ID AJ577359; SV 1; linear; genomic RNA; STD; VRL; 5970 BP. XX AC AJ577359; XX DT 15-JUL-2004 (Rel. 80, Created) DT 15-JUL-2004 (Rel. 80, Last updated, Version 1) XX DE Strawberry mild yellow edge virus, genomic RNA XX KW coat protein cp gene; replicase; TGBp1 gene; TGBp2 gene; TGBp3 gene; KW triple gene block protein 1; triple gene block protein 2; KW triple gene block protein 3. XX OS Strawberry mild yellow edge virus OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus. XX RN [1] RP 1-5970 RA Thompson J.R.; RT ; RL Submitted (15-JUL-2003) to the INSDC. RL Thompson J.R., Virology, Biologische Bundesanstalt, Schwabenheimer Strasse RL 101, D-69221, GERMANY. XX RN [2] RA Thompson J., Jelkmann W.; RT "Strain diversity and conserved genome elements in Strawberry mild yellow RT edge virus."; RL Unpublished. XX DR MD5; 97a03a827203ddbd5c6e40a9ef0d93e9. XX CC genomic organisation (ie location of start and stop codons)is the same for CC already submitted isolate MY18 except there is no ORF6 CC CC Related sequence: D12517 XX FH Key Location/Qualifiers FH FT source 1..5970 FT /organism="Strawberry mild yellow edge virus" FT /isolate="D74" FT /mol_type="genomic RNA" FT /db_xref="taxon:12187" FT CDS 79..4050 FT /product="putative replicase" FT /note="ORF1" FT /db_xref="GOA:Q6EWR9" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q6EWR9" FT /protein_id="CAE12227.1" FT /translation="MATRVASVFSSLTDVGIKAALQDEAYKRIKSNLREAEIINPYSVD FT ARGAEALEELAIITNPHSIRLHTHAAAKSIENQMLHIVGHALPKEPVTFLFLKRGKLRY FT LSRGRIKDIFQNQEIEPRDVARYEHKTIVQKSLLLNTRVAYISDTLHFLRPRYIIDLFS FT QNVFLDVLYATVVLPVEASFKHPSQNPAIYTINYNYGGFQYLPGNHGGGAYSHEFEDLD FT WLKYGRFIYRWVDYRTDPISGKRVGTPKELVVTCQLVESLGANHLFIFKRGDLKTPRVR FT TFAKDKSVTFPDLFYPEEENANFPVDAELATKLFLYVKTLKTVTSQDVHGKLRQLLRSD FT ELTKFSPMQLTHMVNYFMVVAHLDSCNDYSMLLGSDVWTQLTAPIQAKLRKLTEFFKGK FT SSFGKFCAALKWKTATYSLEVKDYVETRRDSFEPHPLDNLPDSDDRDVNYDTDVDTDEA FT DEKPAPNAQASTPVPDPTPPASPAAPGDAEYVHCWSAWDTVIRKHGFKGNQAQFDDEGN FT LITPISEIKSLPKDSPRCAPELLKSLQEIARTPTMVDICSKRSAAFGSDVKNGRIGMIL FT KKQPNDWRLSFAAKCEHTSRKVHACVIHGAGGSGKSQRLQDWMRTLKKNSRECTVILPT FT AELRADWVNKVPKQSLDTFKTWEKGLVQPPNRVVILDDYGKLPAGYPEALCANYPNIEL FT LILTGDSRQSVHNEHNKQAATASLESNVEFWTRYCRFYVNATHRNVKRLANALGVYGER FT DEPLKVTCSSHVYEGWPVLAPGLLKTGNLAECGRRAFTYAGCQGLTTPRVQILLDNDTP FT LCSQRVMYTALSRAVNEIHFVNTGPSGDDFWTKLDCTPFLKTFLELSREIEVPEAKCQE FT TAPAELTVKTHFPVENPNMVLEPYVEKMAEKFDRELYSKEYGYSNAIQTEDPVIQLFPH FT QQAKDDTLMWATIDQRLAITTRPDNEAEFALKKDIGDLLFINYHRAMKLPKNPIPFDRD FT LWQSCKNEVQKTYLSKDISSIVNGVARQDPDFPINEIKLFLKSQWVKKVDKLGMVVKPG FT QTIASFAQAPVMLYGTMARYMRRMREIHQPSNIFINCEKTPADLDEWAKANWNFEGLAH FT SNDFTAFDQSQDGAMLQFEVIKAKFHNVPSDIINSYVELKTNAKVFLGVLKIMRLSGEG FT PTFDANTECSIAYHHTKYWVDPDVAQVYAGDDSAQDRTPVPRPSFNKIKDRLGLVSKPL FT THRQVPGDYATFCGWIITPKGVIKDPLKLYASLQLAIRRGKSHEVALSYAHDAGLAYRL FT GDDLHSVLTFDEAHAHQCTVRDLVKLNKVDVLRPIWALD" FT regulatory 4052..4078 FT /note="subgenomic" FT /regulatory_class="promoter" FT