Dbfetch
ID AJ557129; SV 1; linear; genomic RNA; STD; VRL; 5339 BP. XX AC AJ557129; XX DT 21-APR-2004 (Rel. 79, Created) DT 24-MAY-2004 (Rel. 79, Last updated, Version 2) XX DE Potato yellow vein virus hsp70 gene for heat shock protein 70 homologue, cp DE gene for coat protein and ORF7, ORF60 and ORF10, genomic RNA 2 XX KW coat protein; cp gene; heat shock protein 70; hsp70 gene; ORF10; ORF60; KW ORF7. XX OS Potato yellow vein virus OC Viruses; Riboviria; Closteroviridae; Crinivirus. XX RN [1] RP 1-5339 RA Coutts R.H.A.; RT ; RL Submitted (21-APR-2003) to the INSDC. RL Coutts R.H.A., Biological Sciences, Imperial College London, Sir Alexander RL Fleming Building, Imperial College Road, London, SW7 2AZ, UNITED KINGDOM. XX RN [2] RX DOI; 10.1099/vir.0.79910-0. RX PUBMED; 15218192. RA Livieratos I.C., Eliasco E., Muller G., Olsthoorn R.C.L., Salazar L.F., RA Pleij C.W.A., Coutts R.H.A.; RT "Analysis of the RNA of Potato yellow vein virus: evidence for a tripartite RT genome and conserved 3'-terminal structures among members of the genus RT Crinivirus"; RL J. Gen. Virol. 85(Pt 7):2065-2075(2004). XX DR MD5; 10e884e9c7ceed8f92951c5b7aea28f1. DR EuropePMC; PMC2786829; 19793810. DR EuropePMC; PMC3889241; 24426308. DR RFAM; RF01078; PK-PYVV. XX FH Key Location/Qualifiers FH FT source 1..5339 FT /organism="Potato yellow vein virus" FT /host="Solanum tuberosum subsp. andigena" FT /mol_type="genomic RNA" FT /country="Peru:Cajamarca" FT /db_xref="taxon:103881" FT 5'UTR 1..620 FT CDS 621..2285 FT /gene="hsp70" FT /product="heat shock protein homologue" FT /db_xref="GOA:Q70PI5" FT /db_xref="InterPro:IPR013126" FT /db_xref="InterPro:IPR018181" FT /db_xref="InterPro:IPR029047" FT /db_xref="UniProtKB/TrEMBL:Q70PI5" FT /protein_id="CAD89682.1" FT /translation="MAHKAGLDFGTTFSTISSYSDGVMKVLKLNNSEYIPTCLSISDKG FT DVIIGGAAQVLDSGEIKTCYFYDLKRWVGVDKINYNVIKQKIKPAYVTSLVGNDVHITG FT INKGFSCTYTVKQLILLFIDTVVRLFSKIENLNIVSINVSVPADYKCKQRMFMRSVCDS FT LGFSLRRIINEPSAAAIYNVSKYPNYKYFIMYDFGGGTFDCSLITRDGRFVTVADTEGD FT SYLGGRDIDNAIQKYLMAKNKLSHPITSDFLASIKEECNSTSKTSFTVFDVNNRLKTVS FT FNKEDLAICTKPFCTRSLEILNNMIERNