ID AJ586803; SV 1; linear; genomic RNA; STD; VRL; 6617 BP. XX AC AJ586803; XX DT 20-FEB-2004 (Rel. 78, Created) DT 24-JUN-2004 (Rel. 80, Last updated, Version 2) XX DE Tobacco rattle virus Hel gene, Rep gene, P1a gene and P1b gene and 3' UTR, DE genomic RNA XX KW cysteine-rich protein; Hel gene; helicase; movement protein; P1a gene; KW P1b gene; Rep gene; replicase. XX OS Tobacco rattle virus OC Viruses; Riboviria; Virgaviridae; Tobravirus. XX RN [1] RP 1-6617 RA Robinson D.J.; RT ; RL Submitted (21-OCT-2003) to the INSDC. RL Robinson D.J., Host-Pathogen Coevolution, Scottish Crop Research Institute, RL Invergowrie, Dundee, DD2 5DA, UNITED KINGDOM. XX RN [2] RX DOI; 10.1111/j.1439-0434.2004.00842.x. RX AGRICOLA; IND43682243. RA Robinson D.J.; RT "Identification and nucleotide sequence of a Tobacco rattle virus RNA-1 RT variant that causes Spraing disease in potoao cv. Bintje"; RL J. Phytopathol. 152(5):286-290(2004). XX DR MD5; 690ca36ab6693523e766cdf416092248. DR RFAM; RF01101; TLS-PK6. XX FH Key Location/Qualifiers FH FT source 1..6617 FT /organism="Tobacco rattle virus" FT /segment="RNA1" FT /strain="PpO85" FT /mol_type="genomic RNA" FT /country="Netherlands" FT /isolation_source="Paratrichodorus pachydermus vector FT nematode" FT /db_xref="taxon:12295" FT CDS 29..5152 FT /transl_except=(pos:3590..3592,aa:OTHER) FT /gene="Rep" FT /product="replicase" FT /db_xref="GOA:Q70BW7" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q70BW7" FT /protein_id="CAE52518.1" FT /translation="MANGNFKLSQLLNVDEMSAEQRSHFFDLMLTKPDCEIGQMMQRVV FT VDKVDDMIKERKTKDPVIVHEVLSQKEQNKLMEIYPEFNIVFKDDKNMVHGFAAAERKL FT QALLLLDRVPALQEVDDIGGQWSFWVTRGEKRIHSCCPNLDIRDDQREISRQIFLTAIG FT DQARSGKRQMSENELWMYDQFRENITAPNAVRCNNTYQGCTCRGFSDGKKKGAQYAIAL FT HSLYDFKLKDLMATMVEKKTRVVHAAMLFAPESMLVDEGPLPSVDGYYMKKNGKIYFGF FT EKDPSFSYIHDWEEYKKYLLGKPVSYQGNVFYFEPWQVRGDTMLFSIYRIAGVPRRSLS FT SQEYYRRIYISRWENMVVVPIFDLVESTRELVKKDLFVEKQFMDKCLDYIARLSDQQLT FT ISNVKSYLSSNNWVLFINGAAVKNKQSVDSRDLQLLAQTLLVKEQVARPVMRELREAIL FT TETKPITSLTDVLGLVSRKLWKQFANKIAVGGFVGMVGTLIGFYPKKVLTWAKDTPNGP FT ELSYEDSHKTKVIVFLSVVYAIGGITLMRRDIRDGLVKKLCDMFDIKRGAHVLDVENPC FT RYYEINDFFSSLYSASESGETVLPDLSEVKAKSDKLLQQKKEIADEFLSAKFSNYSGSS FT VRTSPPSVVGSSRSGLGLLLEDSNVLTQARVGVSKKVDDEEIMEQFLSGLIDTEAELDE FT IVSAFTAECERGETSGTKVLCKPLTPPGFENVLPTVKPLANKGKTAKRVDYFQVMGGER FT LPKRPVVSGDNSVDARREFLYYLDAERVAQNDEIMSLYRDYSRGVIRTGGQNYPHGLGV FT WDVEMKNWCIRPVVTEHAYVFQPDKRMNDWSGYLEVAVWERGMLINNFAVERMSDYVIV FT CDQTYLCNNRLILDNLSALDLGPVNCSFELVDGVPGCGKSTMIVNSANPCVDVVLSTGR FT AATDDLIERFASKGFPCKLKRRVKTVDSFLMHCVDGSLTGDVLHFDEALMAHAGMVYFC FT AQIAGAKRCICQGDQNQISFKPRVSQVNLRFSSLVGKFDIVTEKRETYRSPADVAAVLN FT KYYTGDVRTHNATANSMTVRKIVSKEQVSLKPGAQYITFLQSEKKELINLLALRKVAAK FT VSTVHESQGETFKDVVLVRTKPTDDSIARGREYLIVALSRHTQSLVYETVKEDDVSKEI FT RESAALTKAALARFFVTETVLXRFRSRFDVFRHHEGPCAVPDSGTITDLEMWYDALFPG FT NSIRDSSLDGYLVATTDCNLRLDNVTIKSGNWKDKFAENETFLKPVIRTAMPDKRKTTQ FT LESLLALQKRNQAAPDLQENVHATVLIEETMKKLKSVVYDVGKIRADPIVNRAQMERWW FT RNQSTAVQAKVVADVRELHEIDYSSYMYMIKSDVKPKNDLTPQFEYSALQTVVYHEKLI FT NSLFGPIFKEINERKLDAMQPHFVFNTRMTSSDLNDRVKFLNTEAAYDFVEIDMSKFDK FT SANRFHLQLQLEIYRLFGLDEWAAFLWEVSHTQTTVRDIQNGMMAHIWYQQKSGDADTY FT NANSDRTLCALLSELPLEKAVMVTYGGDDSLIAFPRGTQFVDPCPKLATKWNFECKIFK FT YDVPMFCGKFLLKTSSCYEFVPDPVKVLTKLGKKSIKDVQHLAEIYISLNDSNRALGNY FT MVVSKLSESVSDRYLYKGDSVHALCALWKHIKSFTALCTLFRDENDKELNPAQVDWKKA FT QRAVSNFYDW" FT CDS 29..3592 FT /gene="Hel" FT /product="helicase" FT /db_xref="GOA:Q70BW6" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q70BW6" FT /protein_id="CAE52519.1" FT /translation="MANGNFKLSQLLNVDEMSAEQRSHFFDLMLTKPDCEIGQMMQRVV FT VDKVDDMIKERKTKDPVIVHEVLSQKEQNKLMEIYPEFNIVFKDDKNMVHGFAAAERKL FT QALLLLDRVPALQEVDDIGGQWSFWVTRGEKRIHSCCPNLDIRDDQREISRQIFLTAIG FT DQARSGKRQMSENELWMYDQFRENITAPNAVRCNNTYQGCTCRGFSDGKKKGAQYAIAL FT HSLYDFKLKDLMATMVEKKTRVVHAAMLFAPESMLVDEGPLPSVDGYYMKKNGKIYFGF FT EKDPSFSYIHDWEEYKKYLLGKPVSYQGNVFYFEPWQVRGDTMLFSIYRIAGVPRRSLS FT SQEYYRRIYISRWENMVVVPIFDLVESTRELVKKDLFVEKQFMDKCLDYIARLSDQQLT FT ISNVKSYLSSNNWVLFINGAAVKNKQSVDSRDLQLLAQTLLVKEQVARPVMRELREAIL FT TETKPITSLTDVLGLVSRKLWKQFANKIAVGGFVGMVGTLIGFYPKKVLTWAKDTPNGP FT ELSYEDSHKTKVIVFLSVVYAIGGITLMRRDIRDGLVKKLCDMFDIKRGAHVLDVENPC FT RYYEINDFFSSLYSASESGETVLPDLSEVKAKSDKLLQQKKEIADEFLSAKFSNYSGSS FT VRTSPPSVVGSSRSGLGLLLEDSNVLTQARVGVSKKVDDEEIMEQFLSGLIDTEAELDE FT IVSAFTAECERGETSGTKVLCKPLTPPGFENVLPTVKPLANKGKTAKRVDYFQVMGGER FT LPKRPVVSGDNSVDARREFLYYLDAERVAQNDEIMSLYRDYSRGVIRTGGQNYPHGLGV FT WDVEMKNWCIRPVVTEHAYVFQPDKRMNDWSGYLEVAVWERGMLINNFAVERMSDYVIV FT CDQTYLCNNRLILDNLSALDLGPVNCSFELVDGVPGCGKSTMIVNSANPCVDVVLSTGR FT AATDDLIERFASKGFPCKLKRRVKTVDSFLMHCVDGSLTGDVLHFDEALMAHAGMVYFC FT AQIAGAKRCICQGDQNQISFKPRVSQVNLRFSSLVGKFDIVTEKRETYRSPADVAAVLN FT KYYTGDVRTHNATANSMTVRKIVSKEQVSLKPGAQYITFLQSEKKELINLLALRKVAAK FT VSTVHESQGETFKDVVLVRTKPTDDSIARGREYLIVALSRHTQSLVYETVKEDDVSKEI FT RESAALTKAALARFFVTETVL" FT CDS 5154..5912 FT /gene="P1a" FT /product="movement protein" FT /db_xref="GOA:Q70BW5" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/TrEMBL:Q70BW5" FT /protein_id="CAE52520.1" FT /translation="MEDKSLATLKKKTFEVSKFSNLGAIELFMDGRRKRPKYFHRRRET FT VLNHVGGKMSEHKLDVFDQRDYKMIKSYAFLKIVGVQLVVTSHLPADTPGFIQIELLDS FT RLTERRKKGMTIQRFKARACDNCSVAQYKVEYSISTQENVLDVWRVGCISEGVPVCDGT FT YPFSIEVSLIWVATDSTRRLNVEELNSSDYIEGDFTDQEVFGEFMSLKQVEMKTIEAKY FT DGHYRPATTRPKSLLSSEDVKRASKKKNSS" FT CDS 5937..6362 FT /gene="P1b" FT /product="cysteine-rich protein" FT /db_xref="GOA:Q70BW4" FT /db_xref="InterPro:IPR007968" FT /db_xref="UniProtKB/TrEMBL:Q70BW4" FT /protein_id="CAE52521.1" FT /translation="MTCVLKGCVNEVTVLGHETCSIGHANKLRKQVADMVGVTRRCAEN FT NCGWFVCIIINDFTFDVYNCCGRSHLEKCRKRVEARNREIWKQIRRNQAENMSAAAKKS FT HNSKTSKKKFKGGREFGTPKRFLRDDIPLGIDQLFAF" FT 3'UTR 6363..6617 XX SQ Sequence 6617 BP; 1963 A; 1103 C; 1694 G; 1857 T; 0 other; atattttgta aagttatata caaatacaat ggcgaacggt aacttcaaat tgtctcaatt 60 gcttaatgtg gacgagatgt ccgctgagca gaggagtcat ttctttgact tgatgctgac 120 taaacctgat tgtgagatcg ggcaaatgat gcaaagagtt gttgttgata aagtcgatga 180 catgattaaa gaaagaaaga ctaaagatcc agtgattgtt catgaggttc tttctcagaa 240 agaacagaac aagttgatgg aaatttatcc tgaattcaat atcgtgttca aagacgacaa 300 aaacatggtt catgggtttg cagctgctga acgaaaacta caagctttgt tgcttttaga 360 tagagttccc gcactgcaag aggtggatga cattggtggt caatggtcgt tctgggtaac 420 tagaggtgag aagaggattc attcctgttg tccaaatcta gatattcggg atgaccagag 480 agaaatttct cgacaaatat ttcttactgc tatcggtgat caagccagaa gtggtaaaag 540 acagatgtcg gagaatgagt tgtggatgta tgatcaattt cgtgaaaata ttactgcacc 600 taacgctgtt aggtgcaata atacatatca gggttgtaca tgtagagggt tttctgatgg 660 taagaagaaa ggcgcgcagt acgcgatagc tcttcacagc ctgtacgact tcaagttgaa 720 agacttgatg gctactatgg ttgagaagaa aactagagtg gttcatgctg ctatgctttt 780 cgctcctgag agtatgttag tggacgaagg tccattacct tctgttgatg gttactacat 840 gaagaagaac gggaagatct atttcggttt cgagaaagat ccttcctttt cttacattca 900 tgactgggaa