ID AJ608210; SV 1; linear; genomic RNA; STD; VRL; 4447 BP. XX AC AJ608210; XX DT 17-MAR-2004 (Rel. 79, Created) DT 17-MAR-2004 (Rel. 79, Last updated, Version 1) XX DE Rice yellow mottle virus complete genome, isolate Mg1 XX KW P1; VPg; ORF1; ORF4; ORF2a; ORF2b; protease; coat protein; complete genome; KW RNA-dependent RNA polymerase. XX OS Rice yellow mottle virus OC Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; OC Sobelivirales; Solemoviridae; Sobemovirus. XX RN [1] RP 1-4447 RA Fargette D.; RT ; RL Submitted (18-NOV-2003) to the INSDC. RL Fargette D., Dgpc, Ird, BP 64501, 34394 Montpellier cedex 5, FRANCE. XX RN [2] RX DOI; 10.1128/JVI.78.7.3252-3261.2004. RX PUBMED; 15016846. RA Fargette D., Pinel A., Abubakar Z., Traore O., Brugidou C., Fatogoma S., RA Hebrard E., Choisy M., Sere Y., Fauquet C., Konate G.; RT "Inferring the evolutionary history of rice yellow mottle virus from RT genomic, phylogenetic, and phylogeographic studies"; RL J. Virol. 78(7):3252-3261(2004). XX DR MD5; 9063a5024b30c7a940f0f91a6fe5b457. DR EuropePMC; PMC371063; 15016846. DR EuropePMC; PMC3791421; 23830075. DR RFAM; RF01838; sobemo_FSE. XX FH Key Location/Qualifiers FH FT source 1..4447 FT /organism="Rice yellow mottle virus" FT /isolate="Mg1" FT /mol_type="genomic RNA" FT /country="Madagascar" FT /db_xref="taxon:31744" FT CDS 81..554 FT /product="P1" FT /function="possible roles in suppression of FT post-transcriptional gene silencing and viral movement" FT /note="ORF1" FT /db_xref="InterPro:IPR021971" FT /db_xref="UniProtKB/TrEMBL:Q709K0" FT /protein_id="CAE81307.1" FT /translation="MTRLEVLIRPTLQTVEKAIAAGYTHTLTWIWHPQIWDVNGVSDPT FT LAADFNPERVGWVSVSFACTRCTAHYYTCEQVKFFTNIPSVHYDVVCADCERSVQQDDE FT IDREHDERNAEISACNARALSEGRPASLVYLSRDACDIPEHAGSCRFDKYLNF" FT CDS 607..2424 FT /product="protease and VPg" FT /note="ORF2a" FT /db_xref="GOA:Q709J9" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:Q709J9" FT /protein_id="CAE81308.1" FT /translation="MGSSVVGRFLTRTKETTRVDSNLLIVLAGLIAAAIVSERLPVTAS FT LWAIPSAIIANWIVLSAHESFSRFVEGVEIEPMSTLRYGKVQSAPRFDPSRGYVVDVSY FT NGHVIPVILDFTTTTALSVPQRVNPGVSMEASRGGLPPTSVKLEDVPPSVVVLYHDSVR FT LGLGTRVRTPTGRDLLMTNHHIAALEPNGIAYKGHLKKVTLDAPVIACDHPHIDCAFYE FT VPPKIWSLLGVKSASLKPLVKQTAVSLFGGSSSTDFSSCVGIAQIGDNPFLIRHQSTTC FT SGWSGSPLYHKGCVVGLHIGAADGYNVASNVAWYFHTFKRDVVVESPFEIYGKFREANS FT EEYDESLRHGVEYAEYDFSGDTIRASSNTWVRERERYHAEERRKSGQLSWADRFGDDSG FT EDVDIETSHPVAPSISKTRQKRSKRVEQFVDAASECSFSFESAHEGIVPETSAYDHVPL FT NCQGAGSSLRASPPLDGLSNSENTAGTPSVTPSLPTECPSATLENRVSSLENMLGKVSA FT QLSKTQSQYSQILKDLAGLRGEVKQSLTPSSSKPAGSTERYVPPGSRKQSNHSKKSTQK FT SPPGDASGTSGGSTTSSTKSKESSAKPAK" FT CDS <2091..3605 FT /product="RNA-dependent RNA polymerase" FT /note="ORF2b" FT /note="ORF2b produced by a -1 frameshift in ORF2a, FT translation occurs as an ORF2a-ORF2b fusion protein" FT /db_xref="GOA:Q709J8" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:Q709J8" FT /protein_id="CAE81309.1" FT /translation="MPFSYVGKSGVIFGEHAGKSVCAAVKDAISVFPDLEGFGWPERGS FT KAELDSLILQAGRFNRTVCPPGLAQAVQSLQEKYPKVPPRRCLRDEWRFDDIFDEVERI FT LCETGEVNSASSPGVPLTGLANSNGEVRRLARDLVCLAVVERLNALASVDPRQHNWTPR