ID AJ608206; SV 1; linear; genomic RNA; STD; VRL; 4449 BP. XX AC AJ608206; XX DT 17-MAR-2004 (Rel. 79, Created) DT 17-MAR-2004 (Rel. 79, Last updated, Version 1) XX DE Rice yellow mottle virus complete genome, isolate CI4 XX KW coat protein; complete genome; ORF1; ORF2a; ORF2b; ORF4; P1; protease; KW RNA-dependent RNA polymerase; VPg. XX OS Rice yellow mottle virus OC Viruses; Riboviria; Solemoviridae; Sobemovirus. XX RN [1] RP 1-4449 RA Fargette D.; RT ; RL Submitted (18-NOV-2003) to the INSDC. RL Fargette D., Dgpc, Ird, BP 64501, 34394 Montpellier cedex 5, FRANCE. XX RN [2] RX DOI; 10.1128/JVI.78.7.3252-3261.2004. RX PUBMED; 15016846. RA Fargette D., Pinel A., Abubakar Z., Traore O., Brugidou C., Fatogoma S., RA Hebrard E., Choisy M., Sere Y., Fauquet C., Konate G.; RT "Inferring the evolutionary history of rice yellow mottle virus from RT genomic, phylogenetic, and phylogeographic studies"; RL J. Virol. 78(7):3252-3261(2004). XX DR MD5; 8cb9047b076c60da18b4b0d2951af81c. DR EuropePMC; PMC1061534; 15767440. DR EuropePMC; PMC371063; 15016846. DR EuropePMC; PMC3791421; 23830075. DR RFAM; RF01838; sobemo_FSE. XX FH Key Location/Qualifiers FH FT source 1..4449 FT /organism="Rice yellow mottle virus" FT /isolate="CI4" FT /mol_type="genomic RNA" FT /country="Cote d'Ivoire" FT /db_xref="taxon:31744" FT CDS 81..554 FT /product="P1" FT /function="possible roles in suppression of FT post-transcriptional gene silencing and viral movement" FT /note="ORF1" FT /db_xref="InterPro:IPR021971" FT /db_xref="UniProtKB/TrEMBL:Q709L6" FT /protein_id="CAE81291.1" FT /translation="MTRLEVLIRPTQQTVAKAIAVGYTHALTWVWHSQTWDVDAVSDPV FT LSADFNPEKVGWVSVSFACTRCTAHYYTSEQVKYFVNIPPVHYDVVCADCERSVQQDDE FT IDREHDERNAEISACNARALSEGRPASLVYLSRDACDIPEHSGTCRFDKYLNF" FT CDS 609..2426 FT /product="protease and VPg" FT /note="ORF2a" FT /db_xref="GOA:Q709L5" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:Q709L5" FT /protein_id="CAE81292.1" FT /translation="MGSSVVGRFLTRTKETTRVDSHLLIVLAGLIAAAIVSERLPVTAS FT LWAIPSAIIANWIVLSAHESFSRFVEGVEIEPMSTLRYGKVQSAPRFDPSRGYVVDVSY FT NGHVIPVILDFTTTTALSVPQRVNPGVSMEASRGGLPPTSVKLEDVPPSVVVLYHDSVR FT LGLGTRVRTPTGRDLLMTNHHIAALEPNGIAYKGHLKKVALDAPVIACDHPHIDCAFYE FT VPPKIWSLLGVKSASLKPLVKQTAVSLFGGSSSTDFSSCVGIAQIGDNPFLIRHQSTTC FT SGWSGSPLYHKGCVVGLHIGAADGYNVASNVAWYFHTFKKEVIVESPFEIYGKFREANS FT EEYDESLRHGVQYAEYDFSGDTIRASSNTWVRERERYHAEERRKSGQPSWADRFGDDSG FT EDVDIETSHPVAPSIPRTRRKRSKRVEQFVDAVSECSFSFESAREGIVPETSAYDHVPL FT NCQGAGSSLRASPPLDGLSNSENTAGTPSVIPSLPTECPSATLENRVSSLENMLGKVSA FT QLSKTQSQYSQILKDLAGLRGEVKQSLTPSSSKPAGSTERYVPPGSRKQSNHSKKGTQK FT SPPGDASGTSGGSTTSSMKSKESSAKPAK" FT CDS <2093..3607 FT /product="RNA-dependent RNA polymerase" FT /note="ORF2b" FT /note="ORF2b produced by a -1 frameshift in ORF2a, FT translation occurs as an ORF2a-ORF2b fusion protein" FT /db_xref="GOA:Q709L4" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:Q709L4" FT /protein_id="CAE81293.1" FT /translation="MPFSYVGKSGVIFGEHAGKSVCAAVKDAISVFPDLEGFGWPERGS FT KAELDSLILQAGRFNRTVCPSGLAQAVQSLQERYPKVPPRRCLRDEWRFDDIFDEVERI FT LCETGEVNSASSPGVPLAGLANSNGEVRGLARDLVCLAVVERLNALASVDPRQHNWTPR