHLIRK FT GHAELTSWPKALFRFLSSKHEDFEDLWVELHTCGVWSRIEQYLRGIGRVSHKDGQEGQE FT NQLQPGPARKEEESASPWAFGGAPASTGSSGSGLPDIWDGSWSTIF" FT CDS 3446..4165 FT /product="coat protein" FT /note="ORF4" FT /db_xref="GOA:Q805Q2" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q805Q2" FT /protein_id="CAE81338.1" FT /translation="MARKGKKISSNQGQQGKKKSRRPRGRSAEPQLQRAPVAQASRISG FT TVPGPLSSSSWPVHSVEFLMDFKRSATSAEATTFNCVPFNLPRVWSLARCYSLWKPTRW FT DVIYLPEVSAATAGSIEMCYLYDYADAIPSDTGKMSRTAGFVTSSVWYGAEGCHLLSGG FT TARNAVVASMDCSRVGWRRVTSSIPSSVDPNVVNTILPARLAVRSSIKPTVDDVPGKLY FT AIVSMVLRDPVDPTLNT" XX SQ Sequence 4449 BP; 990 A; 1140 C; 1267 G; 1052 T; 0 other; acaattgaag ctaggaaagg agcatattgc gaaagcgatc cctccttccg acgaacaatt 60 gtagccgctc tgcctcgtgt atgacacggt tggaagttct tatacgaccg actgagcaga 120 ctgcggcgaa agccattgcc gtgggctata cgcacacact cacctgggtt tggtattctc 180 agacctggga cgttgacgct gtgaacgatc ccgttctcag agccgacttc aaccctgata 240 aggttggttg ggtgtcagtg tcgtttgcct gtactcagtg cacggctcac tactacacgt 300 gtgagcaggt gaaacacttc accaacatcc cgtcggttca ttacgacgtg gtgtgtgctg 360 attgcgagcg tggtgttcag ctggacgacg aaatcgaccg cgaacaccaa gagcgtaacg 420 cagagatttc tgcctgcaac gctcgagctt tgagtgaagg gcgaccagct agtctggttt 480 acctcactcg ggacgcttgc gatatccctg agcactccgg aaggtgccgg tttgttaagt 540 acctcaactt ttgagggacg caatctgccg acatccaagg aacggtcgtg gttcagacta 600 acgcgggatg ggctcttctg ttgttggtcg ctttctcact cgcaccaagg aaacgacgag 660 ggtggactcc aacctcctca tcgtcttggc tgggttgata gcggccgcga tagtatcaga 720 gcgcctaccc gtgacggcgt cattgtgggc aatcccctca gctatcatag caaactggat 780 cgtgctatca gctcacgaga gcttcagccg gttcgttgag ggggttgaga ttgagcccat 840 gtctacactt cggtatggca aggttcagtc cgcccctcgg tttgatccct cccggggtta 900 cgtggtcgac gtttcataca acggccatgt gattccggtg atattagact tcaccactac 960 tacggctttg tcggttcccc aaagagtaaa tcccggggtc tcgatggagg cgagtcgtgg 1020 ggggctcccg ccgacgtccg tcaaactcga agatgtgccg ccgagtgttg tggttttgta 1080 ccacgactct gtcaggctag gcctaggaac cagggtgcga actcccacag gtcgtgatct 1140 cctcatgacc aatcaccata tcgctgcttt ggaacctaat ggcatcgcgt acaagggtca 1200 ccttaagaaa gtgaccttgg atgcgccagt catcgcgtgt gaccatccac acatagactg 1260 cgcattttat gaggtgcctc ccaggatttg gtctctcctg ggggtcaagt ctgccagttt 1320 gaaacctttg gttaagcaaa ctgcggtgtc actcttcggt ggctcgtcat ctactgactt 1380 ctcaagttgt gttgggatag cccagattgg ggacaatccg ttcctgataa ggcatcaaag 1440 cacgacttgc agtggatggt cgggctcccc gctctaccac aaaggttgcg tggttggtct 1500 gcatataggt gctgcggatg gttataatgt ggcatctaat gtggcctggt acttccatac 1560 cttcaagaag gaagtagtcg ttgagtctcc gtttgagatt tacggcaaat tccgggaggc 1620 aaactctgag gagtatgacg agagtctacg acatggagta gaatatgcgg agtatgactt 1680 ctctggtgat accatccggg cgtcttccaa cacctgggtg cgagagagag agaggtacca 1740 cgctgaggaa cgtcgtaagt ccggccagcc tagctgggca gaccgctttg gtgacgacag 1800 tggcgaggat gttgatatcg agacatcgca tcccgtagca ccgtcaatac ccagagcgcg 1860 gcagaaaagg tcaaagcgcg ttgagcagtt cgtcgacgcg gtttctgaat gttccttctc 1920 gttcgagtca gctcacgagg ggataattcc tgagacctca gcttatgacc