ID AJ606360; SV 1; linear; genomic RNA; STD; VRL; 6449 BP. XX AC AJ606360; XX DT 07-JAN-2005 (Rel. 82, Created) DT 15-APR-2005 (Rel. 83, Last updated, Version 3) XX DE Pepino mosaic virus complete genome, isolate LE-2002 XX KW coat protein; complete genome; CP gene; RdRp gene; KW RNA-directed RNA polymerase; TGB1 protein; TGB2 protein; TGB3 protein; KW TGBp1 gene; TGBp2 gene; TGBp3 gene. XX OS Pepino mosaic virus OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus. XX RN [1] RP 1-6449 RA Lopez C.; RT ; RL Submitted (12-NOV-2003) to the INSDC. RL Lopez C., COMAV, Universidad Politecnica de Valencia, Camino de Vera 14, RL 46022 Valencia, SPAIN. XX RN [3] RX DOI; 10.1007/s00705-004-0438-0. RX PUBMED; 15592891. RA Lopez C., Soler S., Nuez F.; RT "Comparison of the complete sequences of three different isolates of Pepino RT mosaic virus: size variability of the TGBp3 protein between tomato and L. RT peruvianum isolates"; RL Arch. Virol. 150(3):619-627(2005). XX DR MD5; 65329347881fae856c8f32ceef378ec1. DR EuropePMC; PMC3356388; 22623984. XX FH Key Location/Qualifiers FH FT source 1..6449 FT /organism="Pepino mosaic virus" FT /host="Lycopersicon esculentum (tomato)" FT /isolate="LE-2002" FT /mol_type="genomic RNA" FT /country="Spain:Almeria" FT /db_xref="taxon:112229" FT 5'UTR 1..86 FT CDS 87..4406 FT /gene="RdRp" FT /product="RNA-directed RNA polymerase" FT /EC_number="2.7.7.48" FT /db_xref="GOA:Q5K4J9" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q5K4J9" FT /protein_id="CAE54469.1" FT /translation="MSRVRNTLEKIRDPQVQSSICEAAYQHVRPVLKESLINCPYALND FT YEADTLENLGVTINPHAIQTHTHAAAKVVENRMLEIVGHHLPKDEKVTFIFLKRSKLRY FT MRRAAVHKDVFVNHNIEPKDFFRYDEESTSTSFSVDTRIAYISDSLHFMEPADVTHLFD FT RCQNLKTLMATVVLPVEAIHRQTSLFPAIYSINYNEEGFEYIPGSHGGGAYFHKYETLE FT WLKYSRFIGHDPLTGLKYTITIQMVESLGANHLFLFQRGNFETPLYRTFQKNSFVTFPN FT IFHPRHVNATKPMPRSRAIQLYLYVKSVNKVTQRDIFAKVRQLISTAELELYDPDELTH FT VVNYFTYVSQLSSINDYDNMLKSSFFKKLVAPMQHDWRCMIEFFRGKSDFNQLLTALQW FT KDFSYTIKTEELVITTHTAIGQAISNAATTYKERKQLTQLVKKGTISLADFEQREPEIT FT YTEFEPETRPQVDCVTNYNNAVKNLGLSALDEQPQCSSSSSHLPCNEISLAMTDDDNAA FT AIHEIESLLSEPIIAPQLPALPHKTWASYASDTSSMKNREIENIIAELEISRKENNVQQ FT TTHDYHAVSDTAQSSGDLPWKAWIPLLNAHGFKGDQLQYSPDGKVIQPIQDINNKTPRS FT EYPSSIPADLVNTLRNIKRAVYAIPISHRRASAYSSDIKNNRTGKLLCSQSKEWKESFA FT FKMQHEDIVKSGVVIHGCGGSGKSQALQNFLRTLGDSNDCCTVVVPTVELRNDWVNKLC FT KLPMEHIKTFEKAMIQPGFPVVIFDDYTKLPPGYIEAYLFHHANTELFILTGDSRQSVY FT HESNNEAYIASLDEAVAYYANYCGFYLNATHRNVRSLANKLGVYSEKEGHLKITFASNA FT LQKCKVPILVPSQMKKSAMQDIGHKAMTYAGCQGLTAPRVQILLDNHTQHCSDRVLYTC FT LSRAVDSIHFINTGPNNSEFWDKLEATPYLKAFIDTYRDEKTEMLNSKPADDSPAEPEA FT PLTHFPVSNGNNLEKLASALPEKFARELYDKHHGYSNTIQTENPVVQLFQHQQAKDETL FT FWATIEARLSITTPEANLREFVLKKDVGDILFFNYHNVMCLPADPVDFEPRTWEICAAE FT VKNTYLAKPMANLINAASRQSPDFDANKISLFLKSQWVKKVEKLGAVKSKPGQTIAAFM FT QQTVMLYGTMARYLRKMRQRFQPKHIFINCETTTDNLNQFVKQGWNFNRTAQTNDFTAF FT DQSQDGAMLQFEVMKAKFFNIPADIIEGYINIKLNAKIFLGTLSIMRLSGEGPTFDANT FT ECSIAYTATRYHLDSTVKQVYAGDDMALDGVVQEKPSFKKLQNKLKLTSKTLFPKQVKG FT DYAEFCGWTFTPGGIIKNPLKMHASIMLQEAIGNLHTAARSYAIDMKHSYQMGDELHNY FT LTPDEAEQHFLAVRKLHKLHQGEAMRLGEKSPPKATH" FT CDS 4432..5136 FT /gene="TGBp1" FT /product="TGB1 protein" FT /db_xref="GOA:Q5K4J8" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q5K4J8" FT /protein_id="CAE54470.1" FT /translation="MERSTLINLLQLHHFEPKLSVEGIIVVHGIAGTGKTTLLRTLFSA FT YPSLVIGSPRPCYLDKQNKISQVCLSCFPNTHCDIVDEYHLLESFLEPKLAIFGDPCQC FT TYIERLRVPHYTSFRTHRFGKSTAEILNKLFDLNIVSVKKEDDIVEFFNPFEVDPTEHI FT SASEEEVLGFVSDQVVTTSSEELAGLEFAETTFYCTTLAAAVAKNPAKTFISLTRHTHK FT LTIGELNARSNS" FT CDS 5117..5488 FT /gene="TGBp2" FT /product="TGB2 protein" FT /db_xref="GOA:Q8JJH7" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:Q8JJH7" FT /protein_id="CAE54471.1" FT /translation="MPGLTPRADLTDTYKIIAIAFLLSACIYFQNSHYQPVAGDNLHRL FT PFGGQYQDGTKKISYFPQQQSYFHSGNKLNVLILIFILTLGIVLTNKFSFSFSRTTHQH FT SCYNTHSATNNTQPLSGHH" FT CDS 5340..5594 FT /gene="TGBp3" FT /product="TGB3 protein" FT /db_xref="GOA:Q8B083" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/TrEMBL:Q8B083" FT /protein_id="CAE54472.1" FT /translation="MSSYLSSFSHWVLSSPINLVLALVVLLTSILAITHIQQPTIHNHC FT QVIIDGAAIVITNCENTPEVLKAINFSPWNGLSFPKFEN" FT CDS 5632..6345 FT /gene="CP" FT /product="coat protein" FT /db_xref="GOA:Q8JJF2" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:Q8JJF2" FT /protein_id="CAE54473.1" FT /translation="MPDTTPVAATSSAPPTAKDAGAKAPSDFSNPNTAPSLSDLKKVKY FT VSTVTSVATPAEIEALGKIFTAMGLAANETGPAMWDLARAYADVQSSKSAQLIGATPSN FT PALSRRALAAQFDRINITPRQFCMYFAKVVWNILLDSNIPPANWAKLGYQEDTKFAAFD FT FFDGVTNPASLQPADGLIRQPNEKELAAHSVAKYGALARQKISTGNYITTLGEVTRGHM FT GGANTMYAIDAPPEL" FT 3'UTR 6346..6409 FT polyA_site 6410 XX SQ Sequence 6449 BP; 2093 A; 1470 C; 1174 G; 1712 T; 0 other; gaaaacaaaa taaataaaca attatacaaa gttaaactaa cacaacataa ccacgtggaa 60 aaacagcgaa agcactttac cgcattatgt ctcgtgtcag aaatactttg gaaaagatca 120 gagacccaca agtacagtcc agcatttgtg aagctgccta tcaacatgtt cgacctgtac 180 ttaaagaatc tctaatcaat tgtccttacg