ID AJ608215; SV 1; linear; genomic RNA; STD; VRL; 4448 BP. XX AC AJ608215; XX DT 17-MAR-2004 (Rel. 79, Created) DT 17-MAR-2004 (Rel. 79, Last updated, Version 1) XX DE Rice yellow mottle virus complete genome, isolate Tz11 XX KW coat protein; complete genome; ORF1; ORF2a; ORF2b; ORF4; P1; protease; KW RNA-dependent RNA polymerase; VPg. XX OS Rice yellow mottle virus OC Viruses; Riboviria; Solemoviridae; Sobemovirus. XX RN [1] RP 1-4448 RA Fargette D.; RT ; RL Submitted (18-NOV-2003) to the INSDC. RL Fargette D., Dgpc, Ird, BP 64501, 34394 Montpellier cedex 5, FRANCE. XX RN [2] RX DOI; 10.1128/JVI.78.7.3252-3261.2004. RX PUBMED; 15016846. RA Fargette D., Pinel A., Abubakar Z., Traore O., Brugidou C., Fatogoma S., RA Hebrard E., Choisy M., Sere Y., Fauquet C., Konate G.; RT "Inferring the evolutionary history of rice yellow mottle virus from RT genomic, phylogenetic, and phylogeographic studies"; RL J. Virol. 78(7):3252-3261(2004). XX DR MD5; d6c2ce3da91520daa584fa5d2f7113d1. DR EuropePMC; PMC1061534; 15767440. DR EuropePMC; PMC371063; 15016846. DR EuropePMC; PMC3791421; 23830075. DR RFAM; RF01838; sobemo_FSE. XX FH Key Location/Qualifiers FH FT source 1..4448 FT /organism="Rice yellow mottle virus" FT /isolate="Tz11" FT /mol_type="genomic RNA" FT /country="Tanzania" FT /db_xref="taxon:31744" FT CDS 83..556 FT /product="P1" FT /function="possible roles in suppression of FT post-transcriptional gene silencing and viral movement" FT /note="ORF1" FT /db_xref="InterPro:IPR021971" FT /db_xref="UniProtKB/TrEMBL:Q709I0" FT /protein_id="CAE81327.1" FT /translation="MTRLEVLIRPTEQTVAKAIAVGYTHTLTWVWYPQTWDVDSVNDPV FT LRADFDPDRAGWVAVSFACTQCTAHYYTCEQVKFFTNIPSVHYDVVCADCERRVQQDDE FT IDREHQERNAELSACNARALSEGRPASLVYLSRDACDIPGHSGTCRYNRYLNF" FT CDS 610..2427 FT /product="protease and VPg" FT /note="ORF2a" FT /db_xref="GOA:Q709H9" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:Q709H9" FT /protein_id="CAE81328.1" FT /translation="MGSSVVGRFLTRTKETTRVDSNLLIVLAGLIAAAIVSERLPVTAS FT LWAIPSAIIANWIVLSAHESFSRFVEGVEVEPLSTLRYGKVQSAPRFDPSRGYVVDVSY FT NGHVIPVILDFTTTTALSVPQRVNPGVSMEASRGGLPPTSVKLEDVPPSVVVLYHDSVR FT LGLGTRVRTPTGRDLLMTNHHIAALEPNGIAYKGHLKKVALDAPVIACDHPHIDCAFYE FT VPPKIWSLLGVKSASLKPLVKQTAVSLFGGSSSTDFSSCVGIAQIGDNPFLIRHQSTTC FT SGWSGSPLYHKGCVVGLHIGAADGYNVASNVAWYFHTFKKEVVVESPFEIYGKFREANS FT EEYDESLRHGVQYAEYDFSGDTIRASSNTWVREREKYHAEERRKSGQPSWADRFGDDDG FT EDVDIETSHPVASSISKTRQKRSKRIEQFVDAVSECSFSFESAHEGVIPETSAYDHVPL FT NYQGAGSSLRASPPLDGLSNSENTNGTPLETPSLPTACHSATLENRVSSLENMLGKVSA FT QLSKTQSQYSQLLKDLAGLREGVKQSSTPSSSKPAGSTERYVPPGSRKQSSHSKKGTQK FT SPPGVASGTSGGSTTSSMKSRESSAKPAK" FT CDS <2094..3605 FT /product="RNA-dependent RNA polymerase" FT /note="ORF2b" FT /note="ORF2b produced by a -1 frameshift in ORF2a, FT translation occurs as an ORF2a-ORF2b fusion protein" FT /db_xref="GOA:Q709H8" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:Q709H8" FT /protein_id="CAE81329.1" FT /translation="MPFSYVGKSGVIFGEHAGKSVCAAVKDAIPVFPALEGFGWPERGS FT KAELDSLILQASRFNRTVCPSGLAKAVQSLQERYPKVPPRRCLRDEWRFDDIFDEVERI FT LCETGEVNTASSPGVPLAGLANSNGEVRKLGRDLVCLAVVERLNALASVDPRQHNWTPR