ID AJ608208; SV 1; linear; genomic RNA; STD; VRL; 4451 BP. XX AC AJ608208; XX DT 17-MAR-2004 (Rel. 79, Created) DT 17-MAR-2004 (Rel. 79, Last updated, Version 1) XX DE Rice yellow mottle virus complete genome, isolate Ma10 XX KW coat protein; complete genome; ORF1; ORF2a; ORF2b; ORF4; P1; protease; KW RNA-dependent RNA polymerase; VPg. XX OS Rice yellow mottle virus OC Viruses; Riboviria; Solemoviridae; Sobemovirus. XX RN [1] RP 1-4451 RA Fargette D.; RT ; RL Submitted (18-NOV-2003) to the INSDC. RL Fargette D., Dgpc, Ird, BP 64501, 34394 Montpellier cedex 5, FRANCE. XX RN [2] RX DOI; 10.1128/JVI.78.7.3252-3261.2004. RX PUBMED; 15016846. RA Fargette D., Pinel A., Abubakar Z., Traore O., Brugidou C., Fatogoma S., RA Hebrard E., Choisy M., Sere Y., Fauquet C., Konate G.; RT "Inferring the evolutionary history of rice yellow mottle virus from RT genomic, phylogenetic, and phylogeographic studies"; RL J. Virol. 78(7):3252-3261(2004). XX DR MD5; 75444ca21b5a52280d458f51ece681cc. DR EuropePMC; PMC1061534; 15767440. DR EuropePMC; PMC371063; 15016846. DR EuropePMC; PMC3791421; 23830075. DR RFAM; RF01838; sobemo_FSE. XX FH Key Location/Qualifiers FH FT source 1..4451 FT /organism="Rice yellow mottle virus" FT /isolate="Ma10" FT /mol_type="genomic RNA" FT /country="Mali" FT /db_xref="taxon:31744" FT CDS 81..554 FT /product="P1" FT /function="possible roles in suppression of FT post-transcriptional gene silencing and viral movement" FT /note="ORF1" FT /db_xref="InterPro:IPR021971" FT /db_xref="UniProtKB/TrEMBL:Q709K8" FT /protein_id="CAE81299.1" FT /translation="MTRLEVLIRPTQQTVAKAIAAGYTHALTWVWHSQTWDVDAVNDPV FT LSADFNPEKVGWVSVSFACTQCTAHYYTSEQVKYFTNIPPVHYDVLCADCERSVQQDDE FT IDREHDERNAEISACNARALSEGRPASLVYLSRDACDIPEHSGTCRFDKYLNF" FT CDS 608..2425 FT /product="protease and VPg" FT /note="ORF2a" FT /db_xref="GOA:Q709K7" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:Q709K7" FT /protein_id="CAE81300.1" FT /translation="MGSSVVGRFLTRTKETTRVDSNLLIVLAGLIAAAIVSEHLPVTAS FT LWAIPSAIIANWIVLSAHESFSRFVEGVEIEPMSTLRYGKVQSAPRFDPSRGYVVDVSY FT DGHVIPVILDFTTTTALSVPQRVNPGVSMEASRGGLPPTSVKLEDVPPSVVVLYHDSVR FT LGLGTRVRTPTGRDLLMTNHHIAALEPNGIAYKGHLKRVTLDAPVIACDHPHIDCAFYE FT VPPKIWSLLGVKSASLKPLVKQTAVSLFGGSSSTDFSSCVGIAQIGDNPFLIRHQSTTC FT SGWSGSPLYHKGCVVGLHIGAADGYNVASNVAWYFHTFKKEVVVESPFEIYGKFREANS FT EEYDESLRHGVQYAEYDFSGDTIRASSNTWVRERERYHAEERRKSGQLSWADRFGDDSG FT EDVDIETSHPVAPSISKARRKRSKRVEQFVDAVSECSFSFESAHEGIVPETSAYDHVPL FT NCQGAGSSLRASPPLDGLFNSESTAGTPLETPSLPTECPSATLENRVLSLENMLGKVSA FT QLSKTQSQYSQILKDLAGLRGEVKQSLTPSSSKPVGSTERYVPPGSRKQSNHSKKGTQK FT SPPGDASGTSGGSTTSSMKSKESSAKPAK" FT CDS <2092..3606 FT /product="RNA-dependent RNA polymerase" FT /note="ORF2b" FT /note="ORF2b produced by a -1 frameshift in ORF2a, FT translation occurs as an ORF2a-ORF2b fusion protein" FT /db_xref="GOA:Q709K6" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:Q709K6" FT /protein_id="CAE81301.1" FT /translation="MPFSYVGKSGVVFGEHAGKSVCAAVKDAIPVFPDLEGFGWPERGS FT KAELDSLILQAGRFNRTVCPSGLAQAVQSLQERYPKVPPRRCLRDEWRFDDIFDEVERI FT LCETGEVNSASSPGVPLAGLANSNGEVRGLARDLVCLAVVERLNALASVDPRQHNWTPR