ID AJ581528; SV 1; linear; genomic RNA; STD; VRL; 4607 BP. XX AC AJ581528; XX DT 17-JUN-2004 (Rel. 80, Created) DT 17-JUN-2004 (Rel. 80, Last updated, Version 1) XX DE Tuberose mild mottle virus partial ORF1 for polyprotein, genomic RNA XX KW 6K2 protein; CI protein; coat protein; NIa protease; NIb polymerase; KW polyprotein; VPg protein. XX OS Tuberose mild mottle virus OC Viruses; Riboviria; Potyviridae; Potyvirus. XX RN [1] RP 1-4607 RA Adams M.J.; RT ; RL Submitted (27-AUG-2003) to the INSDC. RL Adams M.J., Plant Pathogen Interactions Division, Rothamsted Research, RL Harpenden, Herts AL5 2JQ, UNITED KINGDOM. XX RN [2] RX DOI; 10.1007/s00705-003-0289-0. RX PUBMED; 15168198. RA Lin L., Zheng H.Y., Chen J., Chen J., Zhang Q.Y., Zhao M.F., Antoniw J.F., RA Adams M.J.; RT "A new potyvirus from tuberose ( Polianthes tuberosa) in China"; RL Arch. Virol. 149(6):1107-1116(2004). XX DR MD5; 254c8763ebaed92d36213ddcd1f88f0f. XX FH Key Location/Qualifiers FH FT source 1..4607 FT /organism="Tuberose mild mottle virus" FT /isolate="Hangzhou" FT /mol_type="genomic RNA" FT /country="China:Zhejiang: Hangzhou" FT /db_xref="taxon:244050" FT CDS <1..4458 FT /codon_start=1 FT /transl_table=1 FT /product="polyprotein" FT /note="ORF1" FT /db_xref="GOA:Q6H9M2" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001592" FT /db_xref="InterPro:IPR001730" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR013648" FT /db_xref="UniProtKB/TrEMBL:Q6H9M2" FT /protein_id="CAE46329.1" FT /translation="LFKNYRLRESDVCLKKTAIPTGFHRRWIKAGDYRRMGVSIDVEDE FT VGVPFFVRGIPDRLHAKLWEVANEFAQDSCLGRLTMDHATKIAYTLQTDIHSLPRTIQI FT IEKLLEEEMVKHTYYQNLNGEFCSSGSISLSGILSTIKRHYTKDHSAENIKKLKSVHAQ FT LLEFQNLNVDASVPELLQSFGALKLVHHESCNSVSEKLGLKGRWNKELMTRDLVVSASV FT GIGAAIMLYYWFKGEVESPVHHQGFGKRQRQKLRFRRASDARMGYELDADPRTLEQYFG FT DAYTKKEKKSGRARTTHGKTRRFVNFYGFDPTEYALVRYVDTLTGITYDDSPMSGVEHM FT QEYLLKIRNQLRDEDEISAQSMMSNQRIEAYFIKHGAKDMIKVDLTPHNPLLICNKTNN FT IAKFPEREFEMRQSSKAEVLDKANLPPPNSKDLHVEHESLSLHKGLRDYNPIARSLCYL FT TNKSDGGSISFYGVGFGPLIITNRHLFQRNNGELLVRTHHGEFTARNTTQLQVHPVEDH FT ELVLILMPKDFPPFSSKLIFRHPLKGERASMVGTLFQERSLSSTVSEASVIFPHEGSKF FT WSHHISTKAGYCGLPLVSLTDGAILGLHSISSNDFTVNYFASVPHDFKEKWLQTQENLA FT WAKHWLYNPNEISWGSLRLTERPPSGLFKTDKLISDLESIPVHEQGSTQEHWVAEALHG FT NLKAVAFCPNKLVSKHIVKGKCALFDLYLRENESARNFFQPLMGSHGKSVLSKTAFLKD FT LLKYANPIYVGEVQTDRFDEAVNAMIQLLHKIGFGECSYITEAQAIIQSLNLNAATGTL FT YSGKKKDFFKDFTDEAYEEIVRESCKRLFLGDMGLWNGSLKAELRPMEKVLANKTRTFT FT AAPIETLLGGKVCVDDFNNQFYDLHIVGPWTVGMTKFYKGWDRLLKELPDGWIYCDADG FT SQFDSSLSPYLINAVTLIRLHFMEHWDVGEIMLKNLYTEIVYTPIAAPDGTVVKKFKGN FT NSGQPSTVVDNSLMVCVTMLYALNCAGVDLTRYQEFLKFFVNGDDLMIAVQPNMEHLLD FT GLQASFKELGLNYEFTSRTKNKSELWFMSHQGLFRDGVYIPKLEVERIVSILEWDRSSE FT PEHRLEAICASMIEAWGHDELLYQIRLFYAWVLEMEPYKSLAACGKAPYISELALKKLY FT LDENFQQRELELYLQYRTERYLAEPMDEEVEVHHQSDEPEQPIPPTGKGKQSSEIPHST FT PESLNAGKSNPNNSTFSGSDRGRDKDVNAGTVGLKRVPRLTKMQTKMQVPEVDGMITLD FT LDHLLTYLPKQVHLHNTRATNEQYKEWYTQVKTAYGVSDDEMRIILNGFTVWCIENGTS FT PNINGRWTMMDGTEQVEFDLKPMVEFAKPTLRQIMAHHSEVAETYIVMRNTIEPYMPRY FT