gagtacaaga aatatctact ggggaagcca gtgagttacc aagggaatgt 960 gttctacttc gaaccgtggc aggtgagagg agacacaatg cttttctcga tctacaggat 1020 agctggagtt ccgaggcggt ctctatcatc gcaagagtac taccgaagaa tatatatcag 1080 tagatgggaa aacatggttg ttgtcccaat tttcgatctg gttgaatcga cgagagagtt 1140 ggtcaagaaa gacctgtttg tggagaaaca gtttatggac aagtgtttgg attacatagc 1200 taggttgtct gaccagcagc tgaccataag caatgttaaa tcatacttga gttcaaacaa 1260 ttgggtctta ttcataaacg gggcggccgt gaagaacaag caaagtgtag attctcgaga 1320 tttacagttg ttggctcaaa ctttgctagt gaaggaacaa gtggcgagac ctgtcatgag 1380 agagttgcgt gaagcaattc tgactgagac gaaaccaatc acatcattaa ctgacgtgtt 1440 gggtctagtc tcaagaaaac tgtggaaaca gttcgctaac aagatcgcag tcggtggatt 1500 cgttggcatg gttggtactc taatcggatt ttatccaaag aaagtgctga cttgggcgaa 1560 ggacacacca aatggtccag aactaagtta cgaggactcg cacaaaacca aggtgatagt 1620 atttctgagt gttgtgtatg ccattggagg aatcacgctt atgcgtcgag acatccgaga 1680 tggactggta aaaaaactat gtgatatgtt tgatattaaa cggggggccc atgtcttaga 1740 cgttgagaat ccgtgccgct attacgaaat caatgatttc tttagcagtc tgtattcggc 1800 atctgagtcc ggtgagaccg ttctaccaga tttatccgag gtaaaagcca agtctgataa 1860 gctactgcag cagaagaaag aaatcgctga tgagtttctc agtgcaaaat tttcgaacta 1920 ttctggcagt tcggtgagaa cttccccacc atcggtggtc ggttcatctc gaagtggact 1980 gggtttgctg ttggaagaca gtaacgtgct aacccaagct agagttggag tttcaaaaaa 2040 ggtagacgat gaggagatca tggagcagtt tctgagtggt cttattgaca ctgaagcgga 2100 gttagacgag atcgtttcgg cctttacggc tgaatgtgaa agaggggaaa caagcggtac 2160 aaaagtattg tgtaaacctt taacgccacc aggatttgag aacgtgttac caactgtcaa 2220 acctttggct aacaaaggta aaacggccaa acgtgtcgat tacttccaag tgatgggagg 2280 tgagagatta ccaaaaaggc cggttgtcag tggagacaat tctgtggacg ctagaagaga 2340 atttctgtac tacttggatg cagagagagt tgctcaaaat gacgaaatta tgtctctgta 2400 tcgtgactat tcaagaggag ttattcgaac tggaggtcag aactacccgc acggactggg 2460 agtgtgggat gtggagatga agaactggtg tatacgtcca gtggtcactg aacatgctta 2520 tgtgttccaa ccagacaaac gtatgaatga ttggtcggga tacttagaag tggctgtctg 2580 ggaacgtggt atgttgatca acaacttcgc ggttgaacga atgagtgatt atgtcatagt 2640 atgcgatcag acataccttt gcaataacag gttgatcttg gacaatttaa gtgccctaga 2700 tctaggacca gttaactgtt cttttgaact agttgatggt gtacctggtt gtggtaagtc 2760 gacaatgatt gtcaactcag ctaatccgtg tgtcgatgtg gttctctcta ctgggagagc 