ID AJ608212; SV 1; linear; genomic RNA; STD; VRL; 4449 BP. XX AC AJ608212; XX DT 17-MAR-2004 (Rel. 79, Created) DT 17-MAR-2004 (Rel. 79, Last updated, Version 1) XX DE Rice yellow mottle virus complete genome, isolate Ni1 XX KW coat protein; complete genome; ORF1; ORF2a; ORF2b; ORF4; P1; protease; KW RNA-dependent RNA polymerase; VPg. XX OS Rice yellow mottle virus OC Viruses; Riboviria; Solemoviridae; Sobemovirus. XX RN [1] RP 1-4449 RA Fargette D.; RT ; RL Submitted (18-NOV-2003) to the INSDC. RL Fargette D., Dgpc, Ird, BP 64501, 34394 Montpellier cedex 5, FRANCE. XX RN [2] RX DOI; 10.1128/JVI.78.7.3252-3261.2004. RX PUBMED; 15016846. RA Fargette D., Pinel A., Abubakar Z., Traore O., Brugidou C., Fatogoma S., RA Hebrard E., Choisy M., Sere Y., Fauquet C., Konate G.; RT "Inferring the evolutionary history of rice yellow mottle virus from RT genomic, phylogenetic, and phylogeographic studies"; RL J. Virol. 78(7):3252-3261(2004). XX DR MD5; 7d1d47d4d6618cee5528482e47da29e6. DR EuropePMC; PMC1061534; 15767440. DR EuropePMC; PMC371063; 15016846. DR EuropePMC; PMC3791421; 23830075. DR EuropePMC; PMC5125353; 27965688. DR RFAM; RF01838; sobemo_FSE. XX FH Key Location/Qualifiers FH FT source 1..4449 FT /organism="Rice yellow mottle virus" FT /isolate="Ni1" FT /mol_type="genomic RNA" FT /country="Nigeria" FT /db_xref="taxon:31744" FT CDS 81..554 FT /product="P1" FT /function="possible roles in suppression of FT post-transcriptional gene silencing and viral movement" FT /note="ORF1" FT /db_xref="InterPro:IPR021971" FT /db_xref="UniProtKB/TrEMBL:Q709J2" FT /protein_id="CAE81315.1" FT /translation="MTRLEVLIRPTQQTVAKAIAAGYTHALTWVWHSQTWDVDAVNDPV FT LSADFNPERVGWVSVSFACTQCTAHYYTCEQVKCFINIPPVHYDVVCADCERSVQQDDE FT VDREHDERNAEISACNARALSEGRPATLVYLSRDACDIPEHSGTCRFDKYLNF" FT CDS 608..2425 FT /product="protease and VPg" FT /note="ORF2a" FT /db_xref="GOA:Q709J1" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:Q709J1" FT /protein_id="CAE81316.1" FT /translation="MGSSVVGRFLTRTKETTRVDSSLLIVLAGLIAAAIVSERLPVTAS FT LWAIPSAIIANWIVLSAHESFSRFVEGVEIEPMSTLRYGKVQSAPRFDPSRGYVVDVSY FT NGHVIPVILDFATTTALSVPQRVNPGVSMEASRGGLPPTSVKLEDVPPSVVVLYHDSVR FT LGLGTRVRTPTGRDLLMTNHHIAALEPNGIAYKGHLKKVALDTPVIACDHPHIDCAFYE FT VPPRIWSLLGVKSASLKPLVKQTAVSLFGGSSSTDFSSCVGIAQIGDNPFLIRHQSTTC FT SGWSGSPLYHKGCVVGLHIGAADGYNVASNVAWYFHTFKKEVVVESPFEIYGKFREANS FT EEYDESLKHGVEYAEYDFSGDTIRASSNTWVRERTKYHAEERRKSGQLSWADRFGDDSG FT EDVDIETSHPVAPSISRARRKRSKRVEQFVDAVSECSFSFESAHEGIVPETSAYDHVPL FT NCQGAGSSLRASPPLDGLSNSENTAGTPSVTPSLPTECHSATLENRVSSLENMLGKVSA FT QLSKTQSQYSQILKDLAGLRGEVKQSLTPSSSKPAGSTERYVPPGSRKQSNHSKKSTQK FT SPPGDASGTSGGSTTSSMKSKESSAKPAK" FT CDS <2092..3606 FT /product="RNA-dependent RNA polymerase" FT /note="ORF2b" FT /note="ORF2b produced by a -1 frameshift in ORF2a, FT translation occurs as an ORF2a-ORF2b fusion protein" FT /db_xref="GOA:Q709J0" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:Q709J0" FT /protein_id="CAE81317.1" FT /translation="MPFSYVGKSGVIFGEHAGKSVCAAVKDAISVFPDLEGFGWPERGS FT KAELDSLILQAGRFNRTVCPSGLAQAVQSLQEKYPKVPPRRCLRDEWRFDDIFDEVERI FT