cgcttaatga ttatgaagca gacacccttg 240 agaatcttgg tgtcacaatt aacccccatg caatccaaac acacacacat gccgcagcca 300 aagtagtcga aaatcgtatg cttgaaattg ttggacatca cttgcctaaa gatgaaaaag 360 taactttcat cttcctcaaa cgtagcaagc tgcgttacat gagaagagct gctgtgcata 420 aagatgtctt tgtcaatcat aacattgaac caaaagactt cttcaggtat gatgaagagt 480 ccacatcaac cagcttttcc gttgatacga gaatcgcata catttcagat tctctacact 540 ttatggaacc tgctgatgtg actcacttgt ttgaccgttg ccaaaacctt aaaacattga 600 tggcaactgt tgtactacct gtggaagcta tacacagaca gacatctcta ttccctgcga 660 tttactccat taactacaat gaagaaggct ttgagtatat cccaggatca cacggtggtg 720 gggcatattt ccacaaatat gaaactctag aatggctcaa atactctaga ttcattggac 780 atgatccatt gactggttta aaatacacca ttacgattca aatggtggag agtcttggtg 840 ccaaccacct tttcctcttc caaagaggaa actttgagac gccgctatac aggacgtttc 900 aaaagaatag ttttgtgaca ttcccaaata tattccatcc ccgacacgtc aatgccacaa 960 aacctatgcc tagatcaagg gccatacagc tgtacttata tgtgaaatca gtaaataaag 1020 ttacgcaaag agatatattt gccaaggtta gacaactgat ttccactgct gagctagaat 1080 tgtatgaccc tgatgaactc acgcatgttg taaattattt cacatatgtg tcacaactgt 1140 catctatcaa tgattatgac aacatgctca aatccagttt cttcaaaaaa ctggttgcac 1200 ccatgcaaca cgactggagg tgcatgattg aattcttccg gggaaagagt gacttcaatc 1260 aactgctcac agctcttcaa tggaaagatt tttcctatac tattaagact gaagagcttg 1320 taattactac acacactgct ataggacaag caataagcaa tgcagctacc acatataaag 1380 aaagaaagca gctgactcaa ttggtcaaaa aaggtacaat atccttagca gattttgaac 1440 agagagaacc tgaaataact tacactgagt ttgagcctga aactaggccc caagtggact 1500 gcgttactaa ttataataat gcagttaaaa atttaggtct ttctgcactt gatgaacagc 1560 ctcaatgttc atcttctagc agtcatctac cctgcaatga aatatcctta gcaatgactg 1620 atgacgacaa tgctgcggcc attcatgaaa ttgaatctct attgtctgaa ccgataatag 1680 ctcctcaact tccagcattg ccacacaaga catgggccag ttatgcttca gacacttcat 1740 ccatgaagaa ccgtgagatt gagaacataa ttgctgagct tgaaatctca cggaaggaaa 1800 ataatgtgca gcaaactact catgattacc atgcagtttc tgacacagct cagagctccg 1860 gagatctccc atggaaagca tggattccac ttctgaatgc acacggcttc aagggagacc 1920 aacttcaata cagtccggat ggcaaagtga ttcagccaat ccaggacatc aacaacaaaa 1980 caccaagatc tgagtaccca tccagcattc ctgcagatct tgtgaataca ctgcgaaaca 2040 ttaaaagagc agtgtatgcc attcctatta gccatcgaag ggcaagtgct tacagctctg 2100 atatcaaaaa caataggacc ggcaaattac tctgttccca atcaaaagaa tggaaggaaa 2160 gttttgcttt caaaatgcaa catgaagaca tcgttaaatc tggagtagtc attcacggct 2220 gtggcggctc tggaaaatca caagcattac aaaactttct cagaactctt ggcgactcta 2280 atgactgctg cacagtggtt