ID AJ606361; SV 1; linear; genomic RNA; STD; VRL; 6448 BP. XX AC AJ606361; XX DT 07-JAN-2005 (Rel. 82, Created) DT 15-APR-2005 (Rel. 83, Last updated, Version 3) XX DE Pepino mosaic virus complete genome, isolate LP-2001 XX KW coat protein; complete genome; CP gene; RdRp gene; KW RNA-directed RNA polymerase; TGB1 protein; TGB2 protein; TGB3 protein; KW TGBp1 gene; TGBp2 gene; TGBp3 gene. XX OS Pepino mosaic virus OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus. XX RN [1] RP 1-6448 RA Lopez C.; RT ; RL Submitted (12-NOV-2003) to the INSDC. RL Lopez C., COMAV, Universidad Politecnica de Valencia, Camino de Vera 14, RL 46022 Valencia, SPAIN. XX RN [3] RX DOI; 10.1007/s00705-004-0438-0. RX PUBMED; 15592891. RA Lopez C., Soler S., Nuez F.; RT "Comparison of the complete sequences of three different isolates of Pepino RT mosaic virus: size variability of the TGBp3 protein between tomato and L. RT peruvianum isolates"; RL Arch. Virol. 150(3):619-627(2005). XX DR MD5; 0a166d71d5ab20cca3a24ec0eed2b962. DR EuropePMC; PMC3132167; 21702943. DR EuropePMC; PMC3356388; 22623984. DR EuropePMC; PMC3957916; 24390328. XX FH Key Location/Qualifiers FH FT source 1..6448 FT /organism="Pepino mosaic virus" FT /host="Lycopersicon peruvianum (Peruvian tomato)" FT /isolate="LP-2001" FT /mol_type="genomic RNA" FT /country="Peru:Arequipa" FT /db_xref="taxon:112229" FT 5'UTR 1..84 FT CDS 85..4404 FT /gene="RdRp" FT /product="RNA-directed RNA polymerase" FT /EC_number="2.7.7.48" FT /db_xref="GOA:Q5K4J4" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q5K4J4" FT /protein_id="CAE54474.1" FT /translation="MSRVRNTLEKIRDPQVQSSICEAAYQHVRPVLKESLINCPYALND FT YEADTLENLGVTINPHAIQTHTHAAAKVVENRMLEIVGHHLPKDEKVTFIFLKRSKLRY FT MRRAAVHKDVFVNHNIEPKDFFRYDEESTSTSFSVNTRIAYISDSLHFMEPADVTHLFD FT RCQNLKTLMATVVLPVEAIHRQTSLFPAIYSINYNEEGFEYIPGSHGGGAYFHKYETLE FT WLKYSRFIGHDPLTGLKYTITIQMVESLGANHLFLFQRGNFETPLYRTFQKNSFVTFPN FT IFHPRHVNATKPMPRSRAIQLYLYVKSVNKVTQRDIFAKLRQLISTAELELYDPDELTH FT VVNYFTYVSQLSSINDYDNMLKSSFFKKLVAPMQHDWRCMIEFFRGKSDFNQLLTALQW FT KDFSYTIKTDELVITTHTAIGQAICNAAATYKERRQLTQLVKNGTISLADFEQKEPEIT FT YTEFEPETRPQVDCVTNYNNAVRNLGLSALDEQPQCSSSNSHIPCNEISLAMTDDDNAA FT AIHEIESLLSEPIIAPQLPALPHKTWASYASDTSSMKNREIENIIAELEISRKENNVQQ FT TTHDYHAVSDTAQNSGGLPWKAWIPLLNAHGFKGDQLQYSPDGKVIQPIQDINNKTPRS FT EYPSSIPADLVTTLRNIKRAVYAIPISHRRASAYSSDIKNNRTGKLLCSQSKEWKESFA FT FKMRHEDIVKSGVVIHGCGGSGKSQALQNFLRTLGDTNDCCTVVVPTVELRNDWVNKLC FT KLPMEHIKTFEKAMIQPGFPVVIFDDYTKLPPGYIEAYLFHHANTELFILTGDSRQSVY FT HESNNEAYIASLDEAVAYYANYCGFYLNATHRNVRSLANKLGVYSEKEGHLKITFASNA FT LQKCKVPILVPSKMKKGAMQDIGHKAMTYAGCQGLTAPRVQILLDNHTQHCSDRVLYTC FT LSRAVDSIHFINTGPNNSEFWDKLEATPYLKAFIDTYRDEKTEMLNSKPADDSPTEPEA FT PLTHFPVSNGNNLEKLASALPEKFARELYDKHHGYSNTIQTENPVVQLFQHQQAKDETL FT FWATIEARLSITTPEANLREFVLKKDVGDILFFNYHNAMCLPADPVDFEPRTWEICAAE FT VKNTYLAKPMANLINAASRQSPDFDTNKISLFLKSQWVKKVEKLGAVKSKPGQTIAAFM FT QQTVMLYGTMARYLRKMRQRFQPKHIFINCETTTDDLNQFVKQGWNFNRTAQTNDFTAF FT DQSQDGAMLQFEVMKAKFFNIPADIIEGYINIKLNAKIFLGTLSIMRLSGEGPTFDANT FT ECSIAYTATRYHLDSTVKQVYAGDDMALDGVVQEKPSFKNLQNKLKLTSKTLFPKQVKG FT DYAEFCGWTFTPGGIIKNPLKMHASIMLQEAIGNLHTAARSYAIDMKHSYQMGDELHDY FT LTPDEAEQHFLAVRKLHKLHQGEAMRLGEKSPPKSTH" FT CDS 4430..5134 FT /gene="TGBp1" FT /product="TGB1 protein" FT /db_xref="GOA:Q5K4J3" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q5K4J3" FT /protein_id="CAE54475.1" FT /translation="MERSTLINLLQLHHFEPKLSVEGIIVVHGIAGTGKTTLLRTLFSA FT YPSLVIGSPRPCYLDKQNKISQVCLSCFPNTHCDIVDEYHLLESFPEPKLAIFGDPCQC FT TYVERLRVPHYTSFRTHRFGKSTAEILNKLFDLNIISVKKEDDIVEFFNPFEVDPTEHI FT SASEEEVLDFVSDQVVTTSSEELAGLEFAETTFYCTTLAAAVAENPAKTFISLTRHTHK FT LTIGELNARSNS" FT CDS 5115..5486 FT /gene="TGBp2" FT /product="TGB2 protein" FT /db_xref="GOA:Q5K4J2" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:Q5K4J2" FT /protein_id="CAE54476.1" FT /translation="MPGLTPRADLTDTYKIIAIAFLLSACIYFQNSHYQPVAGDNLHRL FT PFGGQYQDGTKRISYFPQQQSYFHSGNKLNVLILIFILTLGIVLTNKFSFSFSRTTHQH FT SCYNTHSATNNTQPLSGHH" FT CDS 5338..5598 FT /gene="TGBp3" FT /product="TGB3 protein" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/TrEMBL:Q5K4J1" FT /protein_id="CAE54477.1" FT /translation="MSSYLSSFSHWVLSSPINLVLALVVLLTSILAITHIQQPTTHNHC FT QVIIDGAAIVITNCENTPEVLKAINFSPWNGLSFPKFENQY" FT CDS 5631..6344 FT /gene="CP" FT /product="coat protein" FT /db_xref="GOA:Q8JJF2" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:Q8JJF2" FT /protein_id="CAE54478.1" FT /translation="MPDTTPVAATSSAPPTAKDAGAKAPSDFSNPNTAPSLSDLKKVKY FT VSTVTSVATPAEIEALGKIFTAMGLAANETGPAMWDLARAYADVQSSKSAQLIGATPSN FT PALSRRALAAQFDRINITPRQFCMYFAKVVWNILLDSNIPPANWAKLGYQEDTKFAAFD FT FFDGVTNPASLQPADGLIRQPNEKELAAHSVAKYGALARQKISTGNYITTLGEVTRGHM FT GGANTMYAIDAPPEL" FT 3'UTR 6345..6408 FT polyA_site 6409 XX SQ Sequence 6448 BP; 2094 A; 1464 C; 1165 G; 1725 T; 0 other; gaaaacaaaa tataaacaaa tatacaaagt taaactaaca caacataacc acgtggaaaa 60 acagcgaaag cactttacca cattatgtct cgtgtcagga atactttgga aaagatcaga 120 gacccacaag tacagtccag catttgcgaa gccgcatatc aacatgttcg acccgtactt 180 aaagaatctc taatcaattg tccttatgcg cttaatgatt atgaagcaga cacccttgag 240 aatcttggtg tcacaattaa tccccacgca atccaaacac acacacatgc cgcagctaaa 300 gtagttgaaa atcgtatgct tgaaatcgtt ggacatcact tgccaaaaga tgaaaaggta 360 acttttatct tcctcaaacg tagcaagctg cgttacatga gaagagctgc tgtgcataaa 420 gatgtctttg tcaatcataa cattgaacca aaagacttct tcaggtatga tgaagagtct 480 acatcaacta gcttttccgt taatacgaga atcgcataca tttcagattc tctacacttt 540 atggaacctg ctgatgtgac tcacttgttt gaccgttgcc aaaaccttaa aacattaatg 600 gcaactgttg tactacctgt tgaagctata cacagacaga catccctatt ccctgccatt 660 tactccatta actacaatga agaaggcttt gagtacatcc caggatcaca cggtggtggg 720 gcatatttcc acaaatatga aaccctagaa tggctcaaat actctagatt cattggacat 780 gatccattga ctggtttaaa atacaccatt acaattcaaa tggtagagag tcttggtgcc 840 aaccaccttt tccttttcca aagaggaaac tttgagacgc cgttataccg gacgtttcaa 900 aagaatagtt ttgtgacatt cccaaatata tttcatcccc gacatgtcaa tgccacaaaa 960 cctatgccta gatcaagggc catacagctg tacctatatg tgaaatcagt aaataaagtt 1020 acgcaaagag acatatttgc taaacttaga caactgattt ccactgctga actagaattg 1080 tatgaccctg atgaactcac gcatgttgta aattatttca catatgtgtc acaactgtca 1140 tctatcaatg attatgacaa catgctcaaa tccagtttct ttaaaaaact ggtggcaccc 1200 atgcaacacg actggaggtg catgattgaa ttcttccggg gaaagagtga cttcaatcaa 1260 ctgctaacag ctcttcaatg gaaagatttt tcatacacta ttaagactga tgagcttgta 1320 atcactacac acactgctat aggacaagca atatgcaatg cagctgctac atataaagaa 1380 agaaggcagc tgactcaatt ggtcaaaaat ggtacaatat ccttagcaga ttttgaacag 1440 aaagaacctg aaataaccta cactgaattt gagcctgaaa ctaggcccca ggtggactgc 1500 gttactaatt acaataatgc agtcagaaat ttaggtcttt ctgcactcga tgaacagcct 1560 caatgttcat cttctaacag tcatataccc tgcaatgaaa tatctctagc aatgactgat 1620 gatgataatg ctgcggccat tcatgaaatt gaatctctat tgtctgaacc gataatagct 1680 cctcaactcc cagcattgcc acacaagaca tgggctagtt atgcttccga cacatcatct 1740 atgaagaacc gtgaaattga gaacataatt gctgagcttg aaatctcacg gaaggaaaac 1800 aatgtgcagc aaactactca tgattaccat gctgtttctg atactgctca aaactctgga 1860 ggtctcccat ggaaagcatg gattccactt ctgaatgcac acggctttaa gggagaccaa 1920 cttcaataca gtcctgatgg caaagtgatt cagccaattc aggacatcaa taacaaaaca 1980 ccaagatctg agtacccatc cagtattcct gcagatcttg taactacact gcgaaacatt 2040 aaaagagcag tgtatgccat tcctattagc catcgaaggg caagtgctta cagctctgat 2100 atcaagaaca ataggactgg caaattgctt tgctcccaat caaaagaatg gaaggaaagt 2160 tttgctttca aaatgcgaca tgaagacatc gttaaatctg gagtggtcat tcatggctgt 2220 ggtggctctg gaaaatcaca agcattacaa aactttctca gaactcttgg cgacaccaac 2280 gactgttgca cagtggtggt gccaactgtt gagctcagaa atgattgggt gaacaaattg 2340 tgcaaactac ccatggaaca cattaaaaca tttgaaaaag caatgattca accaggattc 2400 ccagtcgtta tctttgatga ctacaccaaa ttgccacctg gttacattga agcctatttg 2460 ttccaccatg ccaacaccga acttttcatt ctcactggag actcgcggca aagtgtatat 2520 catgagtcca acaatgaagc atacattgcc tccttagatg aagccgttgc ttactatgct 2580 aactactgcg gattttacct aaatgctaca catagaaatg ttcgcagttt agccaataag 2640 ctaggtgttt acagtgagaa agaaggccac ctcaaaatta cctttgcctc aaatgctcta 2700 caaaagtgca aagtgccaat tttagtgcct tctaaaatga agaaaggtgc catgcaagac 2760 atagggcaca aagccatgac ctacgctggt tgtcaagggc ttactgctcc aagagtccaa 2820 attttgcttg acaaccacac acaacactgc tcagacaggg tgctgtacac atgtctctct 2880 agagctgttg attccatcca ttttatcaat acaggtccaa acaattctga attttgggac 2940 aagctcgagg caacaccata cctcaaagca tttattgata cttacagaga tgagaaaaca 3000 gaaatgctca attctaaacc tgctgacgac agtcctactg agcctgaagc tccattgact 3060 cactttccag tgtccaacgg caacaacttg gaaaagttag cttcagcact tcctgaaaaa 3120 tttgcaaggg agttgtatga caaacaccat gggtattcta acacaatcca aactgaaaat 3180 ccagtggtac aacttttcca gcatcaacaa gccaaagatg aaacgctttt ctgggcaaca 3240 atagaagcta gactttctat tacaactccg gaagccaatt tacgagaatt tgtgctgaag 3300 aaagatgttg gagacatctt gtttttcaac taccacaatg cgatgtgctt acccgctgat 3360 ccagtggact ttgagccaag aacatgggaa atatgtgctg ctgaagttaa aaatacttac 3420 ttagccaaac caatggctaa cctgatcaat gctgctagca gacaatctcc tgattttgat 3480 actaataaaa tttccctgtt cttaaaatct caatgggtca aaaaagtgga aaaattaggt 3540 gctgtcaaat caaagcctgg ccagaccatc gcagctttca tgcaacaaac agtgatgttg 3600 tatgggacca tggccagata cctcagaaag atgagacaaa gattccaacc aaagcatatt 3660 ttcattaatt gtgagacaac aacggatgat ctgaaccaat ttgttaaaca aggttggaac 3720 tttaacagaa ctgctcagac aaatgatttc acagcttttg accaatcaca agatggtgca 3780 atgcttcaat ttgaagtcat gaaggcaaaa ttcttcaata tccctgctga cattattgaa 3840 ggatacatca atatcaaatt gaacgccaaa attttccttg gtacattgtc cattatgagg 3900 ttgtctggtg aaggtccaac ttttgatgct aacacagaat gttcaatagc atatactgct 3960 acaagatacc atctcgattc cacagtcaag caggtttatg ctggagatga catggcatta 4020 gatggagttg tccaagaaaa accctctttc aaaaatttac agaacaagct taaactcacc 4080 tcaaagacac tatttccaaa gcaggtcaaa ggtgattacg ctgaattctg tggttggact 4140 ttcactcctg gtggcatcat taaaaaccct ttgaaaatgc atgcttcaat catgttgcaa 4200 gaggcaattg gcaatttgca cactgctgcc agatcatatg ccattgacat gaagcattca 4260 taccaaatgg gtgatgagct gcatgattac ttaacaccag atgaagctga acaacatttc 4320 cttgctgttc ggaaattgca caagctacac caaggagaag caatgagact tggtgaaaag 4380 agccctccaa aatcaacaca ttgaggggtt aagtttttcc cagtttgaaa tggaaagatc 4440 aactctgatt aatttacttc aattgcacca cttcgagcca aaactcagtg ttgaaggaat 4500 catagttgtg cacggaattg caggaactgg gaaaaccact ttacttagga ctttattttc 4560 tgcttaccct agcttagtta taggttcacc taggccttgt tatttagaca aacaaaataa 4620 aatttcacaa gtttgcttat cttgctttcc caatacccat tgtgacattg ttgatgagta 4680 tcatttgcta gaaagtttcc cagaaccaaa attggctatc tttggtgacc cctgtcaatg 4740 cacatacgtt gaaagactta gagtcccaca ttacacttcc ttcagaactc atagatttgg 4800 aaagtcaact gctgagattt tgaacaaact gtttgatctt aatataatct cagttaagaa 4860 agaagacgac attgttgaat tctttaaccc tttcgaagtt gaccccactg aacatatctc 4920 agcctctgaa gaagaagtct tagactttgt ttctgaccaa gtggtgacca ccagctcaga 4980 agaactagca ggacttgaat ttgctgaaac aactttctac tgcaccacac tggcagcagc 5040 cgttgctgaa aatcctgcta agactttcat ctctctgacc agacacactc acaaactcac 5100 cattggggaa ctaaatgcca ggtctaactc ctagagctga cctcactgac acatacaaaa 5160 tcattgccat tgccttcttg ttgtcagcct gcatttactt ccaaaatagc cactaccaac 5220 ctgttgctgg agacaatttg caccgtttgc cttttggtgg ccaatatcaa gacggcacta 5280 aaaggatttc ttattttcca caacagcagt catactttca ttctggaaac aaattaaatg 5340 tcctcatact tatcttcatt ctcacattgg gtattgtcct caccaataaa tttagtttta 5400 gctttagtcg tactactcac cagcattctt gctataacac acattcagca accaacaaca 5460 cacaaccatt gtcaggtcat cattgacggt gctgcaatag tcataacaaa ttgtgagaac 5520 acaccagaag tacttaaggc aatcaacttc tccccctgga acgggttaag ttttcctaag 5580 tttgaaaatc aatattgagt gttcacaaca atcaacttca acaaacaatc atgcctgaca 5640 caacacctgt tgctgccact tcaagtgcac cacctacagc caaagatgct ggtgccaaag 5700 ctccttctga cttctcaaat cccaatacag ctcctagtct cagtgatttg aagaaagtca 5760 agtatgtctc cacagtgact tccgtggcca caccagctga aattgaagcc ctaggcaaaa 5820 tcttcaccgc tatgggcctt gccgccaatg agactggtcc ggcgatgtgg gatctagctc 5880 gtgcgtatgc tgatgtgcag agctctaaat ccgcacagct gattggtgct accccttcca 5940 accctgcatt atcacgccga gcccttgctg ctcagtttga tcgaatcaat ataacaccca 6000 ggcaattttg catgtacttt gctaaagttg tttggaacat ccttctcgac agcaatattc 6060 caccagcaaa ttgggctaaa cttggttacc aagaagatac aaaatttgct gcatttgact 6120 tcttcgatgg agtcaccaac cctgccagcc tgcagcctgc tgatggtctc atcaggcaac 6180 caaatgagaa agaactagct gctcactcag tagctaaata tggcgccttg gctaggcaaa 6240 agatctccac aggtaattat attaccacac ttggagaagt cacacgtgga cacatgggtg 6300 gagctaacac catgtacgcg atcgacgcac cccctgaact ttaaacactc gaaacttaat 6360 cagagtgggg ttttctacag tttattttcc taattatttc tttgaaacaa aaaaaaaaaa 6420 aaaaaaaaaa aaaaaaaaaa aaaaaaaa 6448 //