ID AJ607394; SV 1; circular; genomic DNA; STD; VRL; 2758 BP. XX AC AJ607394; XX DT 19-NOV-2003 (Rel. 77, Created) DT 23-JUL-2008 (Rel. 96, Last updated, Version 8) XX DE Sri Lankan cassava mosaic virus segment A, isolate Salem XX KW AC1 (Rep) gene; AC2 (TrAP) gene; AC3 (REn) gene; AC4 gene; AC4 protein; KW AV1 (CP) gene; AV2 gene; AV2 protein; coat protein; complete viral segment; KW replication enhancer protein; replication-associated protein; KW transcriptional transactivator protein. XX OS Sri Lankan cassava mosaic virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2758 RA Dutt N.; RT ; RL Submitted (19-NOV-2003) to the INSDC. RL Dutt N., Plant Molecular Biology, University of Delhi South Campus, Benito RL Juarez Marg, New Delhi 110021, INDIA. XX RN [3] RX DOI; 10.1007/s00705-005-0624-8. RX PUBMED; 16132175. RA Rothenstein D., Haible D., Dasgupta I., Dutt N., Patil B.L., Jeske H.; RT "Biodiversity and recombination of cassava-infecting begomoviruses from RT southern India"; RL Arch. Virol. 151(1):55-69(2006). XX DR MD5; e3460c29fbb24e09f687585175140870. DR EuropePMC; PMC1079959; 15784145. XX FH Key Location/Qualifiers FH FT source 1..2758 FT /organism="Sri Lankan cassava mosaic virus" FT /segment="A" FT /isolate="Salem" FT /mol_type="genomic DNA" FT /db_xref="taxon:161378" FT CDS 137..493 FT /gene="AV2" FT /product="AV2 protein" FT /db_xref="GOA:Q709P1" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:Q709P1" FT /protein_id="CAE54967.1" FT /translation="MWDPLVNEFPESVHGFRCMLAVKYLQLVEGTYSPDTLGYDLIRDL FT ISVIRAKNYVEATSRYHHFNSRLEGSSPSELRQSIQQPCCCPHCPRHKKTSLDKQAHES FT EAQVVQDVQKPRCT" FT CDS 297..1067 FT /gene="AV1 (CP)" FT /product="coat protein" FT /db_xref="GOA:Q709P0" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:Q709P0" FT /protein_id="CAE54968.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYSSRAAVPTVRVTKRQAWT FT NRPMNRKPRWYRMFKSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGVGLTHR FT VGKRFCVKSVYILGKIWMDENIKTKNHTNSVMFFLVRDRRSVDKPQDFGEVFNMFDNEP FT STATVKNMHRDRYQVLRKWSATVTGGQYASKEQALVRRFFRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNAVYATLKIRIYFYDSVSN" FT CDS complement(1064..1468) FT /gene="AC3 (REn)" FT /product="replication enhancer protein" FT /db_xref="GOA:Q709N9" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q709N9" FT /protein_id="CAE54969.1" FT /translation="MDSRTGELITAAQAMNGVYIWEVPNPLYFRIIQHDSRPFNRPWDI FT ITIQIRFNHNLRKALGLHQCWMDFKVWTTLQPQTWRFLRVFKTQVLKYLDRLGIICINT FT VVNAVEHVLYNVIAGTDSIEQSNLIKFNVY" FT CDS complement(1209..1616) FT /gene="AC2 (TrAP)" FT /product="transcriptional transactivator protein" FT /db_xref="GOA:Q709N8" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q709N8" FT /protein_id="CAE54970.1" FT /translation="MRPSSPSASRSTQVPIKVQHRAAKRKAIRRRRVDLNCGCSYYVHI FT NCHNHGFTHRGTHHCSSGDEWRIYLGGSKSPLFQDHPARQPAVQQAVGHNNHPDTLQPQ FT PEESVGTTSMLDGFQGLDDLTASDLAFLEGI" FT CDS complement(1546..2601) FT /gene="AC1 (Rep)" FT /product="replication-associated protein" FT /db_xref="GOA:Q709N7" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q709N7" FT /protein_id="CAE54971.1" FT /translation="MRNPRFRIQSKNIFLTYPKCSLTKEHLLEFFRSLSLPTNIKFIKI FT CRELHQNGEPHLHALLQFEGKLTITNNRQFDCVHPSSSTSFHPNIQSAKSSSDVKSYID FT KDGDTIDWGEFQIDGRSARGGQQSANDAYAAALNTGSKPEALRVIKELAPKDYVLQFHN FT LNANLDRIFTPPPEVYVSPFSASSFDQVPDELEEWVSENVMGASARPLRPNSIVIEGDS FT RTGKTMWARSLGPHNYLCGHLDLSPRVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQ FT SNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEAKNSALKAWALKNATFISLSEPLY FT SGSNQGPTQGS" FT CDS complement(2145..2447) FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:Q709N6" FT /protein_id="CAE54972.1" FT /translation="MGNLTSMLCFSSKGSSQSQTIGNSIVYTQAVAPVSTPTYRALSPA FT QTSSPTSTRMETPSTGVSFRSMEDLQEEDSSQQTTLTPQHLTQAVSQRLLESLRS" XX SQ Sequence 2758 BP; 694 A; 616 C; 659 G; 789 T; 0 other; accggatggc cgcgcccccc gctttgtggt ggaccccccc ccacgtggag atgtccccca 60 cttagaacgc tccctcaaag cctgtatagt tgtggtccct ctttaagtac ttgctcagca 120 agttgtaatc tgcacaatgt gggacccttt ggtaaacgag ttccctgaat cagttcacgg 180 tttccggtgt atgcttgccg tgaaatatct tcagctagtt gaaggtactt attcccccga 240 tacactcggt tacgatttaa tcagagattt gatctctgtc atcagggcca aaaattatgt 300 cgaagcgacc agcagatatc atcatttcaa ctcccgcctc gaaggttcgt cgccgtctga 360 acttcgacag tccatacagc agccgtgctg ctgtccccac tgtccgcgtc acaaaaagac 420 aagcctggac aaacaggccc atgaatcgga agcccaggtg gtacaggatg ttcaaaagcc 480 cagatgtacc taggggatgt gaaggcccat gtaaggttca atcgtttgag tccagacacg 540 atgtggtcca tataggtaag gtcatgtgca tctctgatgt cactcgtgga gttgggctta 600 ctcatcgcgt gggtaagagg ttttgcgtca agtccgttta catcctgggc aagatatgga 660 tggatgaaaa tatcaagacg aagaatcaca cgaacagtgt gatgttcttc ctcgtaaggg 720 atcgtaggtc tgttgataag ccccaggatt ttggtgaagt gtttaatatg ttcgataatg 780 aacctagtac agctacggtg aagaacatgc atcgtgatcg ctatcaagtc ctcaggaagt 840 ggagtgccac agtcactggt ggtcagtatg cgagcaagga acaggcttta gttaggcgtt 900 tttttagagt taataattat gttgtgtata accagcaaga ggctggcaag tatgaaaatc 960 ataccgagaa tgcattgatg ctgtacatgg cgtgtactca tgcctctaac gctgtatacg 1020 ctacgctgaa gattagaatc tacttctacg attcggtcag caattaataa acattaaatt 1080 ttattaaatt agactgctca atactgtcag tcccagcgat tacattatat aatacatgtt 1140 ctacggcgtt tacaaccgta ttaatacata taatccctaa tctatcgagg tattttaata 1200 cttgggtctt aaataccctc aagaaacgcc aggtctgagg ctgtaaggtc gtccagacct 1260 tgaaatccat ccagcattga tgtagtccca acgctttcct caggttgtgg ttgaagcgta 1320 tctggatggt tattatgtcc cacggcctgt tgaacggccg gctgtcgtgc tggatgatcc 1380 tgaaatagag gggatttgga acctcccaga tatatacgcc attcatcgcc tgagctgcag 1440 tgatgagttc ccctgtgcgt gaatccatgg ttgtggcagt tgatgtgcac gtagtatgag 1500 cagccgcaat tgaggtctac tctccgtcgc cgaatggcct tacgcttagc tgccctgtgt 1560 tggaccttga ttggaacctg agtagagcgg ctcgctgagg gagatgaagg tcgcattctt 1620 cagagcccaa gccttcaatg cgctattctt cgcctcgtca aggaattctt tatagctgga 1680 attgggccca ggattgcaga ggaagatagt gggaattccc cctttaattt gaactggctt 1740 cccgtacttg gtgtttgact gccagtctct ttgggccccc atgaattcct taaagtgctt 1800 tagatagtgc ggatctacgt catcaattac gttgtaccat gcatcattgc tgtaaaccct 1860 aggactcaag tccagatgtc cacacagata attgtgtgga cctaatgacc tagcccacat 1920 tgttttgcct gtacgactat cgccctcgat gactatactg ttaggtctca aaggcctcgc 1980 agaggcaccc atgacgttct ctgacaccca ctcctcaagt tcatctggaa cttggtcaaa 2040 tgaagaggct gagaagggag acacatatac ctcgggagga ggtgtaaaaa tcctatctaa 2100 attagcattt agattatgaa attgtaaaac ataatccttg ggtgctaact ccttaatgac 2160 tctaagagcc tctggcttac tgcctgtgtt aagtgctgcg gcgtaagcgt cgtttgctga 2220 ctgctgtcct cctcttgcag atcttccatc gatctgaaac tcaccccagt cgatggtgtc 2280 tccatccttg tcgatgtagg acttgacgtc tgagctggac ttagcgctct gtatgttggg 2340 gtggaaactg gtgctactgc ttgggtgtac acaatcgaat tgccgattgt ttgtgattgt 2400 gagcttccct tcgaactgaa gcagagcatg gaggtgaggt tccccattct gatggagttc 2460 tctgcaaatt ttaataaatt tgatgtttgt cggaagactc aagcttcgga agaactcgag 2520 taagtgttct ttggtgagag aacacttagg gtatgtgagg aatatatttt tggactgaat 2580 tctgaatcgt gggtttctca tctttgactc ggtcaattgg agacacccct gagcaagtct 2640 ctagtgaatt ggagacaata tatatgtgtc tccaaatggc attcttgtaa ttctcaaaag 2700 ttacagtcaa atttcaaatt tgaatttgag atccaaaagc ggccatccgt ataatatt 2758 //