ID AJ608213; SV 1; linear; genomic RNA; STD; VRL; 4449 BP. XX AC AJ608213; XX DT 17-MAR-2004 (Rel. 79, Created) DT 17-MAR-2004 (Rel. 79, Last updated, Version 1) XX DE Rice yellow mottle virus complete genome, isolate Ni2 XX KW coat protein; complete genome; ORF1; ORF2a; ORF2b; ORF4; P1; protease; KW RNA-dependent RNA polymerase; VPg. XX OS Rice yellow mottle virus OC Viruses; Riboviria; Solemoviridae; Sobemovirus. XX RN [1] RP 1-4449 RA Fargette D.; RT ; RL Submitted (18-NOV-2003) to the INSDC. RL Fargette D., Dgpc, Ird, BP 64501, 34394 Montpellier cedex 5, FRANCE. XX RN [2] RX DOI; 10.1128/JVI.78.7.3252-3261.2004. RX PUBMED; 15016846. RA Fargette D., Pinel A., Abubakar Z., Traore O., Brugidou C., Fatogoma S., RA Hebrard E., Choisy M., Sere Y., Fauquet C., Konate G.; RT "Inferring the evolutionary history of rice yellow mottle virus from RT genomic, phylogenetic, and phylogeographic studies"; RL J. Virol. 78(7):3252-3261(2004). XX DR MD5; de01508b9dc2c30c9051ad531482e25e. DR EuropePMC; PMC1061534; 15767440. DR EuropePMC; PMC371063; 15016846. DR EuropePMC; PMC3791421; 23830075. DR RFAM; RF01838; sobemo_FSE. XX FH Key Location/Qualifiers FH FT source 1..4449 FT /organism="Rice yellow mottle virus" FT /isolate="Ni2" FT /mol_type="genomic RNA" FT /country="Nigeria" FT /db_xref="taxon:31744" FT CDS 81..554 FT /product="P1" FT /function="possible roles in suppression of FT post-transcriptional gene silencing and viral movement" FT /note="ORF1" FT /db_xref="InterPro:IPR021971" FT /db_xref="UniProtKB/TrEMBL:Q709I8" FT /protein_id="CAE81319.1" FT /translation="MTRLEVLIRPTQQTVAKAIAAGYTHALTWVWHSQTWDVDAVNDPV FT LSADFNPEKVGWVSVSFACTQCTAHYYTCEQVKYFTNIPPVHYDVVCADCERSVQQDDE FT IDREHDERNAEISACNARALSEGRPATLVYLSRDACDIPEHSGTCRFDRYLNF" FT CDS 608..2425 FT /product="protease and VPg" FT /note="ORF2a" FT /db_xref="GOA:Q709I7" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:Q709I7" FT /protein_id="CAE81320.1" FT /translation="MGSSVVGRFLTRIKETTRVDSSLLIVLAGLIAAAIVSERLPVTAS FT LWAIPSAIIANWIVLSAHESFSRFVEGVEIEPMSTLRYGKVQSAPRFDPSRGYVVDVSY FT NGHVIPVILDFATTTALSVPQRVNPGVSMEASRGGLPPTSVKLEDVPPSVVVLYHDSVR FT LGLGTRVRTPTGRDLLMTNHHIAALEPNGIAYKGHLKKVALDAPVIACDHPHIDCAFYE FT VPPKIWSLLGVKSASLKPLVKQTAVSLFGGSSSTDFSSCVGIAQIGDNPFLIRHQSTTC FT SGWSGSPLYHKGCVVGLHIGAADGYNVASNVAWYFHTFKKEVVVESPFEIYGKFREANS FT EEYDESLKHGVEYAEYDFSGDTIRASSNTWVRERERYHAEERRKSGQLSWADRFGDDSG FT EDVDIATSHPVAPSISKARRKRSKRVEQFVDAVSECSFSFESAHEGIVPETSAYDHVPL FT NCQGAGSSLRASPPLDGLSNSENTAGTPSVTPSLPTECLSATLENRVSSLENMLGKVSA FT QLSNTQSQYSQILKDLAGLRGEVKQSLTPSSSKPAGSTERYVPPGSRKQSNHSKKSTQK FT SPPGDASGTSGGSTTSSTKSKESFAKPAK" FT CDS <2092..3606 FT /product="RNA-dependent RNA polymerase" FT /note="ORF2b" FT /note="ORF2b produced by a -1 frameshift in ORF2a, FT translation occurs as an ORF2a-ORF2b fusion protein" FT /db_xref="GOA:Q709I6" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:Q709I6" FT /protein_id="CAE81321.1" FT /translation="MPFSYVGKSGVIFGEHAGKSVCAAVKHAISVFPDLEGFGWPERGS FT KAELDSLILQAGRFNRTVCPSGLAQAVQSLQEKYPKVPPRRCLRDEWRFDDIFDEVERI FT LCETGEVNSASSPGVPLAGLANSNGEVRGLARDLVCLAVVERLNALASVDPRQHNWTPR