GLQRNLTDRSLAQYAFDFYEVTSRTPARAREAHFQMKAAALRGKQSRLFGLDGNVGSVE FT EITERHTTDDVNRDMHTMLGVRNA" FT mat_peptide <1..576 FT /product="CI protein" FT /note="ORF1" FT mat_peptide 577..735 FT /product="6K2 protein" FT /note="ORF1" FT mat_peptide 736..1311 FT /product="VPg protein" FT /note="ORF1" FT mat_peptide 1312..2040 FT /product="NIa protease" FT /note="ORF1" FT mat_peptide 2041..3603 FT /product="NIb polymerase" FT /note="ORF1" FT mat_peptide 3604..4455 FT /product="coat protein" FT /note="ORF1" FT 3'UTR 4459..4607 FT /note="ORF1" XX SQ Sequence 4607 BP; 1357 A; 966 C; 1122 G; 1162 T; 0 other; ctatttaaga attatcgttt gcgtgagtcg gacgtttgtt tgaagaaaac tgcaattcca 60 actggtttcc atagacgttg gattaaggcg ggtgattacc gacgtatggg tgtgagcata 120 gatgtggagg atgaggtcgg agtgcctttc tttgttagag ggatcccaga tagactccac 180 gccaaactgt gggaagtggc caatgaattt gcgcaagact cgtgtctggg acgcctaacc 240 atggatcacg caacgaagat tgcgtatacg ctccagacag atatccactc gctgccacgc 300 actatacaga tcattgagaa actgttagaa gaggagatgg tgaagcatac ttattaccaa 360 aacctgaatg gagagttttg ctccagtgga agcatatcgc tatcaggcat cttgagcacc 420 atcaagcggc attacactaa agaccacagc gcggagaaca ttaagaaact caaatcagtg 480 catgcccaac tactcgagtt ccagaatctc aatgttgatg cgagtgttcc ggagttgttg 540 caatcattcg gagctttaaa gttagtacat catgagagtt gcaatagcgt tagcgaaaaa 600 ctcggactca aaggccgatg gaataaggaa cttatgacgc gcgatctagt cgtgtcggct 660 agtgttggta ttggagcagc tatcatgctg tattactggt tcaaagggga agttgaaagt 720 cctgtgcacc atcaaggatt tggcaagcgg caaaggcaaa agctacgctt taggcgggca 780 agtgacgcaa gaatgggtta tgaattagat gccgatcccc gaactttgga acaatatttt 840 ggcgacgcat acactaagaa ggagaagaag agcgggcgtg caaggaccac acatggcaag 900 acacgtcgat tcgtgaattt ttacggtttc gatccaacgg agtatgcact agtgcgttat 960 gttgacacat tgactggtat aacatacgat gactcaccta tgtctggtgt cgaacatatg 1020 caggaatatc ttctcaagat acggaaccaa ctgcgcgatg aagatgaaat ctcagcacaa 1080 agcatgatga gcaaccaacg aattgaagcc tacttcataa agcatggtgc taaagacatg 1140 ataaaagtgg atctgacgcc acacaaccct cttttaatct gtaataaaac aaacaacatt 1200 gcgaagtttc ccgagaggga gtttgaaatg agacaatcat ccaaagcgga agtccttgac 1260 aaagccaatt tgccccctcc aaattccaaa gatttgcacg tggagcatga gagcctaagt 1320 ttacacaagg gcctacgtga ctacaatcca atcgctcgtt cattgtgtta tctcaccaac 1380 aagtcggatg gtggttctat cagcttctat ggtgttgggt ttggtccact aatcatcacg 1440 aataggcatc tctttcaaag gaataatggg gagttgttgg tccgtacgca ccatggcgag 1500 ttcactgcga ggaatacgac tcaattacaa gtacatccag tcgaggacca tgaactagtt 1560 cttatactta tgccaaagga ttttcctcct ttctcaagta agctcatctt ccgacaccct 1620 ttaaaggggg agcgtgcaag tatggttggc acactgtttc aagagcgtag tctttcgagt 1680 acggtgtctg aagctagtgt aatatttcct cacgagggca gcaagttctg gagccaccac 1740 atctcaacga aagcaggtta ttgtggtctc cctcttgtca gcctgacaga tggtgcgatt 1800 cttgggttac atagtatatc atccaacgat tttactgtaa actactttgc atccgtacca 1860 cacgacttca aggagaagtg gctacaaacg caggagaacc ttgcttgggc gaagcactgg 1920 ttatacaatc caaacgaaat tagttggggt tcactgcgtc tcactgaaag gccaccatct 1980 ggactcttta aaacggataa gttaatatca gacttggagt caatccctgt gcatgagcaa 2040 ggatccaccc aagaacactg ggtagctgaa