gtgccaactg ttgaactcag aaatgattgg gtgaacaaat 2340 tgtgtaagct acccatggaa cacattaaaa catttgaaaa agctatgatt caaccaggat 2400 tcccagttgt tatatttgat gactacacta aattgccacc tggttacatt gaagcctatt 2460 tgttccacca tgccaacact gaacttttca ttcttactgg agactcgcgg caaagtgtat 2520 atcatgagtc caacaatgaa gcatacattg cctcattaga tgaagccgtc gcttattatg 2580 ctaactactg tggattttac ctaaatgcta cacacagaaa tgttcgcagt ttggccaata 2640 agctaggtgt ttacagtgag aaagaaggtc acctcaaaat tacctttgcc tcaaatgctc 2700 tacaaaagtg caaagtgcca attttggtgc cctctcaaat gaagaagagt gctatgcaag 2760 acatagggca caaagccatg acctacgctg ggtgtcaagg gcttactgca ccgagagtcc 2820 aaattttgct tgacaaccac acacaacact gctcagacag ggtgctgtac acttgtctct 2880 ccagagctgt ggattccatc cactttatca atacaggccc aaacaattct gaattttggg 2940 acaagcttga ggcaacacca tacctcaaag catttattga tacttacaga gatgagaaaa 3000 cagaaatgct caattctaag cctgctgatg acagtcccgc tgagcctgaa gctccattga 3060 ctcactttcc agtgtcaaac ggcaataact tggaaaagtt agcttcagcg cttcctgaaa 3120 aatttgcaag agagttatat gataaacacc atggatattc taatacaatc caaactgaaa 3180 atccagtggt gcaacttttc cagcatcaac aagccaaaga tgaaacactt ttctgggcaa 3240 caatagaagc tagactttct attacaactc cggaagccaa cttacgagaa tttgttctaa 3300 agaaagatgt tggagatatc ttgtttttca attaccacaa tgtcatgtgc ttacctgccg 3360 acccagtgga tttcgagcca agaacatggg aaatatgtgc tgctgaagtt aaaaatacat 3420 acttagccaa accaatggct aacttgatca atgctgctag cagacaatct cctgatttcg 3480 acgctaacaa aatttccctg ttcctaaaat ctcaatgggt caagaaagtg gaaaaattag 3540 gtgctgtcaa gtcaaagcct ggccaaacca ttgcagcttt catgcaacaa acagtgatgt 3600 tgtatgggac catggccaga tacctcagaa agatgagaca aagatttcaa ccaaaacata 3660 ttttcatcaa ttgtgaaaca acaactgata atctgaacca atttgttaaa caaggttgga 3720 actttaacag aacagctcag acaaatgatt tcacagcttt tgaccaatca caagatggtg 3780 caatgcttca atttgaagtc atgaaggcaa aattcttcaa tatccctgcc gacatcattg 3840 aaggatacat caacatcaaa ttgaacgcca aaatttttct tggcacattg tccattatga 3900 ggttgtctgg tgaaggtcca acttttgatg ccaacacaga atgttcaata gcatataccg 3960 ctacaagata ccatcttgat tctacagtca agcaggttta tgctggagat gatatggcat 4020 tagatggagt tgtccaagaa aaaccctctt ttaaaaaact acagaacaag cttaaactca 4080 cctcaaagac actatttcca aaacaggtta aaggtgatta tgctgaattc tgtggttgga 4140 ctttcactcc tggtggtatc attaaaaacc ctttgaaaat gcatgcttcc attatgttgc 4200 aagaggcaat cggcaattta cacactgctg ccagatcata tgccattgac atgaagcatt 4260 cataccaaat gggtgatgag ctgcacaatt acttaacacc agatgaagct gaacaacact 4320 tccttgctgt tcggaagttg cacaagttac accaaggaga agcaatgaga cttggtgaaa 4380 agagccctcc aaaagcaaca cattgagggg ttaagttttc cccagttcga aatggaaaga 4440 tcaactctga ttaatttact tcaattgcac cacttcgagc caaaactcag tgttgaagga 4500 atcatagttg tgcacggaat tgcaggcact gggaaaacca ctttacttag gactttattt 4560 tctgcttacc ctagcttagt tataggttca cctaggcctt gctatttaga taaacaaaac 4620 aaaatttcac aagtttgctt atcttgcttt cccaataccc attgtgatat tgtcgatgag 4680 tatcatttgc tagaaagttt tctagaacca aaattggcta tctttggtga cccctgtcaa 4740 tgcacataca ttgagagact tagagtccca cattacactt ccttcagaac tcatagattt 4800 ggaaagtcaa ctgctgagat tttgaacaaa ctgtttgacc tcaatatagt ctcagtcaag 4860 aaagaagacg acatcgttga attctttaac ccttttgaag ttgaccccac tgagcatatc 4920 tctgcctctg aagaagaagt cttgggcttt gtttctgacc aagtggtgac cactagctca 4980 gaggaactag caggacttga gtttgcagaa acaactttct actgcacaac attggccgca 5040 gctgttgcta aaaatcctgc taagactttc atctctctga ctagacacac ccacaaactc 5100 accattgggg aactaaatgc caggtctaac tcctagagct gacctcactg acacatacaa 5160 aatcattgcc attgctttct tgttgtcagc ttgcatttac ttccaaaata gccactacca 5220 acctgttgct ggagacaact tgcaccgttt gccttttggt ggccaatatc aagacggcac 5280 caaaaagata tcttattttc cacaacagca gtcatacttt cactctggaa acaaattaaa 5340 tgtcctcata cttatcttca ttctcacatt gggtattgtc ctcaccaata aatttagttt 5400 tagctttagt cgtactactc accagcattc ttgctataac acacattcag caaccaacaa 5460 tacacaacca ttgtcaggtc atcattgacg gtgctgcaat agtcataaca aattgtgaga 5520 acacaccaga agtgcttaaa gcaatcaact tctccccttg gaacgggtta agttttccta 5580 aatttgaaaa ttaatattga gtgttcacaa aatcaacttc aataaacaat catgcctgac 5640 acaacacctg ttgctgccac ttcaagtgca ccacccacag ccaaagatgc tggtgccaaa 5700 gctccttctg acttctcaaa tcccaataca gctcctagtc tcagtgattt gaagaaagtc 5760 aagtatgtct ccaccgtgac ctccgtggcc acaccagctg aaattgaagc cctaggcaaa 5820 atcttcaccg ctatgggcct tgccgccaat gagactggtc cggccatgtg ggatctagct 5880 cgtgcatatg ctgatgtgca gagttctaaa tcggcacagc tgattggagc taccccttcc 5940 aaccctgcac tatcacgccg agcccttgct gctcagtttg atcgaatcaa tataaccccc 6000 aggcaatttt gcatgtactt tgccaaagtt gtttggaaca tacttctcga cagcaacatt 6060 ccaccagcaa attgggccaa acttggctac caagaagata caaaatttgc tgcatttgac 6120 ttcttcgatg gagtcaccaa ccctgccagc ctgcagcctg ctgatggtct tatcaggcag 6180 ccaaatgaga aagaactagc tgctcactcc gtagctaagt acggcgcctt ggctaggcaa 6240 aagatctcca caggtaatta tattaccaca cttggagaag tcacacgtgg acacatggga 6300 ggagctaaca ccatgtacgc gatagacgcg ccccctgaac tttaaacact cgaaacttaa 6360 tcagagtggg gttttctaca gtttattttc ctaattattt ctttgaaaca aaaaaaaaaa 6420 aaaaaaaaaa aaaaaaaaaa aaaaaaaaa 6449 //