CDS 4100..4789 FT /transl_except=(pos:4100..4102,aa:Met) FT /gene="TGBp1" FT /product="triple gene block protein 1" FT /db_xref="GOA:Q6EWR8" FT /db_xref="InterPro:IPR027351" FT /db_xref="UniProtKB/TrEMBL:Q6EWR8" FT /protein_id="CAE12228.1" FT /translation="MVEYTKRLLLERGFERTNRPITGPIVVHAVAGAGKSSLINTVSLT FT FQLICWTTLPEEKASFNCLHLRHLDGPAFPGAFIDEYQLADTDLSEAAFLFGDPLQYPG FT PAAQVPHFVKFFSHRCGLDSASLIRELGIAFEASKLDSVQHLDPYSSDPEGTILAFEPE FT VQAALASHSLEFLCLDEFRGKQWPVCTLYVSTKHLCDLDRPSVYVALTRHYERLLIMSF FT DAADPSA" FT CDS 4767..5093 FT /gene="TGBp2" FT /product="triple gene block protein 2" FT /db_xref="GOA:Q6EWR7" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:Q6EWR7" FT /protein_id="CAE12229.1" FT /translation="MPLTPPPDHSITYRILAVGLCSCCAIYAATRSTLPHTGDNLHSLP FT YGGKYSDGTKSICYSGPGPTPDIPTHLPALLVLALVIAIYASSRLDFSVNYRCSCRVHN FT RPGQ" FT CDS 5020..5247 FT /gene="TGBp3" FT /product="triple gene block protein 3" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/TrEMBL:Q6EWR6" FT /protein_id="CAE12230.1" FT /translation="MRALDLTLALITAAVVGCTIALVSNSGCYVHFDGRSATTTCPPGP FT WVESIANGLYTAGLARPHPESECERRQSSW" FT CDS 5117..5845 FT /gene="cp" FT /product="coat protein" FT /db_xref="GOA:Q6EWR5" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:Q6EWR5" FT /protein_id="CAE12231.1" FT /translation="MGDQPRPPAPPAPGSNPLPMGSTPPVLPGRTPNPNVNVANQVGDP FT FRVLTPEELAAPIAAASNKVATREQIIQIVADLNALGFVGDPALGLFDLAFHCYDIGSS FT PSAQPVGASPFGCSRMQVAAVVRNHCTLRQLCMFYAPSVWNKAVKDNRPPGNWANLQFT FT PETKFAAFDFFDGVLNPASQQVALWRQPTPQEIYASATHKDVATYRAASKAHDRISNST FT LLTKGASRSTPPALMPGPDA" XX SQ Sequence 5970 BP; 1446 A; 1747 C; 1424 G; 1353 T; 0 other; gaaaacataa ccaacccact ctagaccagg ccctcctgac gtacacaaca actggccgcc 60 gcagtgcact gtacctcgat ggcgactaga gtagcgagcg tattctcctc cctcacggac 120 gttggaatta aagctgcttt gcaagacgaa gcgtacaaac gcataaaatc caacctccgg 180 gaagccgaaa tcatcaaccc ctactcggtt gatgcccgag gcgctgaagc cttggaagaa 240 cttgccatta tcacgaatcc ccactccatc cgactgcaca ctcacgctgc agcaaagagc 300 atcgaaaacc agatgctcca cattgtgggc catgcgttac cgaaggaacc cgtcacgttc 360 cttttcctga aacgcggcaa gttgcggtac ctctctcgcg gaagaatcaa ggacatcttc 420 cagaaccaag agattgagcc gcgtgacgta gctaggtacg agcataagac cattgtacag 480 aagtctttgc tcttaaatac tagagtagca tacattagtg acactttaca tttccttagg 540 cctaggtata taatagattt attttcacaa aatgttttcc tagatgtact atatgccacc 600 gtggtgctac ctgtagaagc tagtttcaag cacccgtctc agaatccggc catatacact 660 atcaattaca attatggcgg attccaatac ttgcctggga accatggagg gggagcctac 720 tcacatgagt tcgaggatct ggactggctc aaatacggca ggttcatcta cagatgggtg 780 gactaccgca ctgacccgat ctctggcaag agagttggca ctcccaagga gttggtggtg 840 acgtgtcaac tcgtcgagtc cctcggcgcc aatcacctct tcatcttcaa gaggggggac 900 ttgaaaacac ctcgcgtccg gacctttgca aaggacaaga gcgtgacctt cccggacctg 960 ttctatccgg aggaagaaaa tgccaacttc cctgtggacg ccgaactggc caccaagctc 1020 ttcctgtacg tcaagaccct caagacggtc accagtcagg acgtccacgg gaaactacgc 1080 cagctgctga