ID AJ608216; SV 1; linear; genomic RNA; STD; VRL; 4457 BP. XX AC AJ608216; XX DT 17-MAR-2004 (Rel. 79, Created) DT 17-MAR-2004 (Rel. 79, Last updated, Version 1) XX DE Rice yellow mottle virus complete genome, isolate Tz3 XX KW coat protein; complete genome; ORF1; ORF2a; ORF2b; ORF4; P1; protease; KW RNA-dependent RNA polymerase; VPg. XX OS Rice yellow mottle virus OC Viruses; Riboviria; Solemoviridae; Sobemovirus. XX RN [1] RP 1-4457 RA Fargette D.; RT ; RL Submitted (18-NOV-2003) to the INSDC. RL Fargette D., Dgpc, Ird, BP 64501, 34394 Montpellier cedex 5, FRANCE. XX RN [2] RX DOI; 10.1128/JVI.78.7.3252-3261.2004. RX PUBMED; 15016846. RA Fargette D., Pinel A., Abubakar Z., Traore O., Brugidou C., Fatogoma S., RA Hebrard E., Choisy M., Sere Y., Fauquet C., Konate G.; RT "Inferring the evolutionary history of rice yellow mottle virus from RT genomic, phylogenetic, and phylogeographic studies"; RL J. Virol. 78(7):3252-3261(2004). XX DR MD5; 2a1b8a3dd731dafe0b8abbc3b40ee024. DR EuropePMC; PMC1061534; 15767440. DR EuropePMC; PMC371063; 15016846. DR EuropePMC; PMC3791421; 23830075. DR RFAM; RF01838; sobemo_FSE. XX FH Key Location/Qualifiers FH FT source 1..4457 FT /organism="Rice yellow mottle virus" FT /isolate="Tz3" FT /mol_type="genomic RNA" FT /country="Tanzania" FT /db_xref="taxon:31744" FT CDS 85..558 FT /product="P1" FT /function="possible roles in suppression of FT post-transcriptional gene silencing and viral movement" FT /note="ORF1" FT /db_xref="InterPro:IPR021971" FT /db_xref="UniProtKB/TrEMBL:Q709H6" FT /protein_id="CAE81331.1" FT /translation="MTRLEVLIRPTEQTAAKANAVGYTHALTWVWHSQTWDVDSVRDPS FT LRADFNPEKVGWVSVSFACTQCTAHYYTSEQVKYFTNIPPVHFDVVCADCERSVQLDDE FT IDREHQERNAEISACNARALSEGRPASLVYLSRDACDIPEHSGRCRFVKYLNF" FT CDS 611..2428 FT /product="protease and VPg" FT /note="ORF2a" FT /db_xref="GOA:Q709H5" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:Q709H5" FT /protein_id="CAE81332.1" FT /translation="MGSSVGGRFLTRTKETTRVDSNLLIVLAGLIAAAIVSERLPVTAS FT LWAIPSAIIANWIVLSAHESFSRFVEGVEIEPLSTLRYGKVQSAPRFDPSRGYVVDVSY FT NGHVIPVILDFTTTTALSVPQRVNPGVSMEASRGGLPPTSVKLEDVPPSVVVLYHDSVR FT LGLGTRVRTPTGRDLLMTNHHIAALEPNGIAYKGHLKKVALDAPVIACDHPHIDCAFYE FT VPPKIWSLLGVKSASLKPLVKQTAVSLFGGSSSTDFSSCVGIAQIGDNPFLIRHQSTTC FT SGWSGSPLYHKGCVVGLHIGAADGYNVASNVAWYFHTHKKEVIVESPFEIYGKFREANS FT EEYDESLRHGVEYAEYDFSGDTIRASSNTWVRERERYHAEERRKSGQLSWADRFGDDSG FT EDVDIETSHPVAPSISKARRKRSKRVEQFVDAVSECSFSFESAHEGVVPETSAYDHVPL FT NCQGAGSSLRASPPLDGLFNSESTAGTPLVTPSLPTECPSATLEGRVSSLENMLGKVSA FT QLSKTQSQYSQILKDLAGLRGEVKQSLTPSSSKPAGSTERYVPPGSRKQSNHSKKSTQK FT SPPGDASGTSGGSTTSSMRSRESSAKPAK" FT CDS <2095..3609 FT /product="RNA-dependent RNA polymerase" FT /note="ORF2b" FT /note="ORF2b produced by a -1 frameshift in ORF2a, FT translation occurs as an ORF2a-ORF2b fusion protein" FT /db_xref="GOA:Q709H4" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:Q709H4" FT /protein_id="CAE81333.1" FT /translation="MPFSYVGGSGVIFGEHAGKSVCAAVKDAISVFPDLEGFGWPERGS FT KAELDSLILQAGRFNRTVCPSGLAQAVQSLQEKYPKVPPRRCLRDEWRFDDIFDEVERI FT FCETGEVNAASSPGVPLTSLANSNGEVRKLARDLVCLAVVERLNALASVDPRQHNWTPR