FT ELVEKGLCDPVRLFVKNEPHPQKKLRERRFRLISSVSLVDQLVERMLFGPQNNTEISTW FT WQWPSKPGMGLLTREQIRLVWDDVFQKHQAHPAAEADISGFDWSVQDWELWSDLAIRIN FT RGSFSGNLRKAAISRYYCFMNSVFQLSDGTLIQQELPGLMKSGSYCTSSTNSRIRCLMA FT ELIGSPWCIAMGDDSVEGWIEGAQSKYAALGHTCKEYYPCKTRGRELLEFNFCSHLIRK FT GHAELTSWPKALFRFLSSKHEDFEDLWVELHTCGVWGRIEQYLRGIGRVSHKDGQEGQE FT NQLQPKPARQEEPAPPWAFGGTPASTGSSGSGLPDIWDGSWSTIF" FT CDS 3448..4167 FT /product="coat protein" FT /note="ORF4" FT /db_xref="GOA:Q806Y3" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q806Y3" FT /protein_id="CAE81330.1" FT /translation="MARKGKKTNSNQNQQGKKSRRPRGRSAEPRLQRAPVAQASRISGM FT VPGPLSSNVWPVDRSVEFLMDFKRSATSGDATIFNCVPFNLPRVWSLARCYSLWKPTRW FT DVVYLPEVSAATAGSIEMCYLYDYADTIPSDTGKMSRTAGFVTSSVWYGAEGCHLLTGG FT SARNAVVASMDCSRVDWKRVTSSIPSGVDPNVVNTILPARLAVRSSIKPTVDDAPGKLY FT AIVSMVLRDPVDPTLNT" XX SQ Sequence 4448 BP; 978 A; 1159 C; 1275 G; 1036 T; 0 other; acaattgaag ctaggaaagg agcatattgc gtaagcgatc cctccttccg ccgaacaatt 60 gtagccactc tgctcatcgt gcatgacacg gttggaagtt cttatacgac cgacagagca 120 gactgtggca aaagccatcg ccgtgggcta tacgcacaca ctcacctggg tttggtatcc 180 gcagacctgg gacgttgatt ctgtgaacga tccagttctc agagccgact tcgaccccga 240 cagggccggt tgggttgctg tgtcgtttgc ctgtacccag tgcacagctc attactacac 300 gtgtgagcag gtgaaattct tcaccaacat cccgtcggtt cactacgacg tggtgtgtgc 360 tgattgcgag cgccgtgttc agcaggacga cgagatcgac cgtgagcacc aagagcgtaa 420 cgcagagcta tctgcttgta acgctagggc cttgagtgag ggaagaccag ccagtctggt 480 gtatctctct cgggacgctt gtgatatccc tgggcactcc ggaacgtgcc ggtataacag 540 gtacctcaac ttttgagagt gccgacctgc cgacatccaa ggaacggtct tggcttagac 600 tgacacggga tgggctcttc tgttgttggt cgctttctca ctcgaaccaa ggaaacgacg 660 agggtggatt ccaacctcct catcgtcttg gctgggttga tagcggccgc gatagtctca 720 gagcgcctac ccgtgacggc gtcattgtgg gcaatcccct cagctatcat agcaaactgg 780 atcgtgctgt cagctcacga gagcttcagc cggttcgtgg agggggttga ggttgagcct 840 ttgtcaacac ttcggtatgg taaggttcaa tctgccccga ggttcgatcc ctcccggggt 900 tatgtggtcg atgtttctta caacggccac gtgattccgg tgatattgga tttcaccacg 960 acgacagctt tgtcggttcc ccaaagagta aaccctgggg tctcgatgga ggcaagtcgt 1020 ggggggctcc cgccgacgtc cgtcaaactc gaagatgtgc cgccgagcgt tgtggttttg 1080 taccacgact ccgtcaggct aggcctggga actagggtgc gaactcccac aggtcgtgat 1140 ctcctcatga ccaatcacca tatcgccgcc ctggaaccta atggcatcgc gtacaagggt 1200 caccttaaga aagtggccct tgacgcgcca gtcattgcat gtgaccatcc acacatagac 1260 tgcgcgtttt acgaggtgcc tcccaagatt tggtctctct tgggggtcaa gtctgccagt 1320 ttgaaacctt tggttaaaca aactgcggtg tcactcttcg gtggctcgtc atctactgac 1380 ttctcaagtt gtgttgggat agcccagatt ggggacaatc cgtttctgat aaggcatcaa 1440 agcactactt gcagtgggtg gtcgggctcc ccgctctacc acaaaggttg cgtggttggc 1500 ttgcatatag gtgctgcgga tggttataat gtggcatcta atgtagcctg gtacttccat 1560 accttcaaga aggaagtggt cgttgagtct cctttcgaga tttacggcaa attccgggag 1620 gcgaactctg aggagtatga cgagagtcta cgacacggag ttcaatatgc ggagtatgac 1680 ttctctggtg atactatccg ggcgtcttcc aacacctggg tacgtgagag agagaagtac 1740 cacgctgagg aacgtcgtaa gtccggccag cctagctggg cagaccgttt tggtgacgac 1800 gatggcgagg atgttgatat cgagacatcg catcccgtag catcgtcaat atctaaaacg 1860 