acgttccttt 1980 aaactgccag ggggcgggct cgagccttcg ggcgagtccg cccttggacg gcttatccaa 2040 ctcggagaat accactggga ctcccttggt gactccctcc cttccgacgg aatgcccttc 2100 agctacgttg gaaaatcggt tgtcatcttt ggagaacatg ctgggaaaag tgtctgcgca 2160 gctgtcaaag acgcaatctc agtattccca gatcttgagg gatttggctg gcctgagagg 2220 ggaagtaaag cagagctcga ctccctcatc ctccaagccg gtcggttcaa cagaacggta 2280 tgtccctccg ggctcgcgca agcagtccag tcactccaag aaaggtaccc aaaagtcccc 2340 ccaaggcgtt gcctcaggga cgaatggaga ttcgacgaca tcttcgatga agtcgaaaga 2400 atcttctgcg aaaccggcga agtgaacacc gcctcctcgc cgggggttcc gctaacgggt 2460 ctcgctaatt caaacggcga ggttcggaag cttgcgagag acttggtttg tttagctgtg 2520 gtggagcgtt tgaatgcctt agcctcggtt gacccccgcc agcataactg gacacccagg 2580 gagctggtag agaaaggtct ttgtgaccct gtgcgcttgt ttgtcaagaa cgagccacac 2640 ccacagagga aattgcgtga acgtcgattc aggctgattt cttctgtttc tctagttgac 2700 cagctggtgg agcggatgct tttcgggcca cagaacaaca ccgagatttc aacttggtgg 2760 cagtggccct caaagccggg catgggtctg ttgactcatg aacaaatccg tttggtgtgg 2820 gatgatgtat ttcagaagca ccaggcccac cctgcggctg aggcagacat atcggggttt 2880 gactggtccg ttcaggactg ggagttgtgg tcagacctcg cgatccgaat aaacaggggg 2940 aattttcagg gaaacctcag gaaagcggct atcagccgtt attactgttt tatgaactct 3000 gttttccagc tctcagatgg aactctcatc cagcaggagt tgccaggatt gatgaaatcc 3060 ggttcttact gcacctcttc tacaaattca cgcatacgct gcctaatggc tgagctcatc 3120 ggttcgccat ggtgcatagc tatgggtgat gattccgtag aggggtggat tgagggagcc 3180 caatccaagt acgccgcgtt aggtcacacc tgcaaggagt actacccgtg caagaccaga 3240 ggccgtgagc ttctggaatt caatttctgt tcacacttga tcaggaaggg tcatgctgag 3300 ctgacatcat ggccgaaggc gcttttccgc tttctgtcca gcaagcatga ggattttgaa 3360 gatctgtggg ttgagctcca cacttgcggg gtgtggagca ggatcgaaca atatctacgt 3420 gggatagggc gagtctccca caaagatggc caggaagggc aagaaaatca gctccaacca 3480 gggccagcaa ggaaagaaga agagtcggcg tccccgtggg cgttcggcgg agccccagct 3540 tcaacgggct ccagtggctc aggcctcccg gatatctggg acggttcctg gtccactatc 3600 ttctagctcc tggccggtcc actccgtgga attcctaatg gattttaagc ggagtgccac 3660 atcagcagaa gcgacgacat tcaactgtgt gccgttcaat ctgcctcggg tgtggagtct 3720 tgcgcgttgt tactcactgt ggaagccaac acggtgggat gtcatctacc tccctgaggt 3780 tagtgcggcg acagctggaa gtattgagat gtgctatctc tacgactacg ctgacgccat 3840 tccaagtgac acgggcaaga tgagcaggac ggcgggcttc gtcacctcta gcgtttggta 3900 cggcgctgag ggctgccact tgttgagtgg cggcacagca cgaaatgccg tggtcgcctc 3960 gatggattgc tctcgagtcg gctggagacg cgttactagt tcaataccta gtagcgtgga 4020 tcccaacgtc gtaaacacca tactgccagc aaggctagct gtgcggtcgt cgatcaaacc 4080 gacggttgat gatgtgccgg ggaaactcta cgccatcgtc agtatggtcc tgcgggatcc 4140 ggttgatcca acactcaata cgtgaaccgg gtctagtgga ggtatgtatt ggcaccagtg 4200 atgatccacg gatgagctca gagatcgact accctgaaaa ggatgttgag cgttctagaa 4260 acgcgggctt aatcctacga gatgatactg gtgactaccc cacgtgagga gttgtactca 4320 ctttacaatc caaaacaacc catgcactgg atagtgctta cccagttggt ttcggggctg 4380 ctgggaggac ctcttcacac tccgaattcc ccattcattc cgagagaatt ctcgggatgg 4440 gtgggggag 4449 //