ggagtgatga gctcaccaaa tttagtccta tgcaactgac acacatggtc 1140 aactacttca tggtagttgc ccacctggac agttgcaacg actactcgat gcttctcggc 1200 agcgacgttt ggacccaatt gactgccccg attcaagcga aactcaggaa gctgactgag 1260 tttttcaagg gtaagtcctc tttcggcaaa ttctgtgccg cccttaagtg gaagactgcc 1320 acttattcct tggaggtcaa ggactacgtt gagacgcgta gggactcttt tgaacctcat 1380 ccactggaca accttccaga ctccgacgac cgggacgtaa attacgatac cgacgtcgac 1440 acggatgagg cggacgagaa acctgcgcct aatgcccagg cctccactcc tgttcctgac 1500 cccactccac ccgcaagccc agcggcacca ggtgacgcag aatacgtcca ctgctggtcc 1560 gcttgggaca ctgtcatcag gaaacatggt ttcaagggca accaggccca atttgatgat 1620 gaagggaatc tcatcacccc tatctcggag attaagtctc tgccgaaaga ttccccgagg 1680 tgcgctcccg aacttcttaa aagtctgcaa gagatcgcgc gcacccccac catggttgac 1740 atatgctcaa agagaagtgc tgcttttggg tccgatgtaa aaaacggaag aattggcatg 1800 atcctcaaga agcaacccaa cgactggcgc ctttcctttg ccgcgaagtg tgaacataca 1860 tcaaggaaag tgcacgcctg cgttatccat ggtgccggag gctcaggcaa atcacaacgc 1920 ctccaagact ggatgaggac cctgaagaaa aattccaggg agtgcaccgt cattcttccc 1980 actgcagagc tacgtgctga ttgggtgaac aaagtcccga agcagagctt ggacactttc 2040 aaaacgtggg agaaaggcct tgtccagcca ccgaacaggg tggtcatcct cgatgactac 2100 ggaaagttgc ctgcagggta ccctgaagcc ctctgcgcta actaccctaa cattgagctc 2160 ctaatcctga caggagactc aaggcagtcc gtgcacaacg agcacaacaa acaagcagcg 2220 actgcctccc ttgaatccaa cgtggagttt tggacccgat attgccgctt ctacgtgaac 2280 gccacgcatc gcaatgtcaa gcgactagcg aatgctctgg gtgtttacgg cgaacgcgat 2340 gagcccctca aagtgacgtg cagcagccat gtctacgagg gttggccggt cctcgcccct 2400 ggcctactaa agaccggcaa tctcgccgag tgcggccgcc gtgccttcac gtatgccggc 2460 tgccaggggc tcaccacgcc gagggtgcaa attttgctgg acaacgacac gcccctgtgc 2520 tcacagaggg tcatgtacac tgcactctcc cgcgccgtga atgagatcca cttcgtcaac 2580 actggcccat ctggcgatga tttttggacg aagttagatt gcaccccctt cctgaagacc 2640 ttcttggagc tttcaagaga aatcgaggta ccggaagcta agtgccagga aactgccccc 2700 gccgaactga ccgtgaagac acactttccg gtcgaaaatc caaacatggt ccttgagccg 2760 tacgtcgaga agatggccga aaagtttgac agagagctat actcgaaaga gtacggctat 2820 tctaacgcca tccagactga agacccggtc atccagctct tcccacacca gcaggcgaag 2880 gatgacaccc tgatgtgggc cacaattgac caaaggctgg ccatcacaac cagaccggat 2940 aatgaggcgg aattcgctct caagaaagac atcggggacc tgctcttcat caattaccac 3000 cgcgccatga aactgccaaa gaaccctatc cctttcgaca gggacttgtg gcagtcgtgc 3060 aagaatgagg tccaaaagac ctatctatcc aaggacatca gctccattgt caacggtgtc 3120 gccaggcaag acccagactt cccgattaat gagatcaaac tctttctgaa aagtcaatgg 3180 gttaagaaag tggataagct tggcatggta gtgaagccag gtcaaaccat tgcctctttt 3240 gctcaagcgc ccgtgatgct gtacggcact atggcacgct acatgaggcg catgcgggag 3300 atccaccagc cctccaatat cttcatcaac tgtgagaaga ctcccgccga cctggatgaa 3360 tgggccaaag caaactggaa ttttgaaggc ctcgcccatt ccaacgactt tacggctttc 3420 gaccaatctc aagatggtgc catgctgcag ttcgaggtca tcaaagccaa gttccacaat 3480 gtcccaagcg acattatcaa cagctacgtg gagctgaaga ccaatgccaa