ID AJ607402; SV 1; linear; genomic RNA; STD; VRL; 4744 BP. XX AC AJ607402; XX DT 20-NOV-2003 (Rel. 77, Created) DT 28-JUL-2009 (Rel. 101, Last updated, Version 4) XX DE Pelargonium necrotic spot virus complete genome, genomic RNA XX KW coat protein; complete genome; cp gene; gene silencing suppressor; KW movement protein; p19 protein; p21 protein; p36 protein; p40 protein ; KW p95 protein; readthrough protein,; rep gene; replicase. XX OS Pelargonium necrotic spot virus OC Viruses; Riboviria; Tombusviridae; Procedovirinae; Tombusvirus. XX RN [1] RP 1-4744 RA Heinze C.; RT ; RL Submitted (17-NOV-2003) to the INSDC. RL Heinze C., Dept. Phytomedizin, Institut fuer Angewandte Botanik, RL Ohnhorststrasse 18, Hamburg 22609, Germany. XX RN [2] RX DOI; 10.1007/s00705-004-0319-6. RX PUBMED; 15290378. RA Heinze C., Wobbe V., Lesemann D.E., Zhang D.Y., Willingmann P., Adam G.; RT "Pelargonium necrotic spot virus: a new member of the genus Tombusvirus"; RL Arch. Virol. 149(8):1527-1539(2004). XX DR MD5; c0d891f8cf4f23020489011803fdbf1f. DR EuropePMC; PMC3234231; 22174683. DR RFAM; RF00171; Tombus_5. DR RFAM; RF00176; Tombus_3_IV. DR RFAM; RF00215; Tombus_3_III. DR RFAM; RF00510; Tombus_IRE. XX FH Key Location/Qualifiers FH FT source 1..4744 FT /organism="Pelargonium necrotic spot virus" FT /mol_type="genomic RNA" FT /db_xref="taxon:255587" FT CDS 77..2635 FT /transl_except=(pos:1067..1069,aa:OTHER) FT /gene="rep" FT /product="putative replicase, p95" FT /note="readthrough stop codon" FT /db_xref="GOA:Q709N2" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013707" FT /db_xref="UniProtKB/TrEMBL:Q709N2" FT /protein_id="CAE55156.1" FT /translation="MEGLKAESTTTVGINCNFQQTVMTETGDKLMFGSLPSVLNRPVAR FT RNYYRTLSNWVLTYTKTGKIEDTHDNAGSYVEDLVKTDFNAKYDWLAKRGVAREYRTAV FT GLAIIPSIPAIVANTRIVTGTCEVARVAVKLPKVLNILTRFTHVSVKVPYFYPRVDISA FT RGVLIGLAAAAALVPICAGIAYATLPREKLSVFRLKTEVRVHMEDEKEATDLLLVEPAR FT ELKGKDGEDLLTGSRLTKVIASTGRPRRRPYAAKIAQVARAKVGYLKNSPENRLIYQRV FT MIEIMDKDCVRYVDRDVILPLAIGCCFVYPEGVEESAALWGSQESLGVKXGGLVRLPGV FT VTQINRDIPSDVLLPQEVLEVRVGPPNAKNRNIFMVAGCPSQARFLVHNHCLKNLKRGL FT VERAFCVERNGKLARTPQPTKGAFGRLSPFRKAVCEKVGVAHRLGYDGFLSYYSGAKLR FT TYTRAVESLHITPVSERDSHLTTFVKAEKISTSKNDPAPRVIQPRNPRYNVELGRYLRH FT MESKLMKAVDGVFGETTCIKGYTADEVGAIFRAKWDRFDKPVAIGLDASRFDQHCSVEA FT LQYEHSFYRALYPGNKLLGKLLEWQLHNKGKGYVPDGTITYRKEGCRMSGDINTSLGNY FT LLMCAMIHGYMRHLGINEFSLANCGDDCVLILERRNLKQAQKTLPEYFLNLGYTMKVEQ FT PVFQLEAVEFCQAHPVQFQGGWKMVRNVRTAMSKDVHCVNNIRDLATRRAWSNAQHHGG FT LALSAGIPVVEKFYSRFTLYDVPKKHQRIDTVTNVHKWRGSGGSYVVTPESRASFWAAF FT GLTGDEQLALEDRLDRWEMDLFGEEGVDAHEPSILDSAVA" FT