ID AJ557804; SV 1; linear; genomic RNA; STD; VRL; 4421 BP. XX AC AJ557804; XX DT 30-AUG-2003 (Rel. 77, Created) DT 30-AUG-2003 (Rel. 77, Last updated, Version 1) XX DE Johnsongrass chlorotic stripe mosaic virus ORF1, CP gene, p24 gene and p15 DE gene, genomic RNA XX KW coat protein; CP gene; movement protein; ORF1; p15 gene; p24 gene; KW replicase. XX OS Johnsongrass chlorotic stripe mosaic virus OC Viruses; Riboviria; Tombusviridae; Procedovirinae; Aureusvirus. XX RN [1] RP 1-4421 RA Winter S.; RT ; RL Submitted (28-APR-2003) to the INSDC. RL Winter S., Plant Virus Division, DSMZ, Messeweg 11/12, Braunschweig 38104 , RL GERMANY. XX RN [2] RA Koohi Habibi M., Winter S., Koerbler M., Arbabi M., Izadpanah K.; RT "Johnsongrass chlorotic stripe mosaic virus, a new member of the genus RT Areusvirus"; RL Unpublished. XX DR MD5; 612961433d7c72ee9657b7518fe78091. XX FH Key Location/Qualifiers FH FT source 1..4421 FT /organism="Johnsongrass chlorotic stripe mosaic virus" FT /mol_type="genomic RNA" FT /country="Iran" FT /note="Tombusviridae, genus Aureusvirus" FT /db_xref="taxon:229149" FT CDS 45..2432 FT /transl_table=1 FT /transl_except=(pos:861..863,aa:OTHER) FT /product="replicase" FT /note="contains readthrough stop codon" FT /db_xref="GOA:Q70P86" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013707" FT /db_xref="UniProtKB/TrEMBL:Q70P86" FT /protein_id="CAD89890.1" FT /translation="MDTGILSRRIVTAEVDFQFGSVDYSDPRIVHALCTPGLKERATFG FT RQIVTALKMAVIALTLPVWWPLRLVWRVIIMGVLWVTRFXTRCTNLIKWCVKETRVTVR FT AYWNILNKRARGLVVLGCWASFVLYGPYALLLWLGVIVGYIICVLPSNVRYYIELGQKI FT QDAWDSVEADDTIEAPCNGDILEVRKGRNKFACKLAARAIGRVGLLKATPANALVYQKV FT ILDEMKILNVRFADRVRILPLAVMASLDRPDAVARVEDCVAALTQRGVSLXGGLVRREG FT CDTTTDRTNFDLSAVKGVGPTEGLSVRAGTSAKGDRSWYSFNSLATTYEYVVHNGSLKN FT VCRGLVERVFCVVDKQSGKLVRPPKPKPGVFSAKLGDVGRTVSSIVGYCPHWTRDEFVA FT SYSGPRKASYERAAQTLDTLPLMESDAHLSTFVKAEKINVTLKPDPAPRVIQPRGQRYN FT IEVGRFLKPLEPRLMKAIDKLWGSTTAIKGYTVEKVGSIFADKASRFRHPVYVGLDASR FT FDQHCSADALRWEHSVYNDIFRSPYLAELLEWQVHNRGSAYTHEGKVNYRVEGCRMSGD FT MNTSMGNYLIMSCLIYQFCKEIGLHAELANCGDDCVLFLEKHDLKKLKHLPQWFVKMGY FT TMKVESPVYELEEVEFCQMHPVRTSRGWVMVRRPDTVMTKDCCVVRGGMTTERLRGWLG FT AMRDGGLSLAGDVPVLSAFYSSFPQYRNGETSDYDAPHKFRAGKQYGAITAEARYSFWL FT AFGLTPDDQLAIEGDLSSFKFSLEPQDLVTSMPSLLDYCTRT" FT CDS 45..863 FT /transl_table=1 FT /product="replicase" FT /note="ORF1" FT /db_xref="GOA:Q70P85" FT /db_xref="InterPro:IPR013707" FT /db_xref="UniProtKB/TrEMBL:Q70P85" FT /protein_id="CAD89891.1" FT /translation="MDTGILSRRIVTAEVDFQFGSVDYSDPRIVHALCTPGLKERATFG FT RQIVTALKMAVIALTLPVWWPLRLVWRVIIMGVLWVTRFXTRCTNLIKWCVKETRVTVR FT AYWNILNKRARGLVVLGCWASFVLYGPYALLLWLGVIVGYIICVLPSNVRYYIELGQKI FT QDAWDSVEADDTIEAPCNGDILEVRKGRNKFACKLAARAIGRVGLLKATPANALVYQKV FT ILDEMKILNVRFADRVRILPLAVMASLDRPDAVARVEDCVAALTQRGVSL" FT CDS 2539..3633 FT /transl_table=1 FT /gene="CP" FT /product="coat protein" FT /db_xref="GOA:Q70P84" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q70P84" FT /experiment="experimental evidence, no additional details FT recorded" FT /protein_id="CAD89892.1" FT /translation="MPPQAPTRLGNAWGRRCGTGGLGFQGAWNRLRKRMTNGGGVPMIV FT GSGGGTVAAPVAVSRQIRSRKPKFTSVKGQVRVTHREYVTQVSGVGSGLFQLNGGLPSG FT QFRVNPNNAACFPWLLSIASNFDQYRFVNLQLCYVPLCATTEVGRVALFYDKDSGDSGP FT FERAELANMTHCAETPPWAEVSLTVPCDNVKRYLNDSNVTDLKLVDAGRFGYAVYGGNA FT NTYGDLFIQYTVELSEPQPTAGLIGEVXGNAGTVAGVVQPAYFNFDGFSTTQVAFKPTV FT VGTYLMTFILDGTGLVLGNVTSSAPEGMSVLDQNVAGSATRVIYVCRVTVQRPGDRLFF FT NYTGTATFWNLFVVRATRDISITT" FT CDS 3672..4325 FT /transl_table=1 FT /gene="p24" FT /product="putative movement protein" FT /db_xref="GOA:Q70P83" FT /db_xref="InterPro:IPR005332" FT /db_xref="UniProtKB/TrEMBL:Q70P83" FT /protein_id="CAD89893.1" FT /translation="MSIVNIDGEFEQPQFQDTPSKVYISHKSRKSLVCLGPSVFHKLWK FT VPKTGFYTPTGVTFVVTPHISESAGVTAVIKLIDMSDMSPSRVLYKSKEFNLGHGLTLE FT GSQLPFCLPIGEYPIHFEVTVSRSQFQATRTMFSTSLEWHLMYSPTPLSRVRSVFGVAH FT QPVLEVETNFRMKTKQISSSVVAVLPKQKALGKGLKPVGGTTPGLVTGNCVGTD" FT CDS 3800..4219 FT /transl_table=1 FT /gene="p15" FT /product="hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:Q70P82" FT /protein_id="CAD89894.1" FT /translation="MEGPKDWVLHPHRCDFCGHATYLRECWRHGSDQVNRHERHEPFPR FT LVQVQGVQPGTWPDIGRVTTAVLPANRGVSYTLRGHGVTITVSGHENDVFNVARVASDV FT LTHPVIQGEICVRGSPPTGVGGGNQLPYENQTNIV" XX SQ Sequence 4421 BP; 1004 A; 1070 C; 1257 G; 1087 T; 3 other; gagaatactg gcagtgattg accatcacgg tgagttgtcc agccatggat accggtattc 60 tctcgcggcg catagtgact gctgaagttg actttcaatt tggttctgtt gactacagtg 120 acccaagaat agtccacgca ttatgcaccc cgggtttgaa ggagcgggcg accttcgggc 180 gtcaaattgt tactgcgctc aaaatggccg tcattgcact gacgttacct gtgtggtggc 240 ccctcagact tgtctggagg gtcatcatca tgggagtgct gtgggtcacc aggttcwtca 300 ctcggtgcac caacctcatc aaatggtgcg ttaaggagac gcgcgttacc gtgcgagctt 360 attggaayat tctcaacaag cgtgccaggg ggttggttgt actgggttgt tgggcctcct 420 ttgtgttgta tggtccctat gccttacttt tgtggctggg cgtgattgtt ggatacataa 480 tttgtgtcct accgtctaat gtccgctact acattgagct gggccagaaa atacaggatg 540 catgggactc tgtggaagcg gatgatacca tagaggctcc gtgtaatggt gatatcctgg 600 aggttcgcaa gggacgcaat aagttcgctt gcaaactggc tgcccgggca attggtagag 660 ttggcttgct gaaggccacc cctgctaatg ccctggtcta tcagaaagtg atcttggatg 720 agatgaaaat cttaaatgtt cgctttgctg atcgagttag gattttgcca ttagcagtga 780 tggctagtct tgacaggcca gacgccgtgg ctagggttga ggactgcgtg gcagccctca 840 cccaacgcgg tgtgagcctc tagggaggcc tagtccgccg agagggttgt gacaccacca 900 ctgaccgcac aaattttgat ttatcagcgg ttaaaggggt gggtcccaca gagggactct 960 cggtgagggc tgggacctcg gccaagggtg atagaagttg gtactccttc aactcactgg 1020 ccactacata tgagtacgtt gttcacaacg gttccttgaa aaacgtgtgc agaggacttg 1080 tcgagcgggt cttctgtgtt gtggacaagc aaagcgggaa attggtccgc cccccaaaac 1140 cgaagccggg ggtcttttcc gctaagctcg gtgacgttgg tcgaactgtg agctcaatcg 1200 ttggttattg cccccactgg acacgtgacg agtttgttgc gtcttacagt gggccgcgaa 1260 aagcctcata cgagcgagct gcacagacgc tagacactct acctctcatg gaaagtgatg 1320 cacacttgag cacctttgtg aaggcagaga agatcaatgt cacgttgaag cccgacccgg 1380 ccccgcgtgt gatacaacca cggggccagc gatataacat tgaggtcggg cggtttttga 1440 agcccctgga accacgtctc atgaaggcga tagataaact gtggggatcc accacagcta 1500 ttaaggggta tacggttgag aaggtcggct cgatctttgc agataaggct tcaaggttta 1560 ggcacccggt ctatgttggg cttgatgctt cccgctttga ccagcactgt agtgctgatg 1620 cgttaaggtg ggaacattct gtctacaatg atatattccg ctcgccttac ttagccgagc 1680 tcctggaatg gcaggtccac aatcgtgggt cagcctacac ccacgagggc aaggttaatt 1740 atagggtgga ggggtgtcgg atgtctgggg acatgaacac ttccatggga aactatctga 1800 ttatgtcatg tctcatatat cagttctgca aggaaatcgg gttgcacgcg gagctagcaa 1860 actgtggtga tgattgtgtg ctattcctgg agaaacatga tcttaagaag cttaagcact 1920 taccgcagtg gtttgttaaa atgggatata ctatgaaggt tgaatcaccg gtgtacgaac 1980 ttgaggaagt tgaattctgt cagatgcacc cggtgagaac ctctaggggg tgggtgatgg 2040 ttaggcggcc tgacacggtc atgactaagg actgttgtgt cgtcagggga ggaatgacaa 2100 cggagcggct gcgagggtgg ttgggtgcga tgagagatgg ggggttgagc ctagccggcg 2160 atgttcctgt tctctcagcg ttttattctt cattccctca ataccgcaac ggagaaacct 2220 ctgattatga tgcaccacac aagttcaggg cgggtaagca gtatggtgct atcacggctg 2280 aggcacggta ttcattctgg ctggcgttcg ggttaacacc tgatgatcag ctagctattg 2340 aaggggacct ttcatccttc aagttttcac ttgaaccaca ggatttggtc acctccatgc 2400 ccagcttact tgactactgc actagaacct gaccagttca ccctaacacg atgtcgatcg 2460 tcccagcgaa tacgaacaga gccctagtgc gcgcaggcac tgctcttgcc tcaggagcca 2520 tgacagccat ggttccctat gccgccgcag gcgcccacca gattgggcaa cgcctgggga 2580 agaaggtgtg gaacgggtgg gttgggtttc cagggggcct ggaaccgcct cagaaaaagg 2640 atgacgaacg ggggaggagt tcccatgatt gttggaagtg gaggtgggac tgtggctgca 2700 ccagtcgctg tatcccgcca aatccgcagc aggaagccga agttcacaag tgtcaaaggt 2760 caagtgagag tgactcatcg tgagtatgtt acccaagtct ccggggtggg ctccggattg 2820 ttccagctca atggaggatt gccatcaggc cagtttaggg ttaacccaaa caatgctgcc 2880 tgcttcccgt ggttgctaag catagcatcg aacttcgacc agtacagatt tgttaatctg 2940 cagctgtgtt atgttccgct gtgcgccaca acggaggtgg ggcgagtggc tctcttctac 3000 gacaaggaca gcggagatag tgggccgttt gagcgagctg agcttgccaa catgacccat 3060 tgtgccgaaa caccaccatg ggcagaggta tcactcacag ttccgtgcga caatgtcaag 3120 cggtacctga atgattccaa tgttactgac cttaagctcg ttgacgccgg acggttcggt 3180 tacgcggtgt atgggggtaa tgccaatacc tatggcgatc tcttcataca atacaccgta 3240 gaacttagtg agccacagcc tacggctgga ctcattgggg aggtamctgg taatgccggt 3300 acggtggcag gcgtcgtgca acctgcgtac ttcaactttg atggattctc cacaacccaa 3360 gtagcattca agcctaccgt cgtgggtaca tatctcatga cgttcatact tgacggcaca 3420 ggtctggtgt tgggcaatgt cacatcctct gctcctgagg ggatgtctgt cctggaccag 3480 aatgtagcag gatcagccac acgtgtcatc tatgtgtgca gggttaccgt ccagcggcca 3540 ggcgaccggt tgttcttcaa ttacaccggc acagccacct tctggaactt attcgtggtg 3600 cgtgctacga gagacatctc tatcaccacc tagtcgcgtc gtgcctgggg gattagaagc 3660 tgaccacttc aatgtctatc gtcaatatcg acggtgagtt tgagcagcct caattccagg 3720 ataccccttc gaaagtctac atttcccata aatctcgcaa gtctctagtg tgcttggggc 3780 catctgtctt ccacaagtta tggaaggtcc caaagactgg gttttacacc cccaccggtg 3840 tgacttttgt ggtcacgcca catatctccg agagtgctgg cgtcacggca gtgatcaagt 3900 taatcgacat gagcgacatg agcccttccc gcgtcttgta caagtccaag gagttcaacc 3960 tgggacatgg cctgacattg gaagggtcac aactgccgtt ttgcctgcca atcggggagt 4020 atcctataca cttcgaggtc acggtgtcac gatcacagtt tcaggccacg agaacgatgt 4080 tttcaacgtc gctcgagtgg catctgatgt actcacccac cccgttatcc agggtgagat 4140 ctgtgttcgg ggtagcccac caaccggtgt tggaggtgga aaccaacttc cgtatgaaaa 4200 ccaaacaaat atcgtctagc gtcgtcgctg tgttgccgaa gcagaaagcc ctaggaaagg 4260 gcctaaagcc tgttggtggt acgactcctg gtttggtcac cgggaactgc gtaggaacag 4320 actgaaggtc actagtactg gcactatggc ggcataagcg acacacggag ccacacttcg 4380 gtggggctat aaggttccgt gttgtatccc tcttactttc a 4421 //