FT ELVEKGLCDPVRLFVKNEPHPQKKLRERRFRLISSVSLVDQLVERMLFGPQNNTEISTW FT WQWPSKPGMGLLTREQIRLVWDDVFQKHQAHPAAEADISGFDWSVQDWELWSDLAIRIN FT RGNFQGNLRRAAISRYYCFMNSVFQLSDGTLIQQELPGLMKSGSYCTSSTNSRIRCLMA FT ELIGSPWCIAMGDDSVEGWIEGAQSKYAALGHTCKEYYPCKTRGRELVEFNFCSHLIRR FT GHAELTSWPKALFRFLSSKHEDFEDLWVELHTCGVWGRIEQYLRGIGRVSHKDGQEGQE FT NQLQPGSARKEEEPSPSWAVGGAPASTGSNGSGLPDIWDGSWTTIF" FT CDS 3449..4171 FT /product="coat protein" FT /note="ORF4" FT /db_xref="GOA:Q9DH44" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q9DH44" FT /protein_id="CAE81334.1" FT /translation="MARKGKKTNSNQGQQGKKKSRRPRGRSAEPQLQRAPMAQASRISG FT MVPGPLSSNTWPIHRAVEFLMDFKRSATSADAVTINCVPFNLPRVWNLARCYSLWKPTK FT WDVVYLPEVGAATAGSIEMCYLYDYADAIPSDTGKMSRTAGFVTSSVWYGAEGCHLLSG FT GTARNAVVASMDCSRVDWKRVTSSIPSAVDPNVVNTILPARLAVRSSIKPAVSDTPGKL FT YAIVSMVLRDPVDPTLNT" XX SQ Sequence 4457 BP; 975 A; 1152 C; 1283 G; 1047 T; 0 other; acaattgaag ctaggaaagg agcatattgc gcaagcgatc cctccttccg acgaacaatt 60 gtagccgctg actgcctcgt gtgtatgaca cggttggaag ttcttatacg accgactgag 120 cagacagcgg caaaagccaa cgccgtgggc tatacgcacg cactcacctg ggtttggcat 180 tctcagacct gggacgttga ttctgtgaga gacccctctc tcagagccga cttcaacccc 240 gagaaggttg gttgggtgtc tgtgtcgttc gcctgtactc agtgcacggc tcactactat 300 acgagtgagc aggtgaagta tttcaccaac atcccgccgg ttcatttcga cgtggtgtgt 360 gccgattgcg agcgtagtgt tcaattggac gacgagatcg accgcgaaca ccaagagcgt 420 aacgcagaga tttctgcctg caacgctcgg gccttgagtg aaggaagacc agcaagtttg 480 gtttacctct ctcgggacgc ttgtgatatt cctgagcact ccggaaggtg ccggtttgtt 540 aagtacctca atttctgagg aaacaacctg ccgacatcca aggaacggtc ttggttcaga 600 ctaactcggg atgggctctt ctgttggtgg tcgctttctc actcgcacca aggaaacgac 660 gagggtggac tccaacctcc tcatcgtctt ggctgggttg atagcggccg cgatagtctc 720 agagcgccta cccgtgacgg cgtcattgtg ggcaatcccc tcagctatca tagcaaactg 780 gatcgtgctg tcagctcacg agagcttcag ccggttcgtt gagggggttg agattgagcc 840 cttgtccaca ctccggtatg gcaaggttca gtctgcccct aggttcgatc cctctcgggg 900 ttacgtggtt gatgtttcat acaatggcca cgtgatcccg gtgatattgg actttactac 960 gacaacagct ttgtcggttc cccaaagagt aaatcctggg gtctcgatgg aggctagtcg 1020 tggagggctc cctccgacgt ccgtcaaact cgaagatgtg ccgccgagtg ttgtggttct 1080 ataccacgac tctgtcaggc ttggcctggg aactagagtg cgtactccaa ctggtcgtga 1140 cttgctcatg accaatcacc atatcgctgc tttggaaccc aatggtatcg cgtacaaggg 1200 tcaccttaag aaagtggctc tggacgcgcc agtcatcgct tgtgaccatc cacacataga 1260 ctgcgcgttt tacgaggtgc ctcccaagat ttggtctctc ttgggggtta agtctgccag 1320 tttgaagcct ctggttaaac aaactgcggt gtcactcttc ggtggctcgt catctactga 1380 cttctcaagt tgtgttggga tagcccagat tggagacaat ccgtttctga taaggcatca 1440 aagcacgact tgcagtgggt ggtcgggctc cccgctctac cacaaaggtt gcgtggttgg 1500 cctgcatata ggtgctgcgg atggttataa tgtggcatct aatgtggctt ggtacttcca 1560 tactcacaag aaggaagtga tcgttgagtc tcctttcgag atttacggga aattccgtga 1620 ggcgaactcc gaggagtatg acgagagtct acgacacgga gtggaatatg cggagtacga 1680 cttctctggt gataccatcc gggcgtcttc caacacctgg gtgcgtgaga gagagaggta 1740 ccacgcggag gaacgtcgta agtccggcca gcttagctgg gcagatcgct ttggtgacga 1800 cagtggcgag gatgttgata tcgagacatc gcatcccgta gcaccgtcaa tatctaaggc 1860 