FT ELVEKGLCDPVRLFVKNEPHPQKKLRERRFRLISSVSLVDQLVERMLFGPQNNTEISTW FT WQWPSKPGMGLLTPEQIRLVWDDVFQKHQAHPAAEADISGFDWSVQDWELWSDLAIRIN FT RGNFQGNLRKAAISRYYCFMNSVFQLSDGTLIQQELPGLMKSGSYCTSSTNSRIRCLMA FT ELIGSPWCIAMGDDSVEGWIEGAQSKYAALGHTCKEYYPCKTKGRELLEFNFCSHLIRR FT GHAELTSWPKALFRFLSSKHEDFEDLWVELHTCGVWSRIERYLRGIGRVSHKDGQEGQE FT NQLQPKPARQEEEPTSSWAFGGAPASTGSSGSGVPDIWDGSWTTIF" FT CDS 3445..4164 FT /product="coat protein" FT /note="ORF4" FT /db_xref="GOA:Q9DUQ5" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q9DUQ5" FT /protein_id="CAE81310.1" FT /translation="MARKGKKINSNQSQQGKKKSRRPRGRSAEPQLQRAPVAQASRISG FT TVPGPLSSNTWPVHSVEFLMDFKRSATSADAVAFNCVPFNLPRVWSLARCYSLWKPTRW FT DVVYLPEVSAATAGSIEMCYLYDYADAIPSDTGKMSRTAGFVTSSVWYGAEGCHLLNGG FT SARNAVVASMDCSRVGWRRVTSSIPSSVDPNVVNTILPARLAVRSSIKPTVDDVPGKLY FT AIVSMVLRDPVDPTLNT" XX SQ Sequence 4447 BP; 967 A; 1143 C; 1287 G; 1050 T; 0 other; acaattgaag ctaggaaagg agcatattgc gaaagcgatc cctccttccg acgaacaatt 60 gtatccacgc tgctacgtgt atgacacggt tggaagttct tatacgaccg actttgcaga 120 ccgtggaaaa ggccattgcc gcgggctata cgcacacgct cacctggatt tggcatcctc 180 agatctggga cgttaacggt gtgagtgatc ccactcttgc cgctgacttc aaccccgaga 240 gggttggttg ggtgtctgtg tcatttgcct gtactcggtg cacggctcac tactatacgt 300 gtgagcaggt gaaattcttc accaacatcc cgtcggttca ttacgacgtg gtgtgtgccg 360 attgtgagcg cagtgttcag caggacgacg agatcgaccg cgaacacgac gagcgtaacg 420 cagagatttc tgcctgcaac gctcgggctt tgagtgaggg tcgaccagcc agtctggttt 480 acctctctcg ggacgcttgc gatatccccg agcacgccgg aagctgccgg tttgataagt 540 acctcaactt ttgagggaac actctgccga catccaagga gcggtcgtgg ttcagactaa 600 cacgggatgg gctcttctgt tgttggtcgc tttctcactc gcaccaagga aacgacgagg 660 gtggactcca acctcctcat cgtcttggct gggttgatag cggccgcgat agtctcagag 720 cgcctgcccg tgacggcgtc attgtgggca atcccctcag ctatcatagc aaactggatc 780 gtgctgtcag ctcacgagag cttcagccgg ttcgttgagg gggttgagat tgagcctatg 840 tccacgcttc ggtatgggaa ggttcagtct gctccccggt ttgatccctc ccggggttat 900 gtggtcgatg tttcgtacaa cggccacgtg attccggtga tattggactt caccacgact 960 acggccctgt cggttcccca aagagtaaac cctggggtct cgatggaggc tagtcgtggg 1020 gggctcccac cgacgtccgt caaactcgaa gatgtgccgc cgagcgttgt ggttttgtac 1080 cacgactctg tcaggctagg ccttggaact agggtgcgaa ctcccacggg tcgtgatttg 1140 ctcatgacca atcaccatat cgctgctcta gagcccaatg gcatcgcgta taagggtcac 1200 cttaagaaag tgactctaga cgcgccagtc atcgcatgtg accatccaca catagactgt 1260 gcgttttacg aggtgcctcc caagatctgg tctctcttgg gggtcaagtc tgccagtttg 1320 aaacctttgg ttaaacagac tgcggtgtca ctcttcggag gctcgtcatc cactgacttc 1380 tcgagttgtg ttgggatagc ccagattggg gataatccat tcctgataag gcatcaaagc 1440 acaacttgca gtggctggtc gggctccccg ctctaccaca aaggttgcgt ggttggctta 1500 catataggtg ctgcggatgg ttataatgtg gcatctaatg tagcctggta cttccatact 1560 ttcaaaaggg atgttgttgt tgagtctcca ttcgagattt acggcaaatt ccgggaagca 1620 aactctgagg agtatgacga aagtctgcgc catggggtgg aatatgcgga gtacgatttc 1680 tctggtgaca caatccgggc gtcttccaac acctgggtgc gtgagagaga gagataccac 1740 gctgaggaac gtcgtaagtc cggccagctt agctgggcag atcgttttgg tgacgacagt 1800 ggcgaggatg ttgatatcga gacatcgcat cccgtagcac cgtcaatatc taaaacgcgg 