gctttacacg gtaatctcaa agcagttgcc 2100 ttctgtccta ataagctagt ttcgaagcac atagtcaaag gcaagtgtgc tctcttcgac 2160 ttgtacctgc gcgagaatga atctgcaagg aatttcttcc aacctctaat gggctcacat 2220 gggaagagtg tgctaagcaa aaccgccttt ctcaaggact tgctgaagta cgcaaaccct 2280 atatatgttg gtgaagttca aacggaccga ttcgacgaag cggtcaacgc gatgatccag 2340 ctcttacaca aaattggatt tggcgagtgc tcatacataa ctgaagcgca agcaataatt 2400 cagtcactta atcttaatgc agcaactggc actttataca gtggcaagaa aaaggacttc 2460 tttaaagatt ttacagacga ggcatatgaa gagattgtgc gggagagttg taagcggcta 2520 ttccttgggg acatgggctt gtggaacggc tctctgaaag ctgaattacg cccgatggaa 2580 aaggtcctgg caaataaaac acgaactttc actgcagcac caattgaaac attattaggt 2640 gggaaggttt gcgtcgacga ctttaataac cagttctacg atctacatat tgtgggtccc 2700 tggacagttg gaatgactaa gttctataaa gggtgggatc gattactaaa agaactgccg 2760 gacggatgga tctattgtga cgcagatggt tcccagtttg atagttcgct ctccccatat 2820 ctaattaatg cagtgacact gatcaggttg cacttcatgg aacattggga tgtgggcgaa 2880 attatgctga agaacttgta cacagaaatt gtgtacacgc caattgcagc acctgatgga 2940 acggtcgtta agaagtttaa aggaaataac agcggacagc catcgactgt cgttgacaac 3000 tcgctcatgg tgtgtgtaac catgttgtac gccttgaatt gcgctggagt ggatttaacg 3060 cgttatcaag aattcttaaa attcttcgtt aatggagatg acttaatgat tgcagtgcaa 3120 ccaaacatgg aacatctctt ggacggtttg caagcatcat tcaaagagct tggcctaaac 3180 tatgagttca cgtctagaac aaagaataag tcggaactgt ggtttatgtc acaccaaggg 3240 ctttttagag atggcgtcta cattccaaaa cttgaggttg agcgcattgt gtctatatta 3300 gaatgggacc ggagttcgga acctgagcac cgtcttgaag caatttgtgc atcaatgatt 3360 gaagcgtggg ggcatgatga gcttttgtat caaatacgat tgttttacgc atgggtgctg 3420 gagatggagc cgtataaatc gttggctgct tgtggtaagg caccgtatat ttcagagtta 3480 gctctcaaga aattgtacct cgatgaaaac tttcagcaac gtgagctaga gctatatctg 3540 cagtacagga cagagaggta cctagccgag ccaatggatg aagaggttga ggttcatcat 3600 cagtccgacg aaccggaaca gcccatacca ccaactggaa aaggaaaaca atcctcggaa 3660 attccacatt ccactcctga aagtttgaac gctgggaaga gtaacccgaa caactctaca 3720 ttttcaggat ctgaccgcgg gagggataag gacgtgaacg ccggcacagt tgggctcaag 3780 cgagtgccaa gactcacaaa aatgcaaact aaaatgcagg taccagaagt ggacgggatg 3840 atcacgttgg atttagacca cttactgaca tacctaccaa agcaagttca tctccacaac 3900 actcgagcaa ctaatgaaca atataaggag tggtatacgc aagtaaagac tgcgtacgga 3960 gtgtctgatg atgagatgag aattatactg aatggtttca ccgtctggtg cattgagaat 4020 gggacttcac caaacataaa tggcaggtgg accatgatgg atggaaccga gcaagtcgag 4080 ttcgacttga aaccaatggt ggaatttgca aagccaacat tgcgccaaat tatggcacat 4140 cacagtgaag tcgctgaaac ttacattgtg atgagaaaca ccattgaacc gtacatgcca 4200 aggtacggac ttcagcgaaa tctgaccgac aggagcctcg cccagtacgc atttgacttc 4260 tatgaagtca catcgcgtac tccagctaga gcacgagaag ctcatttcca gatgaaagca 4320 gctgccctac gcggcaaaca aagccgattg tttgggttgg atgggaatgt cggttcggtt 4380 gaggagatca cagaacgtca caccactgat gacgttaata gagacatgca cactatgttg 4440 ggagtgcgaa atgcttaatg tcctatcttt tatctgtgtt ccctcgtgga catattatta 4500 ctaagatgaa tatgtttcgt attagttttc agtatgcctc taactcattt tgccagcgca 4560 cgtagtgagg ttttacctcg gttgttctgt cactgtgagg gtgaaac 4607 //