2820 agcaaccgac gacttaatcg agagattcgc gagcaagggt ttcccatgca aattgaagag 2880 gagagtgaaa acagttgatt cttttttgat gcactgtgtc gatggttctt taaccggaga 2940 tgtattgcat tttgatgaag ctctcatggc tcatgctggc atggtgtact tttgcgctca 3000 gattgctggt gctaaacgat gtatctgtca aggggatcag aaccaaattt ctttcaagcc 3060 tagggtgtct caagttaact tgaggttctc tagtctggtc ggaaagtttg acattgttac 3120 agaaaagaga gaaacttaca gaagtccagc ggatgtggct gccgtactga ataagtacta 3180 tactggagat gttagaacac acaacgcgac tgctaattcg atgacagtga ggaaaattgt 3240 gtcaaaagaa caggtttctt tgaaacctgg cgctcagtac ataacttttc ttcagtctga 3300 gaaaaaggag ttgataaatc tgttggcatt gaggaaagtg gcggccaagg tgagcacagt 3360 acacgaatca caaggagaga cattcaaaga cgtagtccta gttaggacga aacctacgga 3420 tgattcaatt gccagaggta gggaatacct aatcgtagca ctgtcgcgtc acacacaatc 3480 gcttgtgtat gaaactgtga aggaggacga tgtaagtaaa gaaatcagag aaagtgccgc 3540 gcttacgaaa gcggctttgg caagattttt tgttactgag accgtcttat gacggtttcg 3600 gtctaggttt gatgtcttca gacatcacga agggccttgc gccgttccag attcaggtac 3660 gattacggac ttggagatgt ggtacgacgc tttgtttccg ggaaattcga taagagactc 3720 aagcctagac gggtacttgg tggcaacgac tgattgcaat ttgcggttag acaatgttac 3780 aatcaaaagt gggaactgga aagacaagtt cgctgaaaat gagacatttc tgaaaccggt 3840 tattcgtact gcgatgcctg acaaaaggaa gactactcag ttggagagtt tgttagcatt 3900 gcagaaacgg aaccaagcgg cacctgatct acaagaaaat gtgcacgcaa cagttctaat 3960 cgaagagacg atgaagaagt tgaaatctgt tgtctatgat gtgggaaaaa ttcgggctga 4020 tcctatcgtc aatagggctc aaatggagag atggtggagg aatcaaagca cggcagttca 4080 agctaaggta gtagcagatg tgagagagtt acatgagata gactattcgt cttacatgta 4140 tatgattaaa tctgatgtga aacctaagaa tgatttgaca ccgcaatttg agtactcggc 4200 tctgcagacc gttgtgtatc acgagaagtt gattaactcg ttgttcggtc caattttcaa 4260 ggaaattaat gagcgcaagt tggatgctat gcaaccacat tttgtgttca atacaagaat 4320 gacatcgagt gatttgaacg atcgagtgaa gttcttaaat acagaagcgg cttacgactt 4380 tgttgagata gatatgtcta aattcgacaa gtcggcaaat cgcttccatt tacaactgca 4440 gttggagatc tacaggttgt ttggactaga tgagtgggcg gcctttcttt gggaggtgtc 4500 gcacactcaa actactgtga gagatattca aaacggtatg atggcacaca tctggtacca 4560 acaaaagagt ggagatgctg atacttataa tgcaaattcg gataggacgc tatgtgcgct 4620 tttatctgag ttaccattgg agaaagcagt catggttaca tatggaggag atgattcatt 4680 gattgcgttt cctagaggaa cacaattcgt tgacccatgt