CDS 77..1069 FT /gene="rep" FT /product="putative replicase, p36" FT /db_xref="GOA:Q709N1" FT /db_xref="InterPro:IPR013707" FT /db_xref="UniProtKB/TrEMBL:Q709N1" FT /protein_id="CAE55157.1" FT /translation="MEGLKAESTTTVGINCNFQQTVMTETGDKLMFGSLPSVLNRPVAR FT RNYYRTLSNWVLTYTKTGKIEDTHDNAGSYVEDLVKTDFNAKYDWLAKRGVAREYRTAV FT GLAIIPSIPAIVANTRIVTGTCEVARVAVKLPKVLNILTRFTHVSVKVPYFYPRVDISA FT RGVLIGLAAAAALVPICAGIAYATLPREKLSVFRLKTEVRVHMEDEKEATDLLLVEPAR FT ELKGKDGEDLLTGSRLTKVIASTGRPRRRPYAAKIAQVARAKVGYLKNSPENRLIYQRV FT MIEIMDKDCVRYVDRDVILPLAIGCCFVYPEGVEESAALWGSQESLGVK" FT CDS 2650..3786 FT /gene="cp" FT /product="coat protein, p40" FT /db_xref="GOA:Q709N5" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q709N5" FT /protein_id="CAE55158.1" FT /translation="MALVRRNNNSNMVAVPAARATGAAIGSMMFSPTGAKLFWTGMDWV FT LDKTWQKIKNQFKSRKTDMILHPGAYPGAIAAPVAVTRVIRGSKPKFTRSKGAVTITHR FT ELVGQYNNSAGLVVNGSVGGTIYKLNPSNALLFPWLQSIASNFDQYKFDNVKLTYIPMC FT ATTETGRVALYFDKDSQDPVPADRMELANMFHLRETAPWAESNLNVPTDNVKRFTNDNT FT TTDLKLVDLGQIGIATFGGSGTNPVGDLFIHYTVTFFEPQPSAGIVETEQTGAGALDSG FT PDMVSVGGDAISTLIVFKTPGTFILTLDSVIPPWGLLVPTGVTVNSSTHAQATGFCQSI FT VNLTVSTPGGILQYNGTGFGNRTVNIVRAKVTNRVDII" FT CDS 3823..4392 FT /product="movement protein, p21" FT /db_xref="GOA:Q709N4" FT /db_xref="InterPro:IPR005332" FT /db_xref="UniProtKB/TrEMBL:Q709N4" FT /protein_id="CAE55159.1" FT /translation="MDTEYEQVNKPWNELYKEATLGNKLTVNVGMEDVEVPLLPSNFLT FT KVRVSMSGGYITVRRVRIKIIPLVSRKAGVSGKLYLRDISDTAGRKLHCTELLDLGKEI FT RLTMQHLDFSVSAKSDVPIVFGFEDLVSPYLEGRELFSVSLRWQFGLSAQCYSLPPAKW FT KVMYQEEALKALKPSKKKASKTDSSV" FT CDS 3855..4373 FT /product="p19" FT /function="putative gene silencing suppressor" FT /db_xref="GOA:Q709N3" FT /db_xref="InterPro:IPR004905" FT /db_xref="InterPro:IPR036131" FT /db_xref="UniProtKB/Swiss-Prot:Q709N3" FT /protein_id="CAE55160.1" FT /translation="MERAVQGGDAREQANSERWDGGCGGTITPFKLSDESPSLHEWRLH FT HSEEGEDQDHPLGFKESWSFGKVVFKRYLRYGGTETSLHRALGSWERNTVNNAASRFLG FT FGQIGCTYSIRFRGSCLTISGGSRTLQRLIEMAIRTKCTVLQLTPSEVEGNVSGGSPEG FT IEAFEKESE" XX SQ Sequence 4744 BP; 1243 A; 999 C; 1310 G; 1192 T; 0 other; agaaatacct caggacctga ccgtccggtg agttgcgctt atcccttgcg taaggtattt 60 ctctctcctt gttaatatgg agggtttgaa ggctgagtct accacaactg tggggataaa 120 ttgtaacttc cagcaaacag tgatgactga gaccggtgat aagttgatgt tcggaagttt 180 accttcagtt ttgaatcgac ctgttgcaag gaggaactat tatcgtacat tatcgaactg 240 ggttttgacg tacactaaga cagggaaaat agaggataca catgataatg ctgggagtta 300 tgtcgaggat ctcgtcaaga ctgacttcaa tgctaaatat gactggttgg ctaagcgtgg 360 tgtggctcgt gagtatcgca ctgccgtggg gttggccatc atacctagta