ID AJ608207; SV 1; linear; genomic RNA; STD; VRL; 4450 BP. XX AC AJ608207; XX DT 17-MAR-2004 (Rel. 79, Created) DT 17-MAR-2004 (Rel. 79, Last updated, Version 1) XX DE Rice yellow mottle virus complete genome, isolate CI63 XX KW P1; VPg; ORF1; ORF4; ORF2a; ORF2b; protease; coat protein; complete genome; KW RNA-dependent RNA polymerase. XX OS Rice yellow mottle virus OC Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; OC Sobelivirales; Solemoviridae; Sobemovirus. XX RN [1] RP 1-4450 RA Fargette D.; RT ; RL Submitted (18-NOV-2003) to the INSDC. RL Fargette D., Dgpc, Ird, BP 64501, 34394 Montpellier cedex 5, FRANCE. XX RN [2] RX DOI; 10.1128/JVI.78.7.3252-3261.2004. RX PUBMED; 15016846. RA Fargette D., Pinel A., Abubakar Z., Traore O., Brugidou C., Fatogoma S., RA Hebrard E., Choisy M., Sere Y., Fauquet C., Konate G.; RT "Inferring the evolutionary history of rice yellow mottle virus from RT genomic, phylogenetic, and phylogeographic studies"; RL J. Virol. 78(7):3252-3261(2004). XX DR MD5; 650ff97428a749884ec1c557b7fc3ce6. DR EuropePMC; PMC1061534; 15767440. DR EuropePMC; PMC371063; 15016846. DR EuropePMC; PMC3791421; 23830075. DR RFAM; RF01838; sobemo_FSE. XX FH Key Location/Qualifiers FH FT source 1..4450 FT /organism="Rice yellow mottle virus" FT /isolate="CI63" FT /mol_type="genomic RNA" FT /country="Cote d'Ivoire" FT /db_xref="taxon:31744" FT CDS 81..554 FT /product="P1" FT /function="possible roles in suppression of FT post-transcriptional gene silencing and viral movement" FT /note="ORF1" FT /db_xref="InterPro:IPR021971" FT /db_xref="UniProtKB/TrEMBL:Q709L2" FT /protein_id="CAE81295.1" FT /translation="MTRLEVLIRPTQQTVAKAITAGYTHALTWVWHSQTWDVDAVNDPV FT LSADFNPTKVGWVSVSFACTRCTAHYYTSEQVKCFVNIPPVHYDVVCADCERSVQQDDQ FT IDREHNERNAEISACNARALSEGRPASLVYLSRDACDIPEHSGTCRFDKYLNF" FT CDS 608..2425 FT /product="protease and VPg" FT /note="ORF2a" FT /db_xref="GOA:Q709L1" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:Q709L1" FT /protein_id="CAE81296.1" FT /translation="MGFSVVGRFLTRTKETTRVDSNLLIVLAGLIAAAIVSERLPVTAS FT LWAIPSAIIANWIVLSAHESFSRFVEGVEIEPMSTLRYGKVQSAPRFDPSRGYVVDVSY FT NGHVIPVILDFTTTTALSVPQRVNPGVSMEASRGGLPPTSVKLEDVPPSVVVLYHDSVR FT LGLGTRVRTPTGRDLLMTNHHIAALEPNGIAYKGHLKKVTLDAPVIACDHPHIDCAFYE FT VPPKIWSLLGVKSASLKPLVKQTAVSLFGGSSSTDFSSCVGIAQIGDNPFLIRHQSTTC FT SGWSGSPLYHKGCVVGLHIGAADGYNVASNVAWYFHTFKKEVVVESPFEIYGKFREANS FT EEYDESLRHGVEYAEYDFSGDTIRASSNTWVRERTKYHAEERRKSGQLSWAERFGDDSG FT EDVDIETSHPVAPSISKARRKRSKRVEQFVDAVSECSFSFESAHEGVVPETSAYDHVPL FT NCQGAGSSLRASPPLDGLFNSESTAGTPLATPSLPTGCPSATLEDRVSSLENMLGRVSA FT QLSKTQSQYSQILKDLAGLRGEVKQSLTPSSSKPAGSTERYVPPGSRKQSNHSKKSTQK FT SPPGDASGTSGGSTTSSMKSKESSAKPAK" FT CDS <2092..3606 FT /product="RNA-dependent RNA polymerase" FT /note="ORF2b" FT /note="ORF2b produced by a -1 frameshift in ORF2a, FT translation occurs as an ORF2a-ORF2b fusion protein" FT /db_xref="GOA:Q709L0" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:Q709L0" FT /protein_id="CAE81297.1" FT /translation="MPFSYVGGSGVVFGEHAGKSVCAAVKDAISVFPDLEGFGWPERGS FT KAELDSLILQAGRFNRTVCPSGLAQAVQSLQEKYPKVPPRRCLRDEWRFDDIFDEVERI FT