ID   AJ585522; SV 1; linear; genomic RNA; STD; VRL; 2184 BP.
XX
AC   AJ585522;
XX
DT   13-OCT-2004 (Rel. 81, Created)
DT   13-OCT-2004 (Rel. 81, Last updated, Version 1)
XX
DE   Cucumber mosaic virus 3a gene for movement protein and cp gene for coat
DE   protein, genomic RNA, strain Twa
XX
KW   3a gene; coat protein; cp gene; movement protein.
XX
OS   Cucumber mosaic virus (cucumber mosaic cucumovirus)
OC   Viruses; Riboviria; Bromoviridae; Cucumovirus.
XX
RN   [1]
RP   1-2184
RA   Mitter N.;
RT   ;
RL   Submitted (13-OCT-2003) to the INSDC.
RL   Mitter N., AFFS Biotechnology, Qld Department of Primary Industries, QABC,
RL   Qld Bioscience Precinct, 306 Carmody Rd, St Lucia, Brisbane, Queensland,
RL   4072, AUSTRALIA.
XX
RN   [2]
RA   Sulistyowati E., Mitter N., Bastiaan-Net S., Roossinck M.J., Dietzgen R.G.;
RT   "Biological characterisation and RNA 3 sequence analysis of six Australian
RT   strains of Cucumber mosaic virus";
RL   Unpublished.
XX
DR   MD5; 54989f6230f620b79980f4e0ca0edf19.
DR   RFAM; RF01084; TLS-PK3.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2184
FT                   /organism="Cucumber mosaic virus"
FT                   /segment="RNA3"
FT                   /strain="Twa"
FT                   /mol_type="genomic RNA"
FT                   /country="Australia"
FT                   /isolation_source="capsicum"
FT                   /db_xref="taxon:12305"
FT   CDS             90..929
FT                   /gene="3a"
FT                   /product="movement protein"
FT                   /db_xref="InterPro:IPR000603"
FT                   /db_xref="UniProtKB/TrEMBL:Q5ZPK0"
FT                   /protein_id="CAE51927.1"
FT                   /translation="MAFQGTSRTLTQQSSAATSDDLQKILFSPEAIKKMATECDLGRHH
FT                   WMRADNAISVRPLVPEVTHGRIASFFKSGYDVGELCSKGYMSVPQVLCAVTRTVSTDAE
FT                   GSLRIYLADLGDKELSPIDGQCVSLHNHDLPALVSFQPTYDCPMETVGNRKRCFAVVIE
FT                   RHGYIGYTGTTASVCSNWQARFSSKNNNYTHIAAGKTLVLPFNRLAEQTTSSAVARLLK
FT                   SQLNNIESSQYLLTNAKINQNARSESEELNVESPPAAIGRSSASRSEAFRPQVVNGL"
FT   CDS             1227..1883
FT                   /gene="cp"
FT                   /product="coat protein"
FT                   /db_xref="GOA:Q5ZPJ9"
FT                   /db_xref="InterPro:IPR000247"
FT                   /db_xref="InterPro:IPR023800"
FT                   /db_xref="InterPro:IPR037137"
FT                   /db_xref="UniProtKB/TrEMBL:Q5ZPJ9"
FT                   /protein_id="CAE51928.1"
FT                   /translation="MDKSESTSAGRNRRRRPRRGSRSASSSSDANFRVLSQQLSRLNKT
FT                   LAAGRPTINHPTFVGSERCRPGYTFTSITLKPPKIDRGSYYGKRLLLPDSVMEYDKKLV
FT                   SRIQIRVNPLPKFDSTVWVTVRKVPASSDLSVAAISAMFADGASPVLVYQYAASGVQAN
FT                   NKLLYDLSAMRADIGDMRKYAVLVYSKDDALETDELVLHVDIEHQRIPTSGVLPV"
XX
SQ   Sequence 2184 BP; 514 A; 516 C; 518 G; 636 T; 0 other;
     gtaatcttac cactgtgtgt gtgtgtgtgt gtgtatcgag tcgttgtcca cacattttat        60