FT ELVEKGLCDPVRLFVKNEPHPRKKLLERRFRLISSVSLVDQLVERMLFGPQNNTEISTW FT WQWPSKPGMGLLTPEQIRLVWDDVFQKHQAHPAAEADISGFDWSVQDWELWSDLAIRIN FT RGNFQGNLRRAAISRYYCFMNSVFQLSDGTLIQQELPGLMKSGSYCTSSTNSRIRCLMA FT ELIGSPWCIAMGDDSVEGWIEGAQSKYAALGHTCKEYYPCKTRGRELLEFNFCSHLIRR FT GHAELTSWPKALFRFLSSKHEDFEDLWVELHTCGVWGRIERYLRGIGRVSHKDGQEGQE FT NQLQPGAARKEEEPTPTWAFGGTPASTGSSGSGLPDIWDGSWSTIF" FT CDS 3446..4165 FT /product="coat protein" FT /note="ORF4" FT /db_xref="GOA:Q9DUP6" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q9DUP6" FT /protein_id="CAE81322.1" FT /translation="MARKGKKTNSNQGQQGKKKSRRPRGRSAEPQLQRAPVAQASRISG FT MVPGPLSSNTWPLHSVEFLADFKRSSTSADATTYNCVPFNLPRVWSLARCYSMWKPTRW FT DVVYLPEVSATVAGSIEMCFLYDYADTIPSDTGKMSRTAGFVTSSVWYGAEGCHLLSGG FT SARNAVVASMDCSRVGWKRVTSSIPSSVDPNVVNTILPARLAVRSSIKPAVGDTPGKLY FT AIVSMVLRDPVDPTLNT" XX SQ Sequence 4449 BP; 971 A; 1159 C; 1278 G; 1041 T; 0 other; acaattgaag ctaggaaagg agcatattgc gaaagcgatc cctccttccg acgaacaatt 60 gtagccacgc tgcatcgtgt atgacacggt tggaagttct tatacgaccg actcagcaga 120 ctgtggcaaa agccatcgcc gcgggctata cgcacgcact cacctgggtt tggcattctc 180 agacctggga cgttgacgct gtgaacgatc cagttctcag tgctgacttc aaccctgaga 240 aggttggttg ggtgtctgtg tcgtttgcct gtactcagtg cacagcccac tactacacgt 300 gtgagcaggt gaagtatttt accaatatac cgcctgttca ttacgacgtg gtttgtgctg 360 attgcgagcg cagtgttcaa caggacgacg agatcgaccg tgagcacgac gagcgtaacg 420 cagagatctc tgcctgcaac gctcgggctc tgagcgaggg gaggccagca accctggttt 480 acctttctcg agacgcttgc gatattcctg agcactctgg aacgtgccgg ttcgataggt 540 acctcaactt ttgaggaacc agtcctgccg acatccaagg agcggtcgtg gttcagacta 600 acacgggatg ggctcttctg ttgttggtcg ctttctcact cgcatcaagg aaacgacgag 660 ggtggactcc agcctcctca tcgtcttggc tgggttgata gcggccgcga tagtctcaga 720 gcgcctgccc gtgacggcgt cattgtgggc aatcccctca gctatcatag caaattggat 780 cgtgctgtca gctcacgaga gcttcagccg gttcgttgag ggggttgaga ttgagccaat 840 gtccacactt cggtatggca aggtgcagtc tgcccctagg ttcgatccct cccggggcta 900 tgtggtcgat gtgtcataca acggccatgt gatcccggtg atattggact tcgctacgac 960 aacggctctg tcggttcccc aaagagtaaa ccctggggtc tcgatggagg ctagccgtgg 1020 ggggctccct ccgacgtccg tcaaactcga agatgtgccg ccgagcgttg tggttttata 1080 ccacgactct gtcaggctag gcctgggaac tagagtgcga actcccacag gtcgtgatct 1140 cctcatgacc aatcaccata tcgctgctct ggaacccaat ggtatcgcgt acaagggtca 1200 ccttaagaaa gtggctctgg acgcgccagt cattgcatgt gaccatccac acatagactg 1260 cgcgttttac gaggtgcctc ccaagatctg gtctctcttg ggggtcaagt ctgccagttt 1320 gaaacccctg gttaagcaaa ctgcggtgtc actcttcgga ggctcgtcat ctactgactt 1380 ctcaagttgt gttgggatag cccagattgg ggacaatcca ttcctgataa ggcatcaaag 1440 cacgacttgc agtgggtggt cgggctcccc gctctaccac aaaggttgcg tggttggtct 1500 gcatataggt gctgcggatg gttataatgt ggcatctaat gtggcttggt atttccatac 1560 cttcaagaag gaggttgtcg ttgagtctcc atttgagatc tacggcaagt tccgagaagc 1620 aaactccgag gagtatgacg agagtctaaa acacggggtt gagtatgcgg agtacgactt 1680 ctctggtgat accatccggg cgtcttccaa cacctgggtg cgtgagagag agaggtacca 1740 cgctgaggaa cgtcgtaagt ccggccagct tagctgggca gatcgctttg gtgacgacag 1800 tggcgaggat gttgatatcg cgacatcaca tcccgtagca ccgtcaatat ctaaggcgcg 1860 