FT ELVEKGLCDPVRLFVKNEPHPRRKLLERRFRLISSVSLVDQLVERMLFGPQNNTEISTW FT WQWPSKPGMGLLTPEQIRLVWDDVFQKHQAHPAAEADISGFDWSVQDWELWSDLAIRIN FT RGNFQGNLRRAAISRYYCFMNSVFQLSDGTLIQQELPGLMKSGSYCTSSTNSRIRCLMA FT ELIGSPWCIAMGDDSVEGWIEGAQSKYAALGHTCKEYYPCKTRGRELLEFNFCSHLIRR FT GHAELTSWPKACFRFLSSKHEDFEDLWVELHTCGVRSRIERYLRGIGRVSHKDGQEGQE FT NQLQPGAARKEEGPTPTWTVGGAPASTGSSGSGLPDIWDGSWSTIF" FT CDS 3447..4166 FT /product="coat protein" FT /note="ORF4" FT /db_xref="GOA:Q9DH71" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q9DH71" FT /protein_id="CAE81294.1" FT /translation="MARKGKKTNSNQGQQGKRKGRRPRGRSAEPQLQRAPVAQASRISG FT TVPGPLSSNTWPLHSVEFLADFKRSSTSADATTYDCVPFNLPRVWSLARCYSMWKPTRW FT DVVYLPEVSATVAGSIEMCFLYDYADTIPSDTGKMSRTAGFVTSSVWYGAEGCHLLSGG FT SARNAVVASMDCSRVGWKRVTSSIPSSVDPNVVNTILPARLAVRSSIKPTVSDTPGKLY FT VIASMVLRDPVDPTLNT" XX SQ Sequence 4449 BP; 975 A; 1168 C; 1284 G; 1022 T; 0 other; acaattgaag ctaggaaagg agcatattgc gaaagcgatc cctccttccg acgaacaatt 60 gtagccgcac tgcatcgtgt atgacacggt tggaagttct tatacgaccg actcagcaga 120 ctgtggcaaa agccatcgcc gtgggctata cgcacgcact cacctgggtt tggcattctc 180 agacctggga cgttgacgca gtgagcgatc cagttctcag cgccgacttc aaccctgaga 240 aggttggttg ggtgtcagtg tcgttcgcct gtactcggtg tacagcccac tactacacga 300 gtgagcaggt gaagtatttt gttaatattc cgcctgtcca ttacgacgtg gtgtgcgctg 360 attgcgagcg tagtgttcag caggacgacg agatcgaccg cgagcacgac gagcgtaacg 420 cagagatttc tgcctgcaac gctcgagccc taagtgaggg gagaccggca agtctggttt 480 acctctcgcg ggacgcttgc gatatacccg agcactccgg aacgtgccgg tttgacaaat 540 atctcaactt ctgagagaat cagtcctgcc gacatctaag gagcggtctt ggttcagact 600 aacgcgggat gggctcttct gttgttggtc gctttctcac tcgcaccaag gaaacgacga 660 gggtggactc ccacctcctc atcgtcttgg ctgggttgat agcggccgcg atagtctcag 720 agcgcctgcc cgtgacggcg tcattgtggg caatcccctc agctatcata gcaaactgga 780 tcgtgctgtc agctcacgag agcttcagcc ggttcgttga gggggttgag attgagccca 840 tgtccacact acggtatggc aaggttcagt ctgcccctag gttcgatccc tctcggggtt 900 atgtggttga tgtgtcctac aacggccacg tgattcctgt gatattggac ttcactacga 960 caacggctct gtcggttcct caaagagtaa atcctggggt ctcgatggag gcaagtcgtg 1020 gggggctccc gccgacatcc gtcaaactcg aagatgtgcc gccgagcgtt gtggttttgt 1080 accacgactc cgtcaggcta ggcctaggaa ctagggtgcg aactcccaca ggtcgtgatc 1140 tcctcatgac caatcaccac atcgctgcct tagaacctaa tggtatcgcg tataagggtc 1200 accttaagaa agtggcccta gacgcgccag tcatcgcatg tgaccatcca cacatagact 1260 gcgcgtttta cgaggtgcct cccaagatct ggtctctctt gggggtcaag tctgccagtt 1320 tgaaaccttt ggttaaacag actgcggtgt cactcttcgg aggctcgtca tctactgact 1380 tctcaagttg cgttgggatc gcccagattg gggacaatcc gttcctgata aggcatcaaa 1440 gcacgacttg cagtggatgg tcgggctccc cgctctacca caagggttgt gtggttgggt 1500 tacatatagg tgctgcggat ggttacaatg tggcatctaa tgtggcctgg tactttcata 1560 ccttcaagaa ggaagtgatc gttgagtctc cttttgagat ttacggtaaa ttccgtgaag 1620 caaactccga ggagtacgac gaaagtctac gacacggagt gcagtatgca gagtacgact 1680 tctctggtga taccatccgg gcgtcttcaa acacctgggt gcgtgagaga gagaggtacc 1740 acgctgagga acgtcgtaag tccggccagc ctagctgggc agatcgtttt ggtgacgaca 1800 gtggcgagga tgttgatatc gagacatcgc atcccgtagc accgtcaata cccaggacgc 