ggttttcttg 3540 ggcgtgctca aaatcatgag actgtccgga gaggggccta ctttcgatgc caacacagag 3600 tgttcaattg cctaccacca caccaaatac tgggttgacc ccgatgtggc acaggtgtac 3660 gcaggcgatg actctgcaca ggataggacc ccagtcccga ggcccagctt caacaagatc 3720 aaggatcgcc tcggactggt ctctaagcct ctcacccacc gacaggtacc gggcgactat 3780 gccacctttt gcggctggat catcactccg aaaggggtaa tcaaagatcc actcaagctc 3840 tatgcttcct tgcagttggc catccgccgc ggcaagtccc atgaggtggc tctgtcctac 3900 gcccatgacg caggcctcgc ttatcgcctc ggtgatgacc tgcactcagt tctaactttc 3960 gatgaggcgc atgctcacca gtgtactgtt agagacctgg tgaagctaaa taaagtagac 4020 gtgttaaggc ccatttgggc cctagattag gggttaagtt accattctct cgaagttcaa 4080 actggagcgt cccaatacaa tcgttgagta caccaagcgt ctgctcttgg aacgcggctt 4140 tgagagaact aatcgtccta tcactggccc tattgttgta catgctgtcg ccggtgccgg 4200 gaagtctagt ttaattaaca ctgtgtccct cactttccag ctcatctgtt ggaccacgtt 4260 gccagaggag aaagcctcct tcaactgcct tcatctccgc catcttgacg gacccgcctt 4320 cccgggagcc ttcatagacg agtatcagct tgctgacacc gacctatcgg aagctgcgtt 4380 tctcttcgga gacccgctac agtacccggg acctgctgcc caagttccgc acttcgtgaa 4440 gttcttctcc caccgctgtg ggttggactc ggcttcgcta attcgcgagc taggcatagc 4500 ctttgaagcc agtaagctag attcagtgca acacctggac ccctactcat ctgatcccga 4560 aggtaccatt ctcgcttttg agcctgaggt acaagccgct cttgcgagcc actccttgga 4620 attcctctgt ttagacgaat ttcgaggcaa gcagtggccg gtttgcacat tgtacgtgtc 4680 cactaaacat ctctgtgact tagacagacc ctctgtctat gtcgcattaa ccagacacta 4740 cgagcgcctt ctgatcatga gtttcgatgc cgctgacccc tccgcctgac catagcataa 4800 cctataggat tttagctgtt ggcctctgct cttgctgcgc catttacgcg gccactagat 4860 ctaccctgcc ccacaccggt gacaacctgc attcgctgcc ctacggaggg aagtattccg 4920 acgggaccaa gagcatctgc tactcgggcc ctggacctac ccctgacatc cctacacatc 4980 tgcctgcttt gctagtcttg gcgttagtga tcgcaatcta tgcgagctct cgacttgact 5040 ttagcgttaa ttaccgctgc agttgtaggg tgcacaatcg ccctggtcag taattccggt 5100 tgttacgtgc acttcgatgg gagatcagcc acgaccacct gcccccccgg cccctgggtc 5160 gaatccattg ccaatgggct ctacaccgcc ggtcttgccc ggccgcaccc cgaatccgaa 5220 tgtgaacgtc gccaatcaag ttggtgaccc tttccgggtg ctcactcctg aggaacttgc 5280 tgctccgatc gctgctgcca gtaataaggt ggccactcgt gagcaaataa tccaaattgt 5340 cgctgatctg aacgccctgg gctttgtcgg ggatcctgct ctgggtctct tcgacttagc 5400 cttccactgc tacgacattg gttcctcgcc ctcggcacaa cctgttggcg cttccccttt 5460 tggctgctcg cgcatgcaag ttgccgccgt tgtccgaaat cattgcacgc ttcgccagct 5520 ctgcatgttc tacgccccaa gcgtttggaa caaagcagtt aaggacaatc gtcctcctgg 5580 caattgggcc aatctccagt tcaccccgga gacaaaattt gcagcttttg atttcttcga 5640 cggcgtgctc aatccagcca gccaacaggt cgccctgtgg cgccagccca caccgcaaga 5700 gatttatgcc tcagccaccc ataaggatgt agctacttat cgtgcagcca gtaaggcgca 5760 cgaccgcatt tccaattcca cgctcctgac taaaggagct agtagatcca cgccgcctgc 5820 gcttatgccg ggccccgatg cttaacatcc gtggattagg cttaaaatgg gagtttcttc 5880 tcacttcttc tacccagctc caatgagtgc catgaagtga atatagtact acttaaccgt 5940 actagtatag gtttgttttt ctttttcctt 5970 //