1860 cagaaacggt caaagcgcgt tgagcagttc gtcgacgcgg cttctgagtg ctccttctcg 1920 ttcgagtcag ctcacgaggg gattgtgcca gagacctcag cttatgacca cgttccttta 1980 aactgccagg gggcgggctc gagccttcgg gcgagtccgc ccttggacgg cttatccaac 2040 tcggagaata ccgctgggac tccctcggtg accccctccc ttccgacgga atgcccttca 2100 gctacgttgg aaaatcgggt gtcatctttg gagaacatgc tgggaaaagt gtctgcgcag 2160 ctgtcaaaga cgcaatctca gtattcccag atcttgaagg atttggctgg cctgagaggg 2220 gaagtaaagc agagcttgac tccctcatcc tccaagccgg ccggttcaac agaacggtat 2280 gtccccccgg gctcgcgcaa gcagtccaat cactccaaga aaagtaccca aaagtccccc 2340 ccaggcgatg cctcagggac gagtggaggt tcgacgacat cttcgacgaa gtcgaaagaa 2400 tcctctgcga aaccggcgaa gtgaactccg cttcctcgcc gggggtgccg ctgacgggcc 2460 ttgccaattc caatggtgag gtacggaggc tcgcgagaga tttggtatgt ttagctgtgg 2520 tggagcgatt aaatgcctta gcctcggttg acccccgcca gcataactgg acacccaggg 2580 agctggtaga gaaaggtctt tgtgaccctg tgcgtttgtt tgtcaagaac gagccgcacc 2640 cacagaagaa attgcgtgaa cgcagattca ggctgatttc ttctgtttct ctagttgacc 2700 agctggtgga gcggatgctt ttcgggccgc agaacaacac tgagatttca acttggtggc 2760 agtggccttc gaagccgggc atgggtctgt tgacccctga acaaatccgt ttggtgtggg 2820 acgacgtgtt ccagaagcac caagcccacc ctgcggctga ggcagacata tcggggtttg 2880 attggtccgt tcaggactgg gagttgtggt cagacctcgc gatccgtata aacagaggga 2940 attttcaggg aaacctcagg aaagcggcta tcagccgtta ttactgtttt atgaactctg 3000 ttttccagct ctcagatgga actctcatcc agcaggagtt acccgggctt atgaagtccg 3060 gctcttactg cacctcatcc accaattcac gcatacgctg cctaatggct gagctaatcg 3120 gctcgccctg gtgcatagct atgggtgatg attcggtgga aggatggatt gagggtgccc 3180 agtccaagta cgccgcgttg ggtcacacct gcaaggagta ctacccatgc aagaccaagg 3240 ggcgtgagct cctggaattc aacttctgtt cacacttgat caggaggggt catgctgagc 3300 tcacttcatg gccgaaggcg cttttccgct ttctgtcgag caagcatgag gactttgaag 3360 atctgtgggt tgagcttcac acgtgcgggg tgtggagcag gatcgaacga tatctgcgtg 3420 ggatagggcg agtctcccac aaagatggcc aggaagggca agaaaatcaa ctccaaccaa 3480 agccagcaag gcaagaagaa gagccgacgt cctcgtgggc gttcggcgga gccccagctt 3540 caacgggctc cagtggctca ggcgtcccgg atatctggga cggttcctgg accactatct 3600 tctaatacct ggccggtcca ctccgtggaa ttcctgatgg attttaagcg gagtgccaca 3660 tcggcggatg cggtagcatt taattgtgtg ccgtttaatc tgcctcgggt gtggagtctt 3720 gcacgttgtt actcgctgtg gaagccaaca cggtgggatg tagtttacct ccccgaggtg 3780 agcgcggcga cggctggaag tattgagatg tgttatctct acgactatgc cgatgctatc 3840 ccaagtgaca cgggcaagat gagcaggacg gcgggcttcg tcacctctag cgtttggtac 3900 ggcgcggagg gctgccattt gttgaatggc ggttcagcac ggaatgccgt ggtcgcctcg 3960 atggattgtt ctcgggtcgg ctggagacgc gtaactagtt caattcctag tagcgtggat 4020 cccaacgtcg taaataccat actgccagca aggctagctg tgcggtcgtc aatcaaaccg 4080 acggtcgatg atgtgccggg gaaactctat gctatcgtca gtatggtcct gcgggatccg 4140 gttgatccaa cactcaatac gtgaaccgga ttcaatggag ataggtattg gcaccagtga 4200 tgatccacgg attagctcag agatcgacta ccctgaaaag gatgttgagc gtttgcgaac 4260 gcgggctgag tcctacgaga tgatactggc gcctatccca tgtggggaat cgcacccacg 4320 tttcaaccca aagcgatcca tacgctggat agcgtttacc tggttggttt cggagctgcc 4380 aggaggacct cttcacactc cggattccac attctttccg agagaattct cgggatgggt 4440 gggggag 4447 //