1860 ggcggaaacg gtcaaagcgc gttgagcagt tcgtcgacgc agtttcagag tgctccttct 1920 cgtttgagtc agctcgcgag gggattgtgc cagagacttc agcttatgac cacgttcctt 1980 taaactgcca gggggcgggc tcgagccttc gggcgagtcc gcccttggac ggcttatcca 2040 actcggagaa taccgctggg actccctcgg tgattccctc ccttccgacg gaatgccctt 2100 cagctacgtt ggaaaatcgg gtgtcatctt tggagaacat gctgggaaaa gtgtctgcgc 2160 agctgtcaaa gacgcaatct cagtattccc agatcttgaa ggatttggct ggcctgagag 2220 gggaagtaaa gcagagcttg actccctcat cctccaagcc ggccggttca acagaacggt 2280 atgtccctcc gggctcgcgc aagcagtcca atcactccaa gaaaggtacc caaaagtccc 2340 ccccaggcga tgcctcaggg acgagtggag gttcgacgac atcttcgatg aagtcgaaag 2400 aatcctctgc gaaaccggcg aagtgaattc cgcttcctcg ccgggggtgc cgctcgcggg 2460 tcttgctaat tccaatggcg aggtccgggg gcttgcgaga gatttggtat gtttagctgt 2520 ggtggagcgc ttgaatgcct tagcctcggt tgacccccgc cagcataact ggacacccag 2580 ggagctggta gagaaaggtc tttgtgaccc cgtgcgcttg ttcgtgaaga acgagccaca 2640 cccacggagg aaattgcttg aacgtcgatt caggctgatc tcctccgttt ctctagttga 2700 ccagctggtg gagcggatgc ttttcgggcc gcagaacaac accgagattt ctacttggtg 2760 gcagtggcct tcgaagccgg gcatgggtct cctgacccct gaacaaatcc gtttggtgtg 2820 ggacgatgtg ttccagaagc accaggccca ccctgcggct gaggcagaca tatcggggtt 2880 tgactggtcc gtccaggact gggagttgtg gtcagacctc gcgattcgaa taaacagagg 2940 gaattttcag ggaaacctca ggagagcggc catcagccgc tactactgct ttatgaactc 3000 tgttttccaa ctctcagatg gaacccttat ccagcaggaa ttgcccgggt tgatgaaatc 3060 cggctcttac tgcacttcat ccactaactc acgcatacgc tgtctaatgg ctgagctcat 3120 cggctcgcca tggtgcatag ctatgggtga cgattccgtg gaggggtgga ttgagggggc 3180 ccaatccaag tacgccgcgc taggtcacac ctgcaaggag tactacccat gtaagaccag 3240 gggccgggaa ctcctggaat tcaacttctg ttcacacttg atcaggaggg gtcatgctga 3300 gctcacttcg tggccgaagg cgtgtttccg ctttctgtcg agcaagcatg aggattttga 3360 agatctgtgg gttgagcttc acacgtgcgg ggtgcggagc cggatcgaac gatatctgcg 3420 tgggataggg cgagtctccc acaaagatgg ccaggaaggg caagaaaacc aactccaacc 3480 aggggcagca aggaaagagg aagggccgac gcccacgtgg acggtcggcg gagccccagc 3540 ttcaacgggc tccagtggct caggcctccc ggatatctgg gacggttcct ggtccactat 3600 cttctaacac ctggccgctc cactccgttg agttcctagc ggactttaaa cggagttcca 3660 catcggcgga tgcgacgaca tatgattgtg tgccgttcaa tctgccgcgg gtgtggagtc 3720 ttgcgcgttg ttactccatg tggaagccaa cacggtggga tgtcgtttac ctccctgagg 3780 tgagcgccac ggtagctgga agtatcgaga tgtgttttct ctacgactat gctgatacca 3840 tcccaagtga cacgggcaag atgagcagga cggcgggctt cgtcacctct agcgtttggt 3900 acggcgcaga gggctgccac ttattaagtg gtggctcagc acgaaatgcc gtggtcgcct 3960 cgatggactg ttcccgagtc ggctggaaac gcgttactag ttccatacct agtagcgtgg 4020 atcccaacgt cgtaaacacc atactgccag ctaggctagc tgtgcgatcg tcgatcaaac 4080 cgacggttag tgatacgccg gggaaactct acgttattgc tagtatggtc ctgcgggatc 4140 cggttgatcc gacactcaat acgtgagccg gatccagtag agataggtat tggcaccagt 4200 gatgatccac ggattggctc agagatcgac taccctgaaa aggatgttga gcgttctcga 4260 acgcgggccc aatcctacga gatgatactg gtgactatcc tacgtgagga gttgcactca 4320 cgcctcaatc caaagcaacc catgcactgg acagtgctta cccagatggt tttcggagct 4380 actgggcgga ctcttcacaa accgaattcc ccattcattc cgagagaatt ctcgggatgg 4440 gtgggggag 4449 //