gcggcggaaa cggtcaaagc gcgttgagca gttcgtcgac gcggtttctg agtgctcctt 1920 ctcgtttgag tcagctcacg agggggttgt tcctgagacc tcagcttatg accacgttcc 1980 tttaaactgc cagggggcgg gctcgagcct tcgggcgagt ccgcccttgg acggcttatt 2040 caactcggag agtaccgctg ggactccctt ggtgactccc tcccttccga cggaatgccc 2100 ttcagctacg ttggagggtc gggtgtcatc tttggagaac atgctgggaa aagtgtctgc 2160 gcagctgtca aagacgcaat ctcagtattc ccagatcttg aaggatttgg ctggcctgag 2220 aggggaagta aagcagagct tgactccctc atcctccaag ccggccggtt caacagaacg 2280 gtatgtccct ccgggctcgc gcaagcagtc caatcactcc aagaaaagta cccaaaagtc 2340 ccccccaggc gatgcctcag ggacgagtgg aggttcgacg acatcttcga tgaggtcgag 2400 agaatcttct gcgaaaccgg cgaagtgaat gccgcttcct cgccgggggt accgctaacg 2460 agtcttgcca attccaacgg cgaggttcga aagctagcga gagatttggt atgtttagct 2520 gtggtagagc gattgaatgc cttagcctcg gttgaccccc gccagcataa ctggacaccc 2580 agggagctgg tagagaaagg tctgtgtgac cccgtgcgtt tgttcgttaa gaatgaacca 2640 cacccacaga agaaattgcg tgagcgcaga ttcaggctga tttcttctgt ttctctagtt 2700 gaccagctgg tggagcggat gctctttggg cctcagaaca acaccgagat ttccacttgg 2760 tggcagtggc cctcaaagcc gggcatgggt ctgttgactc gtgaacaaat ccgcttggtg 2820 tgggacgatg tgttccagaa gcaccaggcc caccctgcgg ctgaggcaga catatcgggg 2880 tttgactggt ccgttcagga ctgggagttg tggtcagacc tcgcgatccg aataaacaga 2940 gggaatttcc agggaaacct caggagagcg gcgattagtc gttactactg ttttatgaac 3000 tctgttttcc agctctcaga tggaactctc atccagcagg agttgcctgg gttgatgaaa 3060 tccggctctt actgcacctc ttccaccaac tcgcgcatac gctgcctcat ggctgagctc 3120 attggctcgc cgtggtgcat agctatgggt gatgattcag tggaggggtg gattgagggg 3180 gcccaatcca agtacgccgc gctaggtcac acctgcaagg agtactaccc atgtaagacc 3240 aggggccgtg agctcgtgga attcaacttc tgttcacact tgatcaggag gggtcatgct 3300 gagctaactt catggccgaa ggcgctcttt cgctttctgt caagcaagca tgaggatttt 3360 gaagatctgt gggttgagct gcacacgtgc ggggtgtggg gcaggatcga acaatacctg 3420 cgtgggatag ggcgtgtctc ccacaaagat ggccaggaag ggcaagaaaa ccaactccaa 3480 ccagggtcag caaggaaaga agaagagccg tcgccctcgt gggcggtcgg cggagcccca 3540 gcttcaacgg gctccaatgg ctcaggcctc ccggatatct gggatggttc ctggaccact 3600 atcttctaac acctggccga tccaccgcgc cgttgagttc ttaatggact tcaaacggag 3660 cgccacatca gcagacgcgg tcacaatcaa ttgtgtaccg tttaatctgc ctcgggtgtg 3720 gaatcttgca cgttgttact ctttgtggaa gccaacaaag tgggacgtcg tctaccttcc 3780 tgaggtgggc gcggcaacgg ccggaagtat cgagatgtgt tatctctacg actacgccga 3840 tgctatccca agtgacacgg gtaagatgag caggacggcg ggcttcgtca cctctagcgt 3900 ttggtacggc gctgagggct gccacttgtt aagtggcggc acagcacgaa atgccgtggt 3960 cgcctcgatg gattgttccc gagtcgactg gaaacgcgtc actagttcaa tacctagtgc 4020 cgtggatccc aacgtcgtaa acaccatact gccggctagg ctagccgtgc gatcgtcgat 4080 caaaccggcg gtaagcgata cgccaggtaa actgtacgct atcgttagta tggtcctgcg 4140 ggatccggtt gatccaacac tcaatacgtg aaccggatct catggagata ggtattggca 4200 ccagtgatga tcaacgggct agctcagaga tcgactaccc tgaaaaggat gttgagcgtt 4260 ctctcgaacg cgggcttagt cctaagagac catactggcg cctatcccat gtggggagtt 4320 gcacccacgt tatcaaccca aggcaacccc cgcgttggat agcgcttacc cagctggttt 4380 cggagctgct gggaggacct tttcacactc cgaattcctc attctttccg agagaattct 4440 cgggatgggt gggggag 4457 //