gcggaaacgg tcaaagcgcg ttgagcagtt cgttgacgcg gtttctgagt gctccttttc 1920 gttcgagtca gctcacgaag ggatcgtccc agagacctct gcttatgacc acgttccttt 1980 aaactgccag ggggcgggct cgagccttcg ggcgagtccg cccttggacg gcttatccaa 2040 ctcggagaat accgctggga ctccctcggt gactccctcc cttccgacgg aatgcctttc 2100 agctacgttg gaaaatcggg tgtcatcttt ggagaacatg ctgggaaaag tgtctgcgca 2160 gctgtcaaac acgcaatctc agtattccca gatcttgaag gatttggctg gcctgagagg 2220 ggaagtaaag cagagcttga ctccctcatc ctccaagccg gccggttcaa cagaacggta 2280 tgtccctccg ggctcgcgca agcagtccaa tcactccaag aaaagtaccc aaaagtcccc 2340 cccaggcgat gcctcaggga cgagtggagg ttcgacgaca tcttcgacga agtcgaaaga 2400 atcctttgcg aaaccggcga agtgaattcc gcctcctcgc cgggggtacc gcttgcgggc 2460 cttgctaatt ccaatggtga ggtccgtggg ctagcgagag atttggtgtg tttagctgtg 2520 gtagagcgat tgaatgcttt agcctcggtt gacccccgcc agcataactg gacacccagg 2580 gagctggtag agaaaggtct ttgcgaccct gtgcgcttgt ttgtcaagaa tgagccacac 2640 ccacggaaga aattgcttga acgtcgattc aggctgatct cttccgtttc tctagttgac 2700 cagctggtgg agcggatgct tttcgggcct cagaacaaca ccgagatttc aacttggtgg 2760 cagtggccct caaagccggg catgggtctt ttgacccctg aacaaatccg tttggtgtgg 2820 gacgatgtgt tccagaagca ccaggcccac cctgcggctg aggcagacat atcggggttt 2880 gactggtccg ttcaggactg ggagttgtgg tcagacctcg cgattcgaat aaacaggggg 2940 aatttccagg gaaacctcag gagagcggct atcagccgct actactgttt tatgaactct 3000 gttttccaac tctcagatgg aacccttatc cagcaggagt tgcccggatt aatgaagtcc 3060 ggctcttact gcacctcgtc cacgaactca cgcattcgct gcctcatggc tgagctcatc 3120 ggctcgccgt ggtgtatagc aatgggtgat gattctgtgg aggggtggat tgagggagcc 3180 caatccaagt acgctgcgct aggtcacact tgcaaggagt actacccatg taagaccaga 3240 gggcgtgagc tcctggaatt caacttctgt tcgcacttga tcaggagggg tcatgctgag 3300 ctaacttcat ggccgaaggc gttgtttcgc tttctgtcta gcaagcatga ggattttgaa 3360 gatctgtggg ttgagcttca cacgtgcggg gtgtggggcc gaatcgaacg atatctgcgt 3420 gggataggga gagtctccca caaagatggc caggaagggc aagaaaacca actccaacca 3480 ggggcagcaa ggaaagaaga agagccgacg cccacgtggg cgttcggcgg aaccccagct 3540 tcaacgggct ccagtggctc aggcctcccg gatatctggg atggttcctg gtccactatc 3600 ttctaacacc tggccgctcc actccgttga gttccttgcg gacttcaagc ggagttccac 3660 atcggcggac gcgacgacat acaactgtgt gccgttcaat ctgcctcggg tgtggagtct 3720 tgcacgttgt tactcgatgt ggaagccaac acggtgggat gtcgtctacc tcccagaggt 3780 tagcgcgaca gttgctggga gtatcgagat gtgttttctc tacgactacg ctgacacaat 3840 cccaagtgac acgggcaaga tgagcaggac ggcgggcttc gtcacctcca gcgtttggta 3900 cggcgcggag ggctgccatt tgttaagtgg cggctcagca cgaaatgccg tggtcgcctc 3960 gatggactgt tcccgagtcg gctggaaacg cgttactagt tctattccta gtagcgtgga 4020 tcccaacgtc gtaaacacca tactgccagc aaggctagct gtgcgatcgt cgatcaagcc 4080 ggcggttggc gatacaccgg ggaaactcta cgctatcgtc agtatggtcc tgcgggatcc 4140 ggttgatcca acactcaata cgtgaatcgg tcccagtgga gataggtatt ggcaccagtg 4200 atgatccacg gattagctca gagatcgact accctgaaaa ggatgttgag cgtttgcgaa 4260 cgcgggctta atcctacgag atgacactgg tgtctatccc acgtgaggag ttgcactcac 4320 gctttcaacc caaagcaacc catgcactgg atagtgctta cccagatggt tttcggagct 4380 actgggcgga cttttcacaa accgaattcc tcattccttc cgagagaatt ctcgggatgg 4440 gtgggggag 4449 //