     tttgtacagt gtgttagatt tcccgaggca tggctttcca aggtaccagt aggactttaa       120
     ctcaacagtc ctcagcggct acgtctgacg atcttcaaaa gatattattt agccctgaag       180
     ccattaagaa aatggctact gagtgtgacc taggccggca tcactggatg cgcgctgata       240
     atgctatttc agtccggccc ctcgttcccg aagtaaccca cggtcgtatt gcttccttct       300
     ttaagtctgg atatgatgtt ggtgaattgt gctcaaaagg atacatgagc gtccctcagg       360
     tgttatgtgc tgttactcga acggtttcca ctgatgctga agggtctctg agaatttacc       420
     tagctgatct aggcgacaag gagttatctc ccatagatgg gcaatgcgtt tcgttacata       480
     accatgatct tcccgctttg gtgtctttcc aaccgacgta tgattgtcct atggagacag       540
     ttgggaatcg taagcggtgt tttgctgtcg ttatcgaaag acatggttac attgggtata       600
     ccggcaccac agctagcgtg tgtagtaatt ggcaagcaag gttttcatct aagaataaca       660
     actacactca tatcgcagct gggaagactc tagtactgcc tttcaacaga ttagctgagc       720
     aaacaacatc gtcagctgtc gctcgcctgt tgaagtcgca attgaacaac attgaatctt       780
     cgcaatatct gttaacgaac gcgaagatca atcaaaatgc gcgcagtgag tccgaggaat       840
     taaatgttga aagccctccc gccgcaatcg ggagatcttc cgcgtcccgc tccgaagcct       900
     tcagaccgca ggtggttaac ggtctttagc actttggtgc gtattagcat ataagtattt       960
     gtgagtctgt acataatact atagctatag tgtcctgtgt gagttgatac agtagacatc      1020
     tgtgacgcga tgccgtgttg agaagggaac acatctggtt ttagtaagcc tacatcatag      1080
     ttttgaggtt caattcctct tactccctgt tgagcccctt actttctcat ggatgcttct      1140
     ccgcgagatt gcgttattgt ctactgacta tatagagagt gtgtgtgctg tgttttctct      1200
     tttgtgtcgt agtattgagt cgagtcatgg acaaatctga atcaaccagt gctggtcgta      1260
     accgtcgacg tcgtccgcgt cgtggttccc gctccgcctc ctcctcttcg gatgctaact      1320
     ttagagtctt gtcgcaacag ctttcgcgac ttaataagac gttagcagct ggtcgtccaa      1380
     ctattaacca cccaaccttt gtagggagtg aacgctgtag acctgggtac acgttcacat      1440
     ctattaccct aaagccacca aaaatagacc gtgggtctta ttatggtaaa aggttgttat      1500
     tacctgattc agtcatggaa tatgataaga agcttgtttc gcgcattcaa attcgagtta      1560
     atcctttgcc gaaatttgat tctaccgtgt gggtgacagt tcgtaaagtt cctgcctcct      1620
     cggacttatc cgttgccgcc atctctgcta tgttcgcgga cggagcctca ccggtactgg      1680
     tttatcagta tgctgcatct ggagtccaag ctaacaacaa attgttgtat gatctttcgg      1740
     cgatgcgcgc tgatataggt gacatgagaa agtacgccgt cctcgtgtat tcaaaagacg      1800
     atgcactcga gacggacgag ctagtacttc atgttgacat cgagcaccaa cgcattccca      1860
     catctggggt gctcccagtc tgattccgtg ttcccagaac cctccctccg atttctgtgg      1920
     cgggagctga gttggcagtt ctactataaa ctgtctgaag tcactaaacg ttttacggtg      1980
     aacgggttgt ccatccagct tacggctaaa atggtcagtc gtggagaaat ccacgccagc      2040
     agatttacaa atctctgagg cgcctttgaa accatctcct aggtttcttc ggaaggactt      2100
     cggtccgtgt acctctagta caacgtgcta gtttcagggt acgggtgccc ccccactttc      2160
     gtgggggcct ccaacaggag acca                                             2184
//