LCETGEVNSASSPGVPLAGLANSNGEVRGLARDLVCLAVVERLNALASVDPRQHNWTPR FT ELVEKGLCDPVRLFVKNEPHPRKKLLERRFRLISSVSLVDQLVERMLFGPQNNTEISTW FT WQWPSKPGMGLLTPEQIRLVWDDVFQKHQAHPAAEADISGFDWSVQDWELWSDLAIRIN FT RGNFQGNLRRAAISRYYCFMNSVFQLSDGTLIQQELPGLMKSGSYCTSSTNSRIRCLMA FT ELIGSPWCIAMGDDSVEGWIEGAQSKYAELGHTCKEYYPCKTKGRELLEFNFCSHLIRR FT GHAELTSWPKALFRFLSSRHEDFEDLWVELHTCGVWSRIERYLRGIGRVSHKDGQEGQE FT NQLQPGAARKEEEPTPAWSFGGAPASTGSSGSGLPDIWDGSWSTIF" FT CDS 3446..4165 FT /product="coat protein" FT /note="ORF4" FT /db_xref="GOA:Q9DUP7" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q9DUP7" FT /protein_id="CAE81318.1" FT /translation="MARKGKKTNSNQGQQGKKKSRRPRGRSAEPQLQRAPVAQASRISG FT MVPGPLSSNTWPLHSVEFLADFKRSSTSADATTYNCVPFNLPRVWSLARCYSMWKPTRW FT DVVYLPEVSATVAGSIEMCFLYDYADTIPSDTGKMSRTAGFVTSSVWYGAEGCHLLSGG FT LARNAVVASMDCSRVGWKRVTSSIPSSVDPNVVNTILPARLAVRSSIKPTVDDVPGKLY FT AIVSMVLRDPVDPTLNT" XX SQ Sequence 4449 BP; 965 A; 1166 C; 1284 G; 1034 T; 0 other; acaattgaag ctaggaaagg agcatattgc gaaagcgatc cctccttccg acgaacaatt 60 gtagccacgc tgcatcgtgt atgacacggt tggaagttct tatacgaccg actcagcaga 120 ctgtggcaaa agccatcgcc gcgggctata cgcacgcact cacctgggtt tggcattctc 180 agacctggga cgttgacgct gtgaacgatc cagttctcag tgctgacttc aaccctgaga 240 gggttggttg ggtgtctgtg tcgtttgcct gtactcagtg cacagcccac tactacacgt 300 gtgagcaggt gaagtgtttc atcaatatac cgcctgttca ttacgacgtg gtttgtgctg 360 attgcgagcg cagtgttcaa caggacgacg aggtcgaccg tgagcacgac gagcgtaacg 420 cagagatctc tgcctgcaac gctcgggctc tgagcgaggg gaggccagca accctggtat 480 acctctctcg agacgcttgc gacattcctg agcactccgg aacgtgccgg tttgataagt 540 acctcaactt ttgagggacc agtcctgccg acatccaagg agcggtcgtg gtttagacta 600 acacgggatg ggctcttctg ttgttggtcg ctttctcact cgcaccaagg aaacgacgag 660 ggtggactcc agcctcctca tcgtcttggc tgggttgata gcggccgcga tagtctcaga 720 gcgcctgccc gtgacggcgt cattgtgggc aatcccctca gctatcatag caaattggat 780 cgtgctgtca gctcacgaga gcttcagccg gttcgttgag ggggttgaga ttgagccaat 840 gtccacactt cggtatggca aggtgcagtc tgcccccagg ttcgatccct cccggggtta 900 tgtggttgat gtttcgtaca atggccacgt gattccggtg atattggact ttgccacgac 960 gacagctctg tcggttcccc aaagagtaaa ccctggggtc tcgatggagg caagtcgtgg 1020 agggctcccg ccgacgtccg tcaaactcga agatgtgccg ccgagcgttg tggttttgta 1080 ccacgactct gtcaggctag gcctaggaac tagggtgcga actcccacag gtcgtgatct 1140 tctcatgacc aatcaccata tcgctgcctt agaacctaat ggtatcgcgt acaagggtca 1200 ccttaagaaa gtggctcttg acacgccagt cattgcatgt gaccatccac acatcgactg 1260 cgcgttttac gaggtgcctc ccaggatctg gtctctcctg ggggtcaagt ctgccagttt 1320 gaaacccctg gttaaacaaa ctgcggtgtc actcttcgga ggctcgtcat ctactgactt 1380 ctcaagctgt gttgggatag cccagattgg ggacaacccg ttcctgataa ggcatcaaag 1440 cacgacttgc agtgggtggt cgggctcccc gctctaccac aaaggttgcg tggttggctt 1500 gcatataggt gctgcggatg gttataatgt ggcatctaat gtggcctggt acttccatac 1560 cttcaagaag gaggttgtcg ttgagtctcc ctttgagatt tacggcaaat tccgagaagc 1620 aaactccgag gagtacgacg agagtctgaa acacggggtt gagtatgcgg agtatgactt 1680 ctctggtgat accatccggg cgtcttccaa cacctgggtg cgtgagagaa cgaagtacca 1740 cgctgaggaa cgtcgtaagt ccggccagct aagctgggca gatcgctttg gtgacgacag 1800 tggcgaggat gttgatatcg agacatcgca tcccgtagca ccgtcaatat