FT ELVEKGLCDPVRLFVKNEPHPRKKLLERRFRLISSVSLVDQLVERMLFGPQNNTEISTW FT WQWPSKPGMGLLTPEQIRLVWDDVFQKHQAHPAAEADISGFDWSVQDWELWSDLAIRIN FT RGNFRGNLRRAAISRYYCFMNSVFQLSDGTLIQQELPGLMKSGSYCTSSTNSRIRCLMA FT ELIGSPWCIAMGDDSVEGWIEGAQSKYAALGHTCKEYYPCKTRGRELLEFNFCSHLIRR FT GHAELTSWPKALFRFLSSKHEDFEDLWVELHTCGVWGRIERYLRGIGRVSHKDGQEGQE FT NQLQSGAARKEEESTSSWAFGGAPASTGSNGSGLPDIWDGSWSTIF" FT CDS 3446..4165 FT /product="coat protein" FT /note="ORF4" FT /db_xref="GOA:Q709K5" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q709K5" FT /protein_id="CAE81302.1" FT /translation="MARKGKKTNSNQGQQGKKKSRRPRGRSAEPQLQRAPMAQASRISG FT TVPGPLSSNTWPLHSVEFLADFKRSSTSADATTYDCVPFNLPRVWSLARCYSMWKPTRW FT DVVYLPEVSATVSGSIEMCFLYDYADTIPSDTGKMSRTAGFVTSSVWYGAEGCHLLSGG FT SARNAVVASMDCSRVGWKRVTSSIPSSVDPNVVNTILPARLAVRSSIKPTVSDTPGKLY FT VIASMVLRDPVDPTLNT" XX SQ Sequence 4451 BP; 976 A; 1162 C; 1277 G; 1036 T; 0 other; acaattgaag ctaggaaagg agcatattgc gaaagcgatc cctccttccg acgaacaatt 60 gtagccacgc tgcatcgtgt atgacacggt tggaagttct tatacgaccg actcagcaga 120 ctgtggcaaa agccatcgcc gcgggctata cgcacgcact cacctgggtt tggcattctc 180 agacctggga cgttgacgca gtgaacgacc ccgttctcag cgctgacttc aaccccgaga 240 aggttggttg ggtgtctgtg tcgtttgcct gtactcagtg tacggctcac tactacacaa 300 gtgagcaggt gaaatacttt accaatattc cgcctgtcca ctacgacgtg ctgtgtgccg 360 attgtgagcg cagtgttcag caggacgacg agatcgaccg tgaacacgac gagcgtaacg 420 cagagatctc tgcctgcaac gctcgggctc tgagtgaagg gagaccagca agtttggttt 480 acctctctcg ggacgcttgc gacatacctg agcactccgg aacgtgccgg tttgacaagt 540 acctcaattt ctgagggatc agtcctgccg acatctaagg agcggtcttg gttcagacta 600 acgcgggatg ggctcttctg ttgttggtcg ctttctcact cgcaccaagg aaacgacgag 660 ggtggactcc aacctcctca tcgtcttggc tgggttgata gcggccgcga tagtgtcaga 720 gcacctgccc gtgacggcgt cattgtgggc aatcccctca gctatcatag caaactggat 780 cgtgctgtca gctcacgaga gcttcagccg gttcgttgag ggggttgaga ttgagcccat 840 gtccacacta cggtatggca aggttcagtc tgcccctagg tttgatccct cccggggtta 900 tgtggttgac gtgtcatacg acggccacgt gattccagtg atattagact tcaccacgac 960 aacagctctg tcggttcccc aaagagtaaa tcctggggtc tcgatggagg caagtcgcgg 1020 ggggctccca ccgacgtccg tcaaactcga agatgtgccg ccgagcgttg tggttttata 1080 ccacgactcc gtcaggctag gcctgggtac tagagtgcga actcccacgg gtcgtgatct 1140 cctcatgacc aatcaccata tcgctgcttt ggaacccaat ggtatcgcgt acaagggcca 1200 cctcaaaagg gtgactctag acgcgccagt catcgcatgt gaccatccac acatagactg 1260 cgcgttctac gaggtgcctc ccaagatctg gtctctcttg ggggtcaagt ctgccagcct 1320 gaaacctctg gttaaacaga ctgcggtgtc actcttcggt ggctcgtcat ctactgactt 1380 ctcaagttgt gttgggatag cccagattgg ggacaacccg ttcctgataa ggcatcaaag 1440 tacgacttgc agtgggtggt cgggctcccc gctctaccac aagggttgcg tggttggtct 1500 acatataggt gctgcggatg gttataatgt ggcatcgaat gtggcctggt actttcatac 1560 cttcaagaag gaagtggttg tagagtctcc gtttgagatc tacggcaaat tccgtgaagc 1620 gaattccgag gagtacgacg aaagtctacg ccacggggtc cagtatgcag agtatgactt 1680 ctctggtgat accatccggg cgtcctcaaa cacctgggtg cgcgagagag agaggtacca 1740 cgctgaggaa cgtcgtaagt ccggccagct tagctgggca gatcgctttg gtgacgatag 1800 tggcgaggat gttgatatcg agacatcaca tcccgtagca ccatcaatat ctaaggcgcg 1860 