tcccggcgat 420 tgtggcaaac acacgcattg ttactggtac atgtgaggta gcgagggttg ctgtaaagct 480 gcccaaggtt ctgaacattc tcaccagatt cacacatgtg agtgttaagg taccgtactt 540 ttatccacgt gtggacataa gtgcgcgtgg cgtgctcatt ggcctggcgg cggctgcagc 600 acttgttcct atttgtgctg gcatagcgta cgctaccctc cccagggaaa aactgtctgt 660 gtttaggttg aagacagagg ttcgtgttca tatggaggat gagaaagaag caacagactt 720 gttgttggtt gagcccgctc gggagctcaa gggtaaggat ggtgaggatc tcctcactgg 780 tagcagatta actaaggtga tcgcgtccac ggggcgccct cgcagaaggc cttatgcagc 840 taaaattgca caggtcgcga gagctaaggt gggctatctt aagaacagtc ctgaaaatag 900 actaatctac cagcgagtga tgattgagat catggacaag gactgcgtca ggtatgttga 960 cagggatgtc atattgcctt tggctattgg atgctgtttt gtctatccgg aaggagtgga 1020 agagtcggcg gcactatggg gttcccagga atcccttggt gtcaaatagg gaggcctagt 1080 gcgtctacct ggggtcgtaa cacagatcaa tcgagatatc ccatctgatg tgttacttcc 1140 ccaggaagtg ctagaggttc gtgtaggacc tcccaatgct aagaaccgta acatatttat 1200 ggttgcaggt tgcccatcac aggcacggtt cttagtgcat aatcactgcc tgaaaaacct 1260 caaaaggggt cttgtggaga gagccttctg cgtagagaga aacgggaagc tcgctcgcac 1320 tccacaacct accaaaggag cttttggacg tctttccccg ttcaggaaag cagtctgtga 1380 gaaggttggg gtggcccacc gacttgggta tgatggattt ctgtcatact acagcggtgc 1440 gaaactccgt acttacacac gggctgtgga gagtctgcat atcactcctg tctcggagag 1500 ggatagtcat ttgactacct tcgtcaaggc ggagaagata tcgacgtcca aaaatgaccc 1560 agcacctcgg gtgattcagc ctcgaaaccc gaggtacaat gtggaacttg gaagatatct 1620 acggcatatg gaatccaagc taatgaaagc tgtcgatggc gtgttcggag agacaacatg 1680 catcaaagga tatacggctg atgaggtggg tgcaatcttt cgggctaagt gggacaggtt 1740 tgataaacct gtggccatag ggctcgatgc atccaggttt gatcaacact gttccgtgga 1800 ggctttgcaa tatgaacata gcttctacag ggccttgtac cctggcaaca agctcctggg 1860 caagttgttg gaatggcagc tccataacaa aggcaaaggt tatgtccctg atgggactat 1920 aacctatcgc aaggagggct gccgcatgag tggggacatc aacacctcat tggggaacta 1980 tctattgatg tgtgcaatga tacacgggta catgcgccat ttgggaatta atgaatttag 2040 tctggctaac tgtggggatg actgtgttct tatcttagaa cgtagaaatc ttaagcaggc 2100 acagaaaact ctgcctgagt atttcctaaa cttaggatac actatgaagg ttgagcaacc 2160 tgtattccaa ttggaagcgg ttgagttttg ccaggcacac ccagtacagt ttcaaggtgg 2220 ttggaagatg gtccggaatg tccgcaccgc tatgagcaag gatgtacact gtgtcaataa 2280 tatacgggat ttggcaacga ggagggcttg gagtaatgca caacaccatg gtggactggc 2340 actgagtgct ggaatacctg tggtagagaa gttttactct agattcacct tgtatgatgt 2400 gcccaagaaa catcagcgta tagacacagt gactaatgtg cacaagtggc gtggatcggg 2460 tggtagctat gttgtgaccc ctgaatccag agcgagcttt tgggccgctt ttggactcac 2520 gggggatgag cagctggctc ttgaggaccg tctggacaga tgggagatgg atctatttgg 2580 