LCETGEVNSASSPGVPLAGLANSNGEVRGLARDLVCLAVVERLNALASVDPRQHNWTPR FT ELVEKGLCDPVRLFVKNEPHPRKKLLERRFRLISSVSLVDQLVERMLFGPQNNTEISTW FT WQWPSKPGMGLLTPEQIRLVWDDVFQKHQAHPAAEADISGFDWSVQDWELWSDLAIRIN FT RGNFQGNLRRAAISRYYCFMNSVFQLSDGTLIQQELPGLMKSGSYCTSSTNSRIRCLMA FT ELIGSPWCIAMGDDSVEGWIEGAQSKYAALGHTCKEYYPCKTRGRELLEFNFCSHLIRR FT GHAELTSWPKALFRFLSSKHEDFEDLWVELHTCGVWSRIERYLRGIGRVSHKDGQEGQE FT NQLQPGAARKEEEPASTWAFGGAPASTGSSGSGLPDIWDGSWSTIF" FT CDS 3446..4165 FT /product="coat protein" FT /note="ORF4" FT /db_xref="GOA:Q9DGX1" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q9DGX1" FT /protein_id="CAE81298.1" FT /translation="MARKGKKINSNQGQQGKKKSRRPRGRSAEPQLQRAPVAQASRISG FT TVPGPLSSNTWPLHSVEFLADFKRSATSADATTYDCVPFNLPRVWSLARCYSMWKPTRW FT DVVYLPEVSAAAAGSIEMCFLYDYADTIPSDTGKMSRTAGFVTSSVWYGAEGCHLLSGG FT SARNAVVASMDCSRVGWKRVTSSIPSKTDPNVVNTILPARLAVRSSIKPTVDDTPGKLY FT AIVSMVLRDPVDPTLNT" XX SQ Sequence 4450 BP; 984 A; 1175 C; 1270 G; 1021 T; 0 other; acaattgaag ctaggaaagg agcatattgc gaaagcgatc cctccttccg ccgaacaatt 60 gtagccacgc tgcatcgtgc atgacacggt tggaagttct tatacgaccg actcagcaga 120 ctgtggcaaa agccattacc gcgggctata cgcacgcact cacctgggtt tggcattctc 180 agacctggga cgttgacgca gtgaacgatc cggttctcag cgccgacttc aaccccacaa 240 aggttggttg ggtgtcagtg tcgtttgcct gtactcggtg cacggctcac tactacacga 300 gtgagcaggt gaagtgtttc gtaaacatcc cacctgtcca ctacgacgtg gtgtgtgctg 360 attgcgagcg cagtgttcag caggacgacc agatcgaccg cgagcacaac gagcgtaacg 420 cagagatctc tgcctgcaac gctcgggccc tgagcgaggg tagaccagca agtttggttt 480 atctttcacg ggacgcttgt gacatacccg agcactccgg aacgtgccgg tttgacaaat 540 acctcaactt ttgaggaatc agtcctgccg acatccaagg agcggtcttg gttcagacta 600 acacgggatg ggcttttctg ttgttggtcg ctttctcact cgcaccaagg aaacgacgag 660 ggtggactcc aacctcctca tcgtcttggc tgggttgata gcggccgcga tagtctcaga 720 gcgcctgccc gtgacggcgt cattgtgggc aatcccctca gctatcatag caaactggat 780 cgtgctgtca gctcacgaga gcttcagccg gttcgttgag ggggttgaga ttgagcccat 840 gtccacactt cggtatggca aggttcagtc tgcccctaga ttcgatccct cccggggtta 900 cgtggttgac gtatcttaca acggccatgt gattccggtg atattggatt tcaccacgac 960 aacagctctg tcggttcccc aaagagtaaa tcctggggtc tcgatggagg caagtcgcgg 1020 ggggctcccg ccgacgtccg tcaaactcga agatgtgccg ccgagcgttg tggtcttgta 1080 ccacgactcc gtcaggctag gcctgggaac tagggtgcga actcccacag gtcgtgatct 1140 cctcatgacc aatcaccata tcgctgccct agaacccaat ggcatcgcgt acaagggtca 1200 ccttaagaaa gtgactctag atgcgccagt catcgcatgt gaccatccac acatagactg 1260 cgcattctac gaggtgcctc ccaagatttg gtctctcttg ggggttaagt ctgccagtct 1320 gaaacctctg gttaaacaga ctgcggtgtc actcttcgga ggctcgtcat ctactgactt 1380 ctcaagttgt gttgggatcg cccagattgg ggacaatccg ttcctgataa ggcatcaaag 1440 tacgacttgc agtgggtggt cgggctcccc gctctaccac aaaggttgcg tggttggtct 1500 acatataggt gctgcggatg gttataatgt ggcatctaat gtagcctggt actttcatac 1560 cttcaagaag gaagtagttg ttgagtctcc atttgagatc tacggcaaat tccgtgaagc 1620 aaactccgag gagtacgacg aaagtctacg acatggagtt gagtatgcag agtacgactt 1680 ctctggtgat accatccggg catcttcaaa tacctgggtg cgtgagagga cgaagtacca 1740 cgctgaggaa cgtcgtaagt ccggccagct tagctgggca gaacgctttg gtgacgacag 1800 tggcgaggat gttgatatcg agacatcgca tcccgtagca ccgtcaatat