gcggaaacgg tctaagcgcg ttgagcagtt cgtcgacgcg gtttctgagt gctccttttc 1920 gtttgagtca gctcacgagg ggattgtgcc ggagacctcg gcttatgacc acgttccttt 1980 aaactgccag ggggcgggct cgagccttcg ggcgagtccg cccttggacg gcttattcaa 2040 ctcggagagt accgctggga ctcccttgga gactccctcc cttccgacgg aatgcccttc 2100 agctacgttg gaaaatcggg tgttgtcttt ggagaacatg ctgggaaaag tgtctgcgca 2160 gctgtcaaag acgcaatccc agtattccca gatcttgaag gatttggctg gcctgagagg 2220 ggaagtaaag cagagcttga ctccctcatc ctccaagccg gtcggttcaa cagaacggta 2280 tgtccctccg ggctcgcgca agcagtccaa tcactccaag aaaggtaccc aaaagtcccc 2340 cccaggcgat gcctcaggga cgagtggagg ttcgacgaca tcttcgatga agtcgaaaga 2400 atcctctgcg aaaccggcga agtgaattcc gcttcctcgc cgggggtgcc gctcgcgggg 2460 cttgccaatt ctaacggtga ggtccgtggg ttagcgagag atttggtttg tttagctgtg 2520 gtagagcgat tgaatgcctt agcctcggtt gacccccgcc agcataactg gacacccagg 2580 gagctggtag agaaaggtct ttgtgaccct gtgcgcttgt tcgtcaagaa tgagccacac 2640 ccacggaaga aattgcttga acgtcgattc aggctgatct cctccgtttc tctagttgac 2700 cagctggtgg agcggatgct tttcgggcct cagaacaaca ccgagatctc aacttggtgg 2760 cagtggcctt cgaagccggg catgggtctt ttgactcctg aacaaatccg cttggtgtgg 2820 gacgatgtgt tccagaagca ccaggcccac cctgcggctg aggcagacat atcggggttt 2880 gactggtccg ttcaggactg ggagttgtgg tcagacctcg cgatccgtat aaacagaggg 2940 aattttcggg gaaacctcag gagagcggct attagtcgct actactgttt tatgaactct 3000 gttttccagc tctcagatgg aaccctcatc cagcaagagt tgcccggatt gatgaaatcc 3060 ggctcttatt gcacctcatc caccaattcg cgcatacgct gcctaatggc tgagcttatc 3120 ggctcgccgt ggtgcattgc aatgggcgat gattcagtgg aggggtggat tgagggggcc 3180 cagtccaagt acgccgcgct agggcatacc tgcaaggagt actacccatg taagaccaga 3240 gggcgcgagc tcctggaatt caacttctgt tcacatttga tcaggagggg acatgctgag 3300 ctcacttcgt ggccgaaggc actctttcgc tttctgtcga gcaagcatga ggactttgaa 3360 gatctgtggg ttgagcttca cacgtgcggg gtgtggggca ggatcgaacg atatctgcgt 3420 gggataggga gagtctccca caaagatggc caggaagggc aagaaaacca actccaatca 3480 ggggcagcaa ggaaagaaga agagtcgacg tcctcgtggg cgttcggcgg agccccagct 3540 tcaacgggct ccaatggctc aggcctcccg gatatctggg acggttcctg gtccactatc 3600 ttctaacacc tggccgctcc actccgtgga attccttgcg gattttaagc ggagttccac 3660 atctgcggat gcgacgacat acgattgtgt gccgttcaat ttacctcggg tgtggagtct 3720 tgcacgttgt tactccatgt ggaagccaac acggtgggat gtcgtttacc tccctgaggt 3780 gagcgcaact gtctctggaa gtatcgagat gtgttttctc tacgactatg cagacaccat 3840 cccaagtgac acgggcaaga tgagcaggac ggcgggcttc gtcacctcta gcgtttggta 3900 cggcgcggag ggctgccact tattaagtgg tggctcagca cgaaatgccg tggtcgcctc 3960 gatggattgt tcccgagtcg gctggaaacg cgttactagt tccataccta gtagcgtgga 4020 tcccaacgtc gtaaacacca tactgccggc taggctagct gtgcgatcgt cgatcaaacc 4080 gacggttagt gatacgccgg gaaaactcta cgttatcgct agtatggtcc tgcgggatcc 4140 ggttgatcca acactcaata cgtgagccgg atctcagtag agataggtat tggcaccagt 4200 gatgatccac ggactggctc agagaacgac taccctgaaa aggacgttgt gcgtttccga 4260 acgcgggcct aatcctacga gatgatactg gtgactatcc tacgtgagga gttgcactca 4320 cgctttcaac ccaaagcaac ccatgcactg gatagtgctt acccagatgg ttttcggagc 4380 tactgggcgg acttttcacc aaaccgaatt ccccactctt tccgagagaa ttctcgggat 4440 gggtggggga g 4451 //