agaggagggt gttgacgctc atgagcccag catccttgac tccgccgtgg cttgaccaag 2640 taaacacaaa tggcgctagt gagaagaaac aacaactcaa atatggtggc tgtgccagca 2700 gccagggcca ccggtgcagc aatcgggtct atgatgttca gtcccactgg ggctaagtta 2760 ttctggacag gtatggactg ggtgctagat aagacatggc agaagataaa gaaccaattc 2820 aagagtagga agacagacat gattctacac cctggggctt acccaggggc tattgcagcc 2880 cctgtggcag tcactagggt catcagaggt agtaaaccaa aattcacgcg gagtaaggga 2940 gccgttacaa tcactcatcg tgagttggtt gggcaataca ataactccgc gggtctggta 3000 gtcaatgggt cagtgggcgg gacgatttac aaacttaatc catctaacgc tttgttattc 3060 ccgtggttac aatctatagc ctcaaacttt gatcagtaca aatttgataa tgtaaagttg 3120 acatatatac caatgtgtgc cacaactgaa actggcaggg tagccttgta tttcgataag 3180 gactcacaag accctgttcc agcggataga atggagttgg ccaacatgtt tcacttgcgc 3240 gagacagccc cttgggctga atccaattta aatgtaccta ctgataatgt taagaggttt 3300 acgaatgaca acacgactac cgatttgaag ttggtggact tggggcagat agggatagcg 3360 acttttggag gtagtggtac caaccccgtt ggggatttgt tcatccacta tactgtcact 3420 ttctttgagc ctcaaccctc ggcggggatt gtggaaactg agcaaacagg agccggtgca 3480 ctagatagtg gaccagatat ggtgagtgtt ggtggtgacg ccatctccac cttgatagtg 3540 tttaaaactc ccggcacctt catccttact cttgacagcg taataccacc ctggggactg 3600 cttgtaccca ctggtgtgac ggttaattct tctacacatg cgcaagcaac cggattctgc 3660 cagtcaatcg tcaatttgac cgtgagcaca cctggtggta tcctgcagta caatggcact 3720 ggatttggta ataggacggt gaatatcgta cgtgccaagg tcaccaatcg tgttgatatc 3780 atttagcgtc atgttagggg cctcttgaag ttagaccaat tcatggatac tgaatacgaa 3840 caagtcaata aaccatggaa cgagctgtac aaggaggcga cgctagggaa caagctaaca 3900 gtgaacgttg ggatggagga tgtggaggta ccattactcc cttcaaactt tctgacgaaa 3960 gtccgagtct ccatgagtgg aggttacatc acagtgagga gggtgaggat caagatcatc 4020 cccttggttt caaggaaagc tggagtttcg ggaaagttgt atttaagaga tatctcagat 4080 acggcgggac ggaaacttca ttgcacagag ctcttggatc ttgggaaaga aatacggtta 4140 acaatgcagc atctagattt ctcggtttcg gccaaatcgg atgtacctat agtattcggt 4200 ttcgaggatc ttgtctcacc atatctggag ggtcgcgaac tcttcagcgt ctcattgaga 4260 tggcaattcg gactaagtgc acagtgttac agcttacccc cagcgaagtg gaaggtaatg 4320 tatcaggagg aagccctgaa ggcattgaag ccttcgaaaa agaaagcgag taagacagac 4380 tcttcagtct gatgttacgg agatgagtag aacaaagtga gggactatgg gttacccttt 4440 gtagatttgg tccgcatgat gacgagttag gtcaggcccc gcgccaggtt tggtcacctg 4500 ggggatgggg acacggaaag gatctcgcat gctgttagtc tgacgaaagt cgagcttgca 4560 atgtgggtct atgcctaaat aagtcgtgtg ggttgccgcc tacaaggaat tggatgccac 4620 ttttctctca gtgagctctc tcattgaagt agcattagac acggttgatc tcacccttcg 4680 ggggggctat agagatcgct ggaagcacta ccggacaaac cggaacattg cagaaattca 4740 gccc 4744 //