ctaaggcgcg 1860 gcggaaacgg tcaaagcgcg ttgagcagtt cgtcgacgcg gtttcagagt gctccttctc 1920 gtttgagtca gctcacgagg gggttgtgcc agagacctca gcttatgacc acgttccttt 1980 aaactgccag ggggcgggct cgagccttcg ggcgagtccg cccttggacg gcttattcaa 2040 ctcggagagt accgctggga ctcccttggc gactccctcc cttccgacgg gatgcccttc 2100 agctacgttg gaggatcggg tgtcgtcttt ggagaacatg ctgggaagag tgtctgcgca 2160 gctgtcaaag acgcaatctc agtattccca gatcttgaag gatttggctg gcctgagagg 2220 ggaagtaaag cagagcttga ctccctcatc ctccaagccg gccggttcaa cagaacggta 2280 tgtccctccg ggctcgcgca agcagtccaa tcactccaag aaaagtaccc aaaagtcccc 2340 cccaggcgat gcctcaggga cgagtggagg ttcgacgaca tcttcgatga agtcgaaaga 2400 atcctctgcg aaaccggcga agtgaattcc gcttcctcgc cgggggtgcc gcttgcgggc 2460 cttgccaatt ccaacggtga ggtccgtggg ctagcgagag atttggtatg tttagctgtg 2520 gtagagcgct tgaatgcctt agcctcggtt gacccccgcc agcacaactg gacacccagg 2580 gagctggtag agaaaggtct ttgtgacccc gtgcgcttgt tcgttaagaa tgagccacac 2640 ccacggaaga aattgcttga acgtcgattc aggctgatct cttctgtttc tctagtcgac 2700 cagctggtgg agcggatgct tttcgggcca cagaacaaca ctgagatttc aacttggtgg 2760 cagtggcctt cgaagccggg catgggtctt ttgacccctg aacaaatccg tttggtgtgg 2820 gacgacgtgt tccaaaagca ccaggcccac cctgcggctg aggcagacat atcggggttt 2880 gactggtccg ttcaggactg ggagttgtgg tcagacctcg cgatccgaat aaacaggggg 2940 aatttccagg gaaacctcag gagggcggct atcagccgct actactgttt tatgaactct 3000 gttttccaac tctcagatgg aaccctcatc cagcaggaac tgcccgggtt gatgaaatcc 3060 ggctcttact gcacttcatc cactaactcg cgcatacgct gtctaatggc tgagctcatc 3120 ggctcgccat ggtgcatagc tatgggcgac gactcggttg aaggatggat tgagggggcc 3180 cagtccaagt acgccgcgtt gggtcacacc tgcaaggagt actacccatg taagaccaga 3240 gggcgcgagc tcctggaatt caacttctgt tcacacttga tcaggagggg tcatgctgag 3300 ctcacttcat ggccgaaggc gttgtttcgc tttctgtcga gcaagcatga ggactttgaa 3360 gatctgtggg ttgagcttca cacgtgcggg gtgtggagcc ggattgaacg atatctgcgt 3420 gggatagggc gagtctccca caaagatggc caggaagggc aagaaaatca actccaacca 3480 ggggcagcaa ggaaagaaga agagccggcg tccacgtggg cgttcggcgg agccccagct 3540 tcaacgggct ccagtggctc aggcctcccg gatatctggg acggttcctg gtccactatc 3600 ttctaacacc tggccgctcc actccgtgga attcctagcg gattttaagc ggagtgccac 3660 ctcagcagac gcgacgacat acgattgtgt gccgttcaat ctgcctcgag tgtggagtct 3720 tgcgcgttgt tactccatgt ggaagccaac acggtgggat gtcgtttacc tccctgaggt 3780 gagcgcggcg gcagctggaa gtatcgagat gtgctttctc tacgactatg ctgacaccat 3840 cccaagtgac acgggcaaga tgagcaggac ggcgggcttc gtcacctcca gcgtttggta 3900 cggcgcggag ggctgccact tactgagtgg cggctcagca cgaaatgccg tggtcgcctc 3960 gatggattgt tcccgagtcg gctggaaacg tgttactagt tctattccta gtaaaacgga 4020 tcccaacgtc gtaaacacca tactgccagc taggctagct gtgcggtcgt cgatcaaacc 4080 gacggttgat gatacgccgg ggaaactcta cgctatcgtc agtatggtcc tgcgggatcc 4140 ggttgatcca acactcaata cgtgaaccgg atttcagtag agataggtat tggcaccagt 4200 gataatccac ggatcggctc agagatcgac taccctgaaa aggatgttga gcgtttctga 4260 acgcgagctc gatcctacga gatgatactg gtgactatcc tacgttagga gttgcactca 4320 cgccttcaac ccaaagcaac ccatgcactg gatagtgctt acccagatgg ttttcggagc 4380 tactgggcgg acttttcacc aaccgaattc tccattcatt ccgagagaat tctcgggatg 4440 ggtgggggag 4450 //