cggcagaaac ggtcaaagcg cattgagcag ttcgtcgatg cggtttccga gtgctccttc 1920 tcgttcgagt cagctcacga gggggtgatc cctgagacct cagcttatga ccacgttcct 1980 ttaaactacc agggggcggg ctcgagccta cgggcgagtc cgcccttgga cggcttatcc 2040 aactcggaga ataccaatgg gactcccttg gagactccct cccttccgac ggcatgccat 2100 tcagctacgt tggaaaatcg ggtgtcatct ttggagaaca tgctgggaaa agtgtctgcg 2160 cagctgtcaa agacgcaatc ccagtattcc cagctcttga aggatttggc tggcctgaga 2220 gagggagtaa agcagagctc gactccctca tcctccaagc cagccggttc aacagaacgg 2280 tatgtccctc cgggctcgcg aaagcagtcc agtcactcca agaaaggtac ccaaaagtcc 2340 cccccaggcg ttgcctcagg gacgagtgga ggttcgacga catcttcgat gaagtcgaga 2400 gaatcctctg cgaaaccggc gaagtgaata ccgcctcctc gccgggggtg ccgctagcgg 2460 gtcttgctaa ttcaaatggc gaggtccgca agctggggag agatttggta tgtttagctg 2520 tggtagagcg attgaatgcc ttagcctcgg ttgacccccg ccagcacaac tggacaccca 2580 gggagctggt agagaaaggt ctttgtgacc ccgtgcgctt attcgtcaag aatgagccac 2640 acccacagaa gaaattgcgt gaacgtcgat tcaggctgat ttcttctgtt tctctagtcg 2700 accagctggt ggagcggatg cttttcgggc ctcagaacaa caccgagatc tcaacttggt 2760 ggcagtggcc ctcgaagccg ggcatgggtc tgttgacccg tgaacaaatc cgtctggtgt 2820 gggacgatgt gttccagaag caccaagccc accctgcggc tgaggcagac atatcggggt 2880 ttgactggtc cgttcaggac tgggagttgt ggtcagacct cgcgatccga attaacagag 2940 ggagtttctc aggaaacctc aggaaagcgg ctattagccg ttattactgt ttcatgaact 3000 ctgttttcca gctctcagat ggaaccctca tccagcagga gttgcccggg ttgatgaaat 3060 ccggctctta ctgcacttct tcaacaaact cgcgtatacg ctgtctcatg gctgagctca 3120 ttggctcgcc gtggtgcata gctatgggtg atgattctgt ggaggggtgg attgaggggg 3180 cccaatccaa gtacgccgcg ttgggtcata cctgcaagga gtactaccca tgcaagacta 3240 ggggccgtga gctcctggaa ttcaatttct gttcacactt gatcaggaag ggtcatgctg 3300 agctaacctc atggccgaag gcgttgtttc gctttctgtc tagcaagcat gaggattttg 3360 aagatctgtg ggttgagctc cacacgtgcg gggtgtgggg caggatcgaa caatatctac 3420 gtgggatagg gcgtgtctcc cacaaagatg gccaggaagg gcaagaaaac caactccaac 3480 caaaaccagc aaggcaagaa gagccggcgc ccccgtgggc gttcggcgga accccggctt 3540 caacgggctc cagtggctca ggcctcccgg atatctggga tggttcctgg tccactatct 3600 tctaatgtct ggccggttga ccgctccgtg gaattcctga tggattttaa acggagcgcc 3660 acctcgggag atgcgaccat attcaattgt gtgccgttca atctaccccg agtgtggagt 3720 cttgcgcgtt gttactcctt gtggaagcca acaaggtggg acgtcgtcta cctccctgag 3780 gttagtgcgg cgacggctgg aagtatcgag atgtgctatc tctacgacta tgccgacact 3840 atcccaagtg acacgggtaa gatgagcagg acggcgggct tcgtcacctc tagcgtttgg 3900 tacggcgcgg agggctgcca tttgttaact ggcggctcag cacggaatgc cgtggtcgcc 3960 tcgatggatt gttcccgagt cgactggaaa cgcgttacta gttcaattcc tagtggcgtg 4020 gatcccaacg tcgtaaacac catactgcca gctaggctag ctgtgcggtc gtcgattaaa 4080 ccgacggttg atgatgcacc aggcaagctg tatgccatcg tcagtatggt cctgcgggat 4140 ccggttgacc caacactcaa tacgtgaacc ggacctagtg gaggcaggta ttggcaccaa 4200 tgatgaccaa cggactaact cagagatcaa ctaccctgaa aaggatgttg agcgtttgcg 4260 aacgcgggtt tagtcctaag agggcatatc ggtgtctgcc ccacgtgagg agttgcactc 4320 acatcaaccc aaagcaaccc agacactgga cagtgtttac ccggttggtt tcggagctgc 4380 cgggaggacc tctgcacact ccgaattccc catttcatcc gagagaattc tcgggatggg 4440 tgggggag 4448 //