ctagagcgcg 1860 gcggaaacgg tcaaagcgcg ttgagcagtt cgtcgacgcg gtttctgagt gttctttctc 1920 gtttgagtcg gctcacgagg ggattgtccc agagacctcc gcttatgacc acgttccttt 1980 aaactgccag ggggcgggct cgagccttcg ggcgagtccg cccttggacg gcttatccaa 2040 ctcggagaat accgctggga ctccctcggt gactccctcc cttccgacgg aatgccattc 2100 agctacgttg gaaaatcggg tgtcatcttt ggagaacatg ctgggaaaag tgtctgcgca 2160 gctgtcaaag acgcaatctc agtattccca gatcttgaag gatttggctg gcctgagagg 2220 ggaagtaaag cagagcttga ctccctcatc ctccaagccg gccggttcaa cagaacggta 2280 tgtccctccg ggctcgcgca agcagtccaa tcactccaag aaaagtaccc aaaagtcccc 2340 cccaggcgat gcctcaggga cgagtggagg ttcgacgaca tcttcgatga agtcgaaaga 2400 atcctctgcg aaaccggcga agtaaactcc gcttcctcgc cgggggtgcc gcttgcaggt 2460 cttgccaatt ccaatggcga ggttcgcggg ctagcgagag atttggtgtg tttagctgtg 2520 gtggagcgat tgaatgcttt agcctcggtt gacccccgcc agcataactg gacacccagg 2580 gagctggtag agaaaggtct ttgtgaccct gtgcgcttgt ttgtcaagaa cgagccacac 2640 ccacggaaga aattgcttga acgtcgattc aggctgattt cctccgtttc tctagttgac 2700 cagctggtgg agcggatgct tttcgggccc cagaacaaca ccgagatttc aacttggtgg 2760 cagtggccct caaagccggg catgggtctt ttgacccctg agcaaatccg tttggtgtgg 2820 gacgatgtgt tccagaagca ccaggcccac cctgcggctg aagcagacat atcggggttt 2880 gactggtccg ttcaggactg ggagttgtgg tcagacctcg cgatccgaat aaacaggggg 2940 aatttccagg gaaacctcag gagggcggct atcagccgtt actactgttt tatgaactct 3000 gttttccaac tctcagatgg aaccctcatc cagcaggagt tgcccggatt gatgaaatcc 3060 ggctcttact gcacttcatc cacgaactcg cgtattcgct gtctcatggc tgagctcatc 3120 ggctcgccgt ggtgtatagc gatgggcgac gattccgtgg aggggtggat tgagggagcc 3180 caatccaagt acgccgagct gggtcacacc tgcaaggagt actacccatg caagaccaag 3240 gggcgtgagc tcctggaatt caacttctgt tcacacctga tcaggagggg tcatgccgaa 3300 ctgacttcat ggccgaaggc gttgtttcgc tttctgtcca gtaggcatga ggattttgaa 3360 gatctgtggg ttgagcttca cacgtgcggg gtgtggagcc ggatcgaacg atatctacgt 3420 gggatagggc gtgtctccca caaagatggc caggaagggc aagaaaacca actccaacca 3480 ggggcagcaa ggaaagaaga agagccgacg cccgcgtggt cgttcggcgg agccccagct 3540 tcaacgggct ccagtggctc aggcctcccg gatatctggg atggttcctg gtccactatc 3600 ttctaacacc tggccgctcc actccgttga gttcctagcg gacttcaagc ggagttccac 3660 atctgcggat gcgacgacat acaattgtgt gccgttcaat ttgcctcggg tgtggagtct 3720 tgcacgttgt tactcgatgt ggaagccaac acggtgggat gtcgtctacc tcccggaggt 3780 tagtgcgacg gttgctggga gtatcgagat gtgttttctc tacgactatg ctgacacaat 3840 cccaagtgac acgggcaaga tgagcaggac ggcgggcttc gtcacctcca gcgtttggta 3900 cggcgcggag ggctgccact tattaagtgg tggcttagca cgaaatgccg tggtcgcctc 3960 gatggactgt tctcgagtcg gctggaaacg cgttactagt tctattccta gcagcgtgga 4020 tcccaacgtc gtaaacacca tactgccagc aaggctagct gtgcgatcgt cgatcaaacc 4080 gacggttgac gatgtgccgg ggaaactcta cgccatcgtc agtatggtcc tgcgggaccc 4140 ggttgatcca acactcaata cgtgaaccgg tcccagtgga gataggtatt ggcaccagtg 4200 atgatccacg gattagccca gagatcgact accctgaaaa ggatgttgag cgttagcgaa 4260 cgcgggctca atcctacgag atgataccgg tgcctatccc acgtgaggag ttgcactcac 4320 gctttcaatc caaagcaacc catgcactgg atagtgctta cccagatggt tttcggagct 4380 actgggcgga cttttcacaa accgaattcc cctttctttc cgagagaatt ctcgggatgg 4440 gtgggggag 4449 //