ID AJ575560; SV 1; circular; genomic DNA; STD; VRL; 2800 BP. XX AC AJ575560; XX DT 04-JUL-2003 (Rel. 76, Created) DT 30-JUL-2008 (Rel. 96, Last updated, Version 5) XX DE South African cassava mosaic virus - [ZW] segment A, complete genome XX KW AC1 gene; AC2 gene; AC3 gene; AC4 gene; AC4 protein; AV1 gene; AV2 gene; KW AV2 protein; coat protein; complete genome; replication associated protein; KW replication enhancer; transcritional activator protein. XX OS South African cassava mosaic virus - [ZW] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2800 RA Briddon R.W.; RT ; RL Submitted (03-JUL-2003) to the INSDC. RL Briddon R.W., Department of Disease and Stress Biology, John Innes Centre, RL Colney Lane, Norwich, Norfolk, NR4 7UH, UNITED KINGDOM. XX RN [2] RA Briddon R.W., Robertson I., Markham P.G., Stanley J.; RT "Occurrence of South African cassava mosaic virus (SACMV) in Zimbabwe"; RL New Dis. Rep. 0:0(2003). XX DR MD5; e89c6c235e2e5f24f589ea19a6f21bae. DR EuropePMC; PMC1079959; 15784145. XX FH Key Location/Qualifiers FH FT source 1..2800 FT /organism="South African cassava mosaic virus - [ZW]" FT /segment="A" FT /host="cassava" FT /mol_type="genomic DNA" FT /country="Zimbabwe" FT /isolation_source="host leaf" FT /clone="TV3" FT /db_xref="taxon:269274" FT CDS 174..524 FT /gene="AV2" FT /product="AV2 protein" FT /db_xref="GOA:Q7TAT6" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:Q7TAT6" FT /protein_id="CAE01420.1" FT /translation="MWDPLVNEFPESVHGFRCMLAIKYLQAVEETYEPNTLGHDLVRDL FT ICVLRARDYVEATRRYNHFHSRLEGATKAELRQPVQQPCCCPHCPRHKQAPIMDVTAHV FT SKAQNVQNVQKS" FT CDS 334..1110 FT /gene="AV1" FT /product="coat protein" FT /function="encapsidation" FT /db_xref="GOA:Q7TAT5" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:Q7TAT5" FT /protein_id="CAE01421.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPFSSRAAVPIVQGTNKRRSW FT TLRPMYRKPRMYRMYRSPDVPRGCEGPCKVQSYEQRDDVKHTGAVRCVSDVTRGSGITH FT RVGKRFCVKSIYVLGKIWMDENIKKQNHTNQVMFFLVRDRRPYGTSPMDFGQVFNMFDN FT EPSTATIKNDLRDRFQVLRKFHATVVGGPSGMKEQALIKRFFRVNNHVVYNHQEAAKYE FT NHTENALLLYMACTHASNPVYATLKIRIYFYDAVTN" FT CDS complement(1107..1511) FT /gene="AC3" FT /product="replication enhancer" FT /db_xref="GOA:Q7TAT4" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q7TAT4" FT /protein_id="CAE01422.1" FT /translation="MDSRTGELITAPQAKNGVFTWEITNPLYFEITNHDERPGNMNHDI FT ITLQIRFNHNIRKALGIHKCFLNFKVWTTLRPPTGLFLRVFRYQVLKYLNMIGVISINT FT VLRAVDHVLYDVLLNTFQVTEQHAIKFNLY" FT CDS complement(1252..1866) FT /gene="AC2" FT /product="transcritional activator protein" FT /db_xref="GOA:Q7TAT3" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q7TAT3" FT /protein_id="CAE01423.1" FT /translation="MTSTPTTSSTLKNSWGPRGTGKAIPSTGSRFKLKAAFPLSSSAIQ FT DQQHHIKSFWKRKRTSPLKLGLSRMQPSSPSTSHCSQVPIKVQHRTAKNRALRRRRVDL FT ECGCSFYLHIDCINHGFSHRGTHHCASSKEWRFYLGNNKSPIFRDHQPRREAREHEPRH FT HHTPDTVQPQHQEGIGDSQVFSQLQGLDDLTASDWSFLKSI" FT CDS complement(1568..2647) FT /gene="AC1" FT /product="replication associated protein" FT /function="initiation of rolling-circle replication" FT /db_xref="GOA:Q7TAT2" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q7TAT2" FT /protein_id="CAE01424.1" FT /translation="MPRAGRFSIKAKNYFLTYPKCTLSKEAALDQLRQLQTPTNKLFIK FT ICRELHDNGEPHLHALIQFEGKYNCTNQRFFDLVSPSKSAHFHPNIQGAKSSSDVKSYL FT DKDGDTIQWGEFQIDGRSARGGQQSANDAYAKALNAASKTEALNVIRELAPKDFVLQFH FT NLNSNLDRIFQEPPVPYISPFLSSSFTNVPEELEDWVSENVMGSAARPWRPSSIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPIQIKGGIPTIFLCNPGPTASYKEFLEEEKNQSLKAWAFKNATFITLHEPL FT FSSAHQSPTPHREEQGPQT" FT CDS complement(2200..2496) FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:Q7TAT1" FT /protein_id="CAE01425.1" FT /translation="MTMGNLICMPSFNSRASTIVPTNDSSTSYPLPSQHISIQTFRELN FT PVPTSSPIWTRTETPSNGASFRSTDGLLAADNNPQMTLTPRLLTQQVKRRLLM" XX SQ Sequence 2800 BP; 694 A; 577 C; 728 G; 801 T; 0 other; accggatggc cgcgctcgac aaagcaggtg gaccccatcg gatggccgct cctgtaaaag 60 aaagtggtcc ccgcgcatgt gttgctgtcg gccagtcaaa ttcacgcgtg aaagcctaga 120 tatttgtttc atgtcgttat agacttcgtc gcgaagtagt ggagcgcgtc aacatgtggg 180 atccactggt gaatgagttc cccgagtctg tgcacggttt tcgctgtatg cttgctatta 240 aatatttgca ggccgtggag gaaacctacg agcccaatac cttgggccac gatctagtcc 300 gtgatctcat ttgtgttctc cgagcccgtg attatgtcga agcgacccgc cgatataatc 360 atttccactc ccgcctcgaa ggtgcgacga aggctgaact tcgacagccc gttcagcagc 420 cgtgctgctg tccccattgt ccaaggcaca aacaagcgcc gatcatggac gttacggccc 480 atgtatcgaa agcccagaat gtacagaatg tacagaagtc ctgatgttcc tcgaggatgt 540 gaaggcccat gtaaggtaca gtcgtatgaa cagagagacg atgttaagca caccggtgct 600 gttcgttgtg taagtgatgt tacgcgtggt tcgggtatta ctcatagggt agggaagaga 660 ttttgtgtta agtcaatata tgttttagga aagatctgga tggatgaaaa catcaagaag 720 cagaatcaca ctaatcaggt catgtttttc ttagtgcgtg atagaaggcc ctatggcaca 780 agcccaatgg attttgggca ggtttttaat atgtttgata atgagcccag tacagcgact 840 attaagaatg atttgcgaga taggtttcaa gttttgcgga aattccatgc cactgtggta 900 ggtggtccct cgggcatgaa ggagcaggcg ttgattaaga ggttttttag ggttaacaat 960 cacgtggtgt ataatcatca agaggctgcg aaatatgaga atcatacgga gaatgcgttg 1020 ttgttgtata tggcatgtac gcatgcctct aatcctgtgt atgctacgct gaaaatacgc 1080 atctatttct atgatgcagt tacaaattaa taaaggttga attttattgc atgttgctcc 1140 gtaacttgga aagtgtttag taatacgtcg tacagaacat gatcaacagc tctaagtaca 1200 gtgttaatgg aaataactcc tatcatattt aaatacttga gcacttgata tctaaatact 1260 cttaagaaaa gaccagtcgg aggccgtaag gtcgtccaga ccttgaagtt gagaaaacac 1320 ttgtgaatcc ccaatgcctt cctgatgttg tggttgaacc gtatctggag tgtgatgatg 1380 tcgtggttca tgttccctgg cctctcgtcg tggttggtga tctcgaaata taggggattt 1440 gttatttccc aggtaaaaac gccattcttt gcttgaggcg cagtgatgag ttcccctgtg 1500 cgagaatcca tggttgatgc agtcgatatg gagatagaac gagcagccgc attcgaggtc 1560 taccctccta cgtctgaggg ccctgttctt cgcggtgcgg tgttggactt tgatgggcac 1620 ttgagaacaa tggctcgtgg agggtgatga aggttgcatt cttgaaagcc caagctttaa 1680 gggactggtt cttttcctct tccagaaact ctttatatga tgctgttggt cctggattgc 1740 agaggaagat agtgggaatg ccgcctttaa tttgaatcgg cttcccgtac ttggtattgc 1800 tttgccagtc cctctgggcc cccatgaatt ctttaaagtg cttgaggtag tgggggtcga 1860 cgtcatcaat gacgttgtac catgcgtcgt tgctgtagac ctttggactg agatccagat 1920 gtccacacaa gtagttgtgt ggtcccagag atctggccca catcgtcttc cctgtcctac 1980 tatcgccctc gatgactata ctactcggtc tccatggccg cgcagcggag cccatgacgt 2040 tctcggaaac ccagtcttca agttcctcag gaacattagt gaaagaagaa gaaagaaagg 2100 gagaaatata aggaaccgga ggctcctgaa aaattctatc taaattgcta tttaaattat 2160 gaaactgtaa aacaaaatct tttggggcta gttccctgat tacattaaga gcctccgttt 2220 tacttgctgc gttaagagcc ttggcgtaag cgtcatttgc ggattgttgt ccgccgcgag 2280 cagaccgtcc gtcgatctga aactcgcccc attggatggt gtctccgtcc ttgtccagat 2340 aggacttgac gtcggaactg gatttagctc cctgaatgtt tggatggaaa tgtgctgact 2400 tggaagggga tacgaggtcg aagaatcgtt ggttggtaca attgtacttg ccctcgaatt 2460 gaatgagggc atgcaaatga ggttccccat tgtcatggag ttctctgcat atcttgatga 2520 ataatttatt ggttggggtt tggagttgtc ggagttgatc taatgccgct tctttcgata 2580 gagtgcattt cggatacgtg aggaaataat ttttggcttt gatgctaaaa cgaccagccc 2640 ttggcatttt cgctgtcgta tagcaattgg ggggcactca aagtctgtag caatcggggg 2700 aatggggggc aatttatatg atgcccccca aatggcatat gtgtaatttc tttatgaaat 2760 ttgaatttcg aacgtggcaa gcggccatcc gtttaatatt 2800 //