ccaaagttgg ctactaagtg 4740 gaattttgag tgcaagattt ttaagtatga tgtcccaatg ttttgtggaa agttcttact 4800 taagacgtca tcgtgctatg agttcgtacc agatccggtg aaagttctga cgaagttggg 4860 gaaaaagagt ataaaggatg tgcaacattt agccgagatt tacatatcgc tgaatgattc 4920 caatagagct cttgggaact acatggtggt gtctaaattg tccgagtctg tttcagatcg 4980 gtatttgtac aaaggtgatt ctgttcatgc gctttgtgcg ctatggaagc atattaagag 5040 ttttacagct ctgtgtacat tattccgaga cgaaaacgat aaggaattga acccggctca 5100 ggttgattgg aagaaggcac agagggctgt gtcaaacttt tacgactggt gagatggaag 5160 acaagtcatt ggctactttg aagaagaaga cttttgaagt ttcaaaattt tcaaatctgg 5220 gagccattga attgtttatg gacggtagga ggaagagacc gaaatatttc cacaggagaa 5280 gggaaactgt cctaaatcat gttggaggaa agatgagtga acacaagtta gacgttttcg 5340 accaaagaga ctataaaatg attaaatctt acgcgtttct aaagatagtg ggtgtacaac 5400 tagttgtaac atcacatcta cctgcagata cacctgggtt tattcaaatc gagctgttgg 5460 attcgagact tactgagaga agaaagaaag gaatgactat tcagagattc aaagctcgag 5520 cttgcgataa ctgttcagtt gcgcagtaca aggttgaata cagtatttct acacaggaga 5580 atgtacttga tgtctggagg gtgggttgta tttctgaagg cgttcctgtc tgtgacggta 5640 catacccttt cagtatcgaa gtgtcgctaa tttgggttgc tactgattcg accaggcgtc 5700 tcaatgtgga agaactgaat agttcggatt acattgaagg cgattttacc gatcaagagg 5760 ttttcggtga gttcatgtct ttgaaacaag tggagatgaa gacgattgag gcgaagtatg 5820 atggtcatta caggccagct actactagac ccaaatcatt gttatcgagt gaagatgtta 5880 agagagcgtc taagaagaaa aactcgtctt aatgcataaa gaaatttatt gtcaatatga 5940 cgtgtgtact caagggttgt gtgaatgaag tcactgttct tggtcacgag acgtgtagta 6000 tcggtcatgc taacaaattg cgaaagcaag ttgctgacat ggttggtgtc acacgtaggt 6060 gtgcggaaaa taattgtgga tggtttgtct gtattattat caatgatttt acttttgatg 6120 tgtataattg ttgtggccgt agtcaccttg aaaagtgtcg taaacgtgtt gaagcaagaa 6180 atcgggagat ctggaaacag attcgacgaa accaagctga aaacatgtct gcggcagcta 6240 aaaagtctca taattcaaag acctctaaga agaaattcaa agggggcaga gagtttggga 6300 caccaaaaag atttttaaga gatgatattc ctttgggaat tgatcaattg tttgcttttt 6360 gattttattt taaattgtta tctgtttctg tgtatagact gtttgagatt ggcgtttggc 6420 cgactcattg tcttaccata ggggaacgga ctttgtttgt gttgttattt tatttgtatt 6480 ttattaaaat tctcaatgat ctgaaaaagc ctcgcggcta agagattatt ggggggtgag 6540 taagtacttt taaagtgatg atggttacaa aggcaaaagg ggtaaaaccc ctcgcctacg 6600 taagcgttat tacgccc 6617 //