ID AJ606359; SV 1; linear; genomic RNA; STD; VRL; 6450 BP. XX AC AJ606359; XX DT 07-JAN-2005 (Rel. 82, Created) DT 15-APR-2005 (Rel. 83, Last updated, Version 3) XX DE Pepino mosaic virus complete genome, isolate LE-2000 XX KW coat protein; complete genome; CP gene; RdRp gene; KW RNA-directed RNA polymerase; TGB1 protein; TGB2 protein; TGB3 protein; KW TGBp1 gene; TGBp2 gene; TGBp3 gene. XX OS Pepino mosaic virus OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus. XX RN [1] RP 1-6450 RA Lopez C.; RT ; RL Submitted (12-NOV-2003) to the INSDC. RL Lopez C., COMAV, Universidad Politecnica de Valencia, Camino de Vera 14, RL 46022 Valencia, SPAIN. XX RN [2] RX DOI; 10.1007/s00705-004-0438-0. RX PUBMED; 15592891. RA Lopez C., Soler S., Nuez F.; RT "Comparison of the complete sequences of three different isolates of Pepino RT mosaic virus: size variability of the TGBp3 protein between tomato and L. RT peruvianum isolates"; RL Arch. Virol. 150(3):619-627(2005). XX DR MD5; 3327c055ee29e1190fc8328c4aed4b8c. DR EuropePMC; PMC3356388; 22623984. XX FH Key Location/Qualifiers FH FT source 1..6450 FT /organism="Pepino mosaic virus" FT /host="Lycopersicon esculentum (tomato)" FT /isolate="LE-2000" FT /mol_type="genomic RNA" FT /country="Spain:Murcia" FT /db_xref="taxon:112229" FT 5'UTR 1..86 FT CDS 87..4406 FT /gene="RdRp" FT /product="RNA-directed RNA polymerase" FT /EC_number="2.7.7.48" FT /db_xref="GOA:Q5K4K4" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q5K4K4" FT /protein_id="CAE54464.1" FT /translation="MSRVRNTLEKIRDPQVQSSICEAAYQHVRPVLKESLINCPYALND FT YEADTLENLGVTINPHAIQTHTHAAAKVVENRMLEIVGHHLPKDEKVTFIFLKRSKLRY FT MRRAAVHKDVFVNHNIEPKDFFRYDEESTSTSFSVDTRIAYISDSLHFMEPADVTHLFD FT RCQNLKTLMATVVLPVEAIHRQTSLFPAIYSINYNEEGFEYIPGSHGGGAYFHKYETLE FT WLKYSRFIGHDPLTGLKYTITIQMVESLGANHLFLFQRGNFETPLYRTFQKNSFVTFPN FT IFHPRHVNATKPMPRSRAIQLYLYVKSVNKVTQRDIFAKVRQLISTAELELYDPDELTH FT VVNYFTYVSQLSSINDYDNMLKSSFFKKLVAPMQHDWRCMIGFFRGKSDFNQLLTALQW FT KDFSYTIKTEELVITTHTAIGQAISNAATTYKERKQLTQLVKKGTISLADFEQREPEIT FT YTEFEPETRPQVDCVTNYNNAVKNLGLSALDEQPQCSSSSSHLPCNEISLAMTDDDNAA FT AIHEIESLLSEPIIAPQLPALPHKTWASYASDTSSMKNREIENIIAELEISRKENNVQQ FT TTHDYHAVSDTAQSSGDLPWKAWIPLLNAHGFKGDQLQYSPDGKAIQPIQDINNKTPRS FT EYPSSIPADLVNTLRNIKRAVYAIPISHRRASAYSSDIKNNRTGKLLCSQSKEWRESFA FT FKMQHEDIVKSGVVIHGCGGSGKSQALQNFPRTLGDSNDCCTVVVPTVELRNDWVNKLC FT KLPMEHIKTFEKAMIQPGFPVVIFDDYTKLPPGYIEAYLFHHANTELFILTGDSRQSVY FT HESNNEAYIASLDEAVAYYANYCGFYLNATHRNVRSLANKLGVYSEKEGHLKITFASNA FT LQKCKVPILVPSQMKKSAMQDIGHKAMTYAGCQGLTAPRVQILLDNHTQHCSDRVLYTC FT LSRAVDSIHFINTGPNNSEFWDKLEATPYLKAFIDTYRDEKTEMLNSKPADDSPAEPEA FT PLTHFPVSNGNNLEKLASALPEKFARELYDKHHGYSNTIQTENPVVQLFQHQQAKDETL FT FWATIEARLSITTPEANLREFVLKKDVGDILFFNYHNVMCLPADPVDFEPRTWEICAAE FT VKNTYLAKPMANLINAASRQSPDFDANKISLFLKSQWVKKVEKLGAVKSKPGQTIAAFM FT QQTVMLYGTMARYLRKMRQRFQPKHIFINCETTTDNLNQFVKQGWNFNRTAQTNDFTAF FT DQSQDGAMLQFEVMKAKFFNIPADIIEGYINIKLNAKIFLGTLSIMRLSGEGPTFDANT FT ECSIAYTATRYHLDSTVKQVYAGDDMALDGVVQEKPSFKKLQNQLKLTSKTLFPKQVKG FT DYAEFCGWTFTPGGIIKNPLKMHASIMLQEAIGNLHTAARSYAIDMKHSYQMGDELHNY FT LTPDEAEQHFLAVRKLHKLHQGEAMRLGENSPPKATH" FT CDS 4432..5136 FT /gene="TGBp1" FT /product="TGB1 protein" FT /db_xref="GOA:Q5K4K3" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q5K4K3" FT /protein_id="CAE54465.1" FT /translation="MERSTLINLLQLHHFEPKLSVEGIIVVHGIAGTGKTTLLRTLFSA FT YPSLVIGSPRPCYLDKQNKISQVCLSCFPNTHCDIVDEYHLLESFPEPKLAIFGDPCQC FT TYIERLRVPHYTSFRTHRFGKSTAEILNKLFDLNIVSVKKEDDIIEFFNPFEVDPTEHI FT SASEEEVLDFVSDQVVTTSSEELAGLEFAETTFYCTTLAAAVAENPAKTFISLTRHTNK FT LTIGELNARSNS" FT CDS 5117..5488 FT /gene="TGBp2" FT /product="TGB2 protein" FT /db_xref="GOA:Q8JJH7" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:Q8JJH7" FT /protein_id="CAE54466.1" FT /translation="MPGLTPRADLTDTYKIIAIAFLLSACIYFQNSHYQPVAGDNLHRL FT PFGGQYQDGTKKISYFPQQQSYFHSGNKLNVLILIFILTLGIVLTNKFSFSFSRTTHQH FT SCYNTHSATNNTQPLSGHH" FT CDS 5340..5594 FT /gene="TGBp3" FT /product="TGB3 protein" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/TrEMBL:Q8JV10" FT /protein_id="CAE54467.1" FT /translation="MSSYLSSFSHWVLSSPINLVLALVVLLTSILAITHIQQPTIHNHC FT QVTIDGAAIVITNCENTPEVLKAINFSPWNGLSFPKFEN" FT CDS 5633..6346 FT /gene="CP" FT /product="coat protein" FT /db_xref="GOA:Q8JJF2" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:Q8JJF2" FT /protein_id="CAE54468.1" FT /translation="MPDTTPVAATSSAPPTAKDAGAKAPSDFSNPNTAPSLSDLKKVKY FT VSTVTSVATPAEIEALGKIFTAMGLAANETGPAMWDLARAYADVQSSKSAQLIGATPSN FT PALSRRALAAQFDRINITPRQFCMYFAKVVWNILLDSNIPPANWAKLGYQEDTKFAAFD FT FFDGVTNPASLQPADGLIRQPNEKELAAHSVAKYGALARQKISTGNYITTLGEVTRGHM FT GGANTMYAIDAPPEL" FT 3'UTR 6347..6410 FT polyA_site 6411 XX SQ Sequence 6450 BP; 2097 A; 1469 C; 1174 G; 1710 T; 0 other; gaaaacaaaa taaataaata aatatacaaa gttaaactaa cacaacataa ccacgtggaa 60 aaacagcgaa agcactttac cacattatgt ctcgtgtcag aaatactttg gaaaagatca 120 gagacccaca agtacagtcc agcatttgtg aagctgctta tcaacatgtt cgacctgtac 180 ttaaagaatc tctaatcaat tgtccttacg cgcttaacga ttatgaagca gacacccttg 240 agaatcttgg tgtcacaatt aacccccatg caatccaaac acacacacat gccgcagcca 300 aagtagtcga aaatcgtatg cttgaaattg ttggacatca cttgcctaaa gatgaaaaag 360 taactttcat cttcctcaaa cgtagcaagc tgcgttacat gagaagagct gctgtgcata 420 aagatgtctt tgtcaatcat aacattgaac caaaagactt cttcaggtat gatgaagagt 480 ccacatcaac cagcttttcc gttgatacga gaatcgcata catttcagat tctctacact 540 ttatggaacc tgctgatgtg actcacttgt ttgaccgttg ccaaaacctt aaaacattga 600 tggcaactgt tgtactacct gtggaagcta tacacagaca gacatctcta ttccctgcga 660 tttactccat taactacaat gaagaaggct ttgagtatat cccaggatca cacggtggtg 720 gggcatattt ccacaaatat gaaactctag aatggctcaa atactctaga ttcattggac 780 atgatccatt gactggttta aaatacacca ttacgattca aatggtggag agtcttggtg 840 ccaaccacct tttcctcttc caaagaggaa actttgagac gccgctatac aggacgtttc 900 aaaagaatag ttttgtgaca ttcccaaata tattccatcc ccgacacgtc aatgccacaa 960 aacctatgcc tagatcaagg gccatacagc tgtacttata tgtgaaatca gtaaataaag 1020 ttacgcaaag agatatattt gccaaggtta gacaactgat ttccactgct gagctagaat 1080 tgtatgaccc tgatgaactc acgcatgttg taaattattt cacatatgtg tcacaactgt 1140 catctatcaa tgattatgac aacatgctca aatccagttt cttcaaaaaa ctggttgcac 1200 ccatgcaaca cgactggagg tgcatgattg gattcttccg gggaaagagt gacttcaatc 1260 aactgctcac agctcttcaa tggaaagatt tttcctatac tattaagact gaagagcttg 1320 taattactac acacactgct ataggacaag caataagcaa tgcagctacc acatataaag 1380 aaagaaagca gctgactcaa ttggtcaaaa aaggtacaat atccttagca gattttgaac 1440 agagagaacc tgaaataact tacactgagt ttgagcctga aactaggccc caagtggact 1500 gcgttactaa ttataataat gcagttaaaa atttaggtct ttctgcactt gatgaacagc 1560 ctcaatgttc atcttctagc agtcatctac cctgcaatga aatatcctta gcaatgactg 1620 atgacgacaa tgctgcggcc attcatgaaa ttgaatctct attgtctgaa ccgataatag 1680 ctcctcaact tccagcattg ccacacaaga catgggccag ttatgcttca gacacttcat 1740 ccatgaagaa ccgtgagatt gagaacataa ttgctgagct tgaaatctca cggaaggaaa 1800 ataatgtgca gcaaactact catgattacc atgcagtttc tgacacagct cagagctccg 1860 gagatctccc atggaaagca tggattccac ttctgaatgc acacggcttc aagggagacc 1920 aacttcaata cagtccggac ggcaaagcga ttcagccaat ccaggacatc aacaacaaaa 1980 caccaagatc tgagtaccca tccagcattc ctgcagatct tgtgaataca ctgcgaaaca 2040 ttaaaagagc agtgtatgcc attcctatta gccatcgaag ggcaagtgct tacagctctg 2100 atatcaaaaa caataggacc ggcaaattac tctgttccca atcaaaagaa tggagggaaa 2160 gttttgcttt caaaatgcaa catgaagaca tcgttaaatc tggagtagtc attcacggct 2220 gtggcggctc tggaaaatca caagcattac aaaactttcc cagaactctt ggcgactcta 2280 atgactgctg cacagtggtt gtgccaactg ttgaactcag aaatgattgg gtgaacaaat 2340 tgtgtaagct acccatggaa cacattaaaa catttgaaaa agcaatgatt caaccaggat 2400 tcccagttgt tatatttgat gactacacta aattgccacc tggttacatt gaagcctatt 2460 tgttccacca tgccaacact gaacttttca ttcttactgg agactcgcgg caaagtgtat 2520 atcatgagtc caacaatgaa gcatacattg cctcattaga tgaagccgtc gcttattatg 2580 ctaactactg tggattttac ctaaatgcta cacacagaaa tgttcgcagt ttggccaata 2640 agctaggtgt ttacagtgag aaagaaggtc acctcaaaat tacctttgcc tcaaatgctc 2700 tacaaaagtg caaagtgcca attttggtgc cctctcaaat gaagaagagt gctatgcaag 2760 acatagggca caaagccatg acctacgctg ggtgtcaagg gcttactgca ccgagagtcc 2820 aaattttgct tgacaaccac acacaacact gctcagacag ggtgctgtac acttgtctct 2880 ccagagctgt ggattccatc cactttatca atacaggccc aaacaattct gaattttggg 2940 acaagcttga ggcaacacca tacctcaaag catttattga tacttacaga gatgagaaaa 3000 cagaaatgct caattctaag cctgctgatg acagtcccgc tgagcctgaa gctccattga 3060 ctcactttcc agtgtcaaac ggcaataact tggaaaagtt agcttcagcg cttcctgaaa 3120 aatttgcaag agagttatat gataaacacc atggatattc taatacaatc caaactgaaa 3180 atccagtggt gcaacttttc cagcatcaac aagccaaaga tgaaacactt ttctgggcaa 3240 caatagaagc tagactttct attacaactc cggaagccaa cttacgagaa tttgtgctaa 3300 agaaagatgt tggagatatc ttgtttttca attaccacaa tgtcatgtgc ttacctgccg 3360 acccagtgga tttcgagcca agaacatggg aaatatgtgc tgctgaagtt aaaaatacat 3420 acttagccaa accaatggct aacttgatca atgctgccag cagacaatct cctgatttcg 3480 acgctaacaa aatttccctg ttcctaaaat ctcaatgggt caagaaagtg gaaaaattag 3540 gtgctgtcaa gtcaaagcct ggccagacca ttgcagcttt catgcaacaa acagtgatgt 3600 tgtatgggac catggccaga tacctcagaa agatgagaca aagatttcaa ccaaaacata 3660 ttttcatcaa ttgtgaaaca acaactgata atctgaacca atttgttaaa caaggttgga 3720 actttaacag aacagctcag acaaatgatt tcacagcttt tgaccaatca caagatggtg 3780 caatgcttca atttgaagtc atgaaggcaa aattcttcaa tatccctgcc gacatcattg 3840 aaggatacat caacatcaaa ttgaacgcca aaatttttct tggcacattg tccattatga 3900 ggttgtctgg tgaaggtcca acttttgatg ccaacacaga atgttcgata gcatatactg 3960 ctacaagata ccatcttgat tctacagtca aacaggttta tgctggagat gatatggcat 4020 tagatggagt tgtccaagaa aaaccctctt ttaaaaaact acagaaccag cttaaactca 4080 cctcaaagac actatttcca aaacaggtta aaggtgatta tgctgaattc tgtggttgga 4140 ctttcactcc tggtggtatc attaaaaacc ctttgaaaat gcatgcttcc attatgttgc 4200 aagaggcaat cggcaattta cacaccgctg ccagatcata tgccattgac atgaagcatt 4260 cataccaaat gggtgatgag ctgcacaatt acttaacacc agatgaagct gaacaacact 4320 tccttgctgt tcggaagttg cacaagttac accaaggaga agcaatgaga cttggtgaaa 4380 atagccctcc aaaagcaaca cattgagggg ttaagttttc cccagttcga aatggaaaga 4440 tcaactctga ttaatttact tcaattgcac cacttcgagc caaaactcag tgttgaagga 4500 atcatagttg tgcacggaat tgcaggcact gggaaaacca ctttacttag gactttattt 4560 tctgcttacc ctagcttagt tataggttca cctaggcctt gctatttaga taaacaaaac 4620 aaaatttcac aagtttgctt atcttgcttt cccaataccc attgtgatat tgtcgatgag 4680 tatcatttgc tagaaagttt tccagaacca aaattggcta tctttggtga cccctgtcaa 4740 tgcacataca ttgagagact tagagtccca cattacactt ccttcagaac tcatagattt 4800 ggaaagtcaa ctgctgagat tttgaacaaa ctgtttgacc ttaatatagt ctcagttaag 4860 aaagaagacg acatcattga attctttaac ccttttgaag ttgaccccac tgagcatatc 4920 tctgcctctg aagaagaagt cttggacttt gtttctgacc aagtggtgac cactagctca 4980 gaggaactag caggacttga gtttgcagaa acaactttct actgcacaac attggccgca 5040 gctgttgctg aaaatcctgc taagactttc atctctctga ctagacacac caacaaactc 5100 accattgggg aactaaatgc caggtctaac tcctagagct gacctcactg acacatacaa 5160 aatcattgcc attgctttct tgttgtcagc ttgcatttac ttccaaaata gccactacca 5220 acctgttgct ggagacaact tgcaccgttt gccttttggt ggacaatatc aagacggcac 5280 caaaaagata tcttattttc cacaacagca gtcatacttt cattctggaa acaaattaaa 5340 tgtcctcata cttatcttca ttctcacatt gggtattgtc ctcaccaata aatttagttt 5400 tagctttagt cgtactactc accagcattc ttgctataac acacattcag caaccaacaa 5460 tacacaacca ttgtcaggtc accattgacg gtgctgcaat agtcataaca aattgtgaga 5520 acacaccaga agtgcttaaa gcaatcaact tctccccttg gaacgggtta agttttccta 5580 aatttgaaaa ttaatattga gtgttcacaa aaatcaactt caataaacaa tcatgcctga 5640 cacaacacct gttgctgcca cttcaagtgc accacccaca gccaaagatg ctggtgctaa 5700 agctccttct gacttctcaa atcccaatac agctcctagt ctcagtgatt tgaagaaagt 5760 caagtatgtc tccaccgtga cctccgtggc cacaccagct gaaattgaag ccctaggcaa 5820 aatcttcacc gctatgggcc ttgccgccaa cgagactggt ccggccatgt gggatctagc 5880 tcgtgcatat gctgatgtgc agagttctaa atcggcacag ctgattggag ctaccccttc 5940 caaccctgca ctatcacgcc gagcccttgc tgctcagttt gatcgaatca atataacccc 6000 caggcaattt tgcatgtact ttgccaaagt tgtttggaac atacttctcg acagcaacat 6060 tccaccagca aattgggcca aacttggtta ccaagaagat acaaaatttg ctgcatttga 6120 cttcttcgat ggagtcacca accctgccag cctgcagcct gctgatggtc ttatcaggca 6180 gccaaatgag aaagaactag ctgctcactc cgtagctaag tacggcgcct tggctaggca 6240 aaagatctcc acaggtaatt atattaccac acttggagaa gtcacacgtg gacacatggg 6300 aggagctaac accatgtacg cgatagacgc accccctgaa ctttaaacac tcgaaactta 6360 atcagagtgg ggttttctac agtttatttt cctaattatt tctttgaaat aaaaaaaaaa 6420 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa 6450 //