ID AJ608209; SV 1; linear; genomic RNA; STD; VRL; 4450 BP. XX AC AJ608209; XX DT 17-MAR-2004 (Rel. 79, Created) DT 17-MAR-2004 (Rel. 79, Last updated, Version 1) XX DE Rice yellow mottle virus complete genome, isolate Ma77 XX KW coat protein; complete genome; ORF1; ORF2a; ORF2b; ORF4; P1; protease; KW RNA-dependent RNA polymerase; VPg. XX OS Rice yellow mottle virus OC Viruses; Riboviria; Solemoviridae; Sobemovirus. XX RN [1] RP 1-4450 RA Fargette D.; RT ; RL Submitted (18-NOV-2003) to the INSDC. RL Fargette D., Dgpc, Ird, BP 64501, 34394 Montpellier cedex 5, FRANCE. XX RN [2] RX DOI; 10.1128/JVI.78.7.3252-3261.2004. RX PUBMED; 15016846. RA Fargette D., Pinel A., Abubakar Z., Traore O., Brugidou C., Fatogoma S., RA Hebrard E., Choisy M., Sere Y., Fauquet C., Konate G.; RT "Inferring the evolutionary history of rice yellow mottle virus from RT genomic, phylogenetic, and phylogeographic studies"; RL J. Virol. 78(7):3252-3261(2004). XX DR MD5; 6285387f05efce34636dd921b361ebbf. DR EuropePMC; PMC1061534; 15767440. DR EuropePMC; PMC371063; 15016846. DR EuropePMC; PMC3791421; 23830075. DR RFAM; RF01838; sobemo_FSE. XX FH Key Location/Qualifiers FH FT source 1..4450 FT /organism="Rice yellow mottle virus" FT /isolate="Ma77" FT /mol_type="genomic RNA" FT /country="Mali" FT /db_xref="taxon:31744" FT CDS 81..554 FT /product="P1" FT /function="possible roles in suppression of FT post-transcriptional gene silencing and viral movement" FT /note="ORF1" FT /db_xref="InterPro:IPR021971" FT /db_xref="UniProtKB/TrEMBL:Q709K4" FT /protein_id="CAE81303.1" FT /translation="MPRLEVLIRPTQQTVAKAITAGYTHALTWVWHSQTWDVDAVNDPV FT LSADFNPAKVGWVSVSFACTRCTAHYYTSEQVKCFVNIPSVHYDVVCADCERSVQQGDE FT IDREHDERNAEISACNARALSEGRPASLVYLSRDACDIPEHSGTCRFDKYLNF" FT CDS 608..2425 FT /product="protease and VPg" FT /note="ORF2a" FT /db_xref="GOA:Q709K3" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:Q709K3" FT /protein_id="CAE81304.1" FT /translation="MGSSVVGRFLTRTKETTRVDSNLLIVLAGLIAAAIVSERLPVTAL FT LWAIPSAIIANWTVLSAHESFSRFVEGVEIEPMSTLRYGKVQSAPRFDPSRGYVVDVSY FT NGHVIPVILDFTTTTALSVPRSVNPGVSMEASRGGLPPTSVKLEDVPPSVVVLYHDSVR FT LGLGTRVRTPTGRDLLMTNHHIAALEPNGIAYKGHLKRVALDAPVIACDHPHIDCAFYE FT VPPKIWSLLGVKSASLKPLVKQTAVSLFGGSSSTDFSSCVGIAQIGDNPFLIRHQSTTC FT SGWSGSPLYHKGCVVGLHIGAADGYNVASNVAWYFHTFKKEVVVESPFEIYGKFREANS FT EEYDESLRHGVQYAEYDFSGDTIRASSNTWVRERERYHAEERRKSGQLSWADRFGDDSG FT EDVDIETSHPVAPSISKARRKRSKRVEQFVDAVSECSFSFESAHEGIVPETSAYDHVPL FT NCQGAGSSLRASPPLDGLFNSENTAGTPLATPSLPTECPSATLENRVSSLENMLGKVSA FT QLSKTQSQYSQILKDLAGLRGEVKQSLTPSSSKPAGSTERYVPPGSRKQSNHSKKSTQK FT SPPGDASGTSGGSTTSSTKSKESSAKPAK" FT CDS <2092..3606 FT /product="RNA-dependent RNA polymerase" FT /note="ORF2b" FT /note="ORF2b produced by a -1 frameshift in ORF2a, FT translation occurs as an ORF2a-ORF2b fusion protein" FT /db_xref="GOA:Q709K2" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:Q709K2" FT /protein_id="CAE81305.1" FT /translation="MPFSYVGKSGVVFGEHAGKSVCAAVKDAISVFPDLEGFGWPERGS FT KAELDSLVLQASRFNRTVCPSGLAQAVQSLQEKYPKVPPRRCLRDEWRFDDIFDEVERI FT LCETGEVNSASSPGVPLAGLANSNGEVRGLARDLVCLAVVERLNALASVDPRQHNWTPR FT ELVEKGLCDPVRLFVKNEPHPRKKLLERRFRLISSVSLVDQLVERMLFGPQNNTEISTW FT WQWPSKPGMGLLTPEQIRLVWDDVFQKHQAHPAAEADISGFDWSVQDWELWSDLAIRIN FT RGNFQGNLRRAAISRYYCFMNSVFQLSDGTLIQQELPGLMKSGSYCTSSTNSRIRCLMA FT ELIGSPWCIAMGDDSVEGWIEGAQSKYAALGHTCKEYYPCKTRGRELLEFNFCSHLIRR FT GHAELTSWPKALFRFLSSKHEDFEDLWVELHTCGVWGRIERYLRGIGRVSHKDGQEGQE FT NQLQPGAAREEEEPTPTWAFGGTPASTGSSGSGLPDIWDGSWSTIF" FT CDS 3446..4165 FT /product="coat protein" FT /note="ORF4" FT /db_xref="GOA:Q709K1" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q709K1" FT /protein_id="CAE81306.1" FT /translation="MARKGKKINSNQGQQGKKKSRRPRGRSAEPQLQRAPVAQASRISG FT TVPGPLSSNTWPLHSVEFLADFKRSATSADATTYNCVPFNLPRVWSLARCYSMWKPTRW FT DVVYLPEVSAAAAGSIEMCYLYDYADTIPSDTGKMSRTAGFVTSSVWYGAEGCHLLSGG FT SARNAVVASMDCSRVGWKRVTSSIPSGADPNVVNTILPARLAVRSSIKPTADDTPGKLY FT AIVSMVLRDPVDPTLNT" XX SQ Sequence 4450 BP; 966 A; 1170 C; 1288 G; 1026 T; 0 other; acaattgaag ctaggaaagg agcatattgc gaaagcgatc cctccttccg ccgaacaatt 60 gtagccacgc tgcgtcgtgc atgccacggt tggaagttct tatacgaccg actcagcaga 120 ctgtggcaaa agccatcacc gcgggctaca cgcacgcact cacctgggtt tggcattctc 180 agacctggga cgttgacgca gtgaacgatc cagttctcag cgccgacttc aaccccgcaa 240 aggttggttg ggtgtcagtg tcgtttgcct gtactcggtg tacagctcat tactacacta 300 gtgagcaggt gaagtgtttt gtcaacatcc catctgtcca ctacgacgtg gtgtgtgctg 360 attgcgagcg cagtgttcag cagggcgacg agatcgaccg cgagcacgac gagcgtaacg 420 cagagatttc tgcctgcaac gctcgggccc tgagtgaggg tagaccagca agtttggttt 480 atctttcacg ggacgcttgt gatatacccg agcactccgg cacgtgccgg ttcgacaaat 540 acctcaactt ctgaggaatc agtcctgccg acatccaagg agcggtcttg gcttagactg 600 acacgggatg ggctcttctg ttgttggtcg ctttctcact cgcaccaagg aaacgacgag 660 ggtggactcc aacctcctca tcgtcttggc tgggttgata gcggccgcga tagtctcaga 720 gcgcctgccc gtgacggcgt tattgtgggc aatcccctca gctatcatag caaactggac 780 cgtgctgtca gctcacgaga gcttcagccg gttcgttgag ggggttgaga ttgagcccat 840 gtccaccctt cggtatggca aggttcaatc tgcccccagg ttcgatccct cccggggtta 900 cgtggttgac gtgtcttaca acggccatgt gattccggtg atattagact ttaccacgac 960 gacagctctg tcggttcccc gaagcgtaaa tcccggggtc tcgatggagg cgagtcgtgg 1020 ggggctcccg ccgacgtccg tcaaactcga agatgtgccg ccgagcgttg tggttttgta 1080 tcacgactcc gtcaggctag gcctgggcac cagagtgcga actcccacgg gtcgtgatct 1140 cctcatgacc aatcaccata tcgctgcttt ggagcctaat ggcatcgcgt acaagggcca 1200 cctcaaaagg gtggctctgg atgcgccagt cattgcatgt gaccatccac acatagactg 1260 cgcgttttat gaggtgccgc ccaagatctg gtctctcttg ggggtcaagt ctgccagttt 1320 gaaacctttg gttaaacaga ctgcggtgtc actcttcggt ggctcgtcat ctactgactt 1380 ctcgagttgt gttgggatag cccagattgg ggataatccg ttcctgataa ggcatcaaag 1440 cacgacttgc agtggatggt cgggctcccc gctctaccac aaaggttgcg tggttggtct 1500 gcatatcggt gctgcggatg gttataatgt ggcatcgaat gtagcttggt actttcatac 1560 cttcaagaag gaagtagttg tggagtctcc attcgagatc tacggcaaat tccgtgaagc 1620 aaactccgag gagtatgacg agagtctacg tcacggggtc cagtatgcgg agtacgactt 1680 ctctggtgac acaatccggg catcttcaaa tacctgggtg cgtgagagag agaggtacca 1740 cgctgaggaa cgtcgtaagt ccggccagct tagctgggca gatcgctttg gtgacgatag 1800 tggcgaggat gttgatatcg agacatcaca tcccgtagca ccatcaatat ctaaggcgcg 1860 gcggaaacgg tctaagcgcg ttgagcagtt cgtcgacgcg gtttctgaat gttccttctc 1920 gtttgagtca gctcacgagg ggatcgtacc agagacctca gcttatgacc acgttccttt 1980 aaactgccag ggggcgggct cgagccttcg ggcgagtccg cccttggacg gcttattcaa 2040 ctcggagaat accgctggga ctcccttggc gactccctcc cttccgacgg aatgcccttc 2100 agctacgttg gaaaatcggg tgtcgtcttt ggagaacatg ctgggaaaag tgtctgcgca 2160 gctgtcaaag acgcaatctc agtattccca gatcttgaag gatttggctg gcctgagagg 2220 ggaagtaaag cagagcttga ctccctcgtc ctccaagcca gccggttcaa cagaacggta 2280 tgtccctccg ggctcgcgca agcagtccaa tcactccaag aaaagtaccc aaaagtcccc 2340 cccaggcgat gcctcaggga cgagtggagg ttcgacgaca tcttcgacga agtcgaaaga 2400 atcctctgcg aaaccggcga agtgaattcc gcttcctcgc cgggggtacc gcttgcgggg 2460 cttgccaatt ccaacggtga ggtccgtggg ctagcgagag atttggtttg tttagctgtg 2520 gtggagcgat tgaatgcctt agcctcggtt gacccccgcc agcataactg gacacccagg 2580 gagctggtag agaaaggtct ttgtgaccct gtgcgcttgt tcgtcaagaa tgagccacac 2640 ccacggaaga aattgcttga acgtcgattc aggctgatct cttccgtttc tctagttgac 2700 cagctggtgg agcggatgct tttcgggcca cagaacaaca ctgagatttc aacttggtgg 2760 cagtggccct cgaagccggg catgggtctg ttgacccctg aacaaatccg tttggtgtgg 2820 gacgatgtgt tccaaaagca ccaggcccac cctgcggctg aggcagacat atcggggttt 2880 gattggtccg ttcaggactg ggagttgtgg tcagacctcg cgatccgaat aaacaggggg 2940 aattttcagg gaaacctcag gagggcggct atcagccgct actactgttt tatgaactct 3000 gttttccaac tctcagatgg aaccctgatt cagcaggaat tgcccgggtt gatgaagtcc 3060 ggctcttact gcacctcatc cactaactcg cgcatacgct gcctaatggc tgagctcatc 3120 ggctcgccat ggtgtatagc tatgggcgac gattcggttg agggatggat tgagggagcc 3180 caatccaagt acgccgcgct gggtcacacc tgcaaggagt actacccatg caagaccaga 3240 gggcgagagc tcctggaatt caacttctgt tcacatctga tcaggagggg tcatgctgag 3300 ctcacttcat ggccgaaggc gttgtttcgc tttctgtcga gcaagcatga ggattttgaa 3360 gatctgtggg ttgagcttca cacgtgcggg gtgtggggcc ggattgaacg atatctgcgt 3420 gggatagggc gagtctccca caaagatggc caggaagggc aagaaaatca actccaacca 3480 ggggcagcaa gggaagaaga agagccgacg cccacgtggg cgttcggcgg aaccccagct 3540 tcaacgggct ccagtggctc aggcctcccg gatatctggg acggttcctg gtccactatc 3600 ttctaacacc tggccgctcc actccgtgga attcctagcg gattttaagc ggagtgccac 3660 ctcagcagat gcgacgacat acaactgtgt gccgtttaat ctgccccgag tgtggagtct 3720 tgcgcgttgt tactccatgt ggaagccaac acggtgggac gtcgtttacc tccctgaggt 3780 gagcgcggcg gcagctggaa gtatcgagat gtgttatctc tacgactacg ctgacaccat 3840 cccaagtgac acgggcaaga tgagcaggac ggcgggcttc gtcacctcca gcgtttggta 3900 cggcgcggag ggctgccact tactgagtgg cggctcagca cggaatgccg tggtcgcctc 3960 gatggactgt tcccgagtcg gctggaaacg cgttactagt tctatcccta gtggcgcgga 4020 tcccaacgtc gtaaacacca tactgccagc taggctagct gtgcggtcgt cgattaaacc 4080 gacggctgat gatacgccgg ggaaactcta cgctatcgtc agtatggtcc tgcgggatcc 4140 ggttgatcca acactcaata cgtgaaccgg gtttcagtag agataggtat tggcaccagt 4200 gatgatccac ggatagctca gagatcgact accctgaaaa ggatgttgag cgttcctgaa 4260 acgcgggctt gatcctacga gatgatactg gtgactatcc tacgtgagga gttgcactca 4320 cgctttcaac ccaaagcaac ccatgcactg gatagtgctt acccagatgg ttttcggagc 4380 tactgggcgg acttttcaca aaccgaattc tccattcatt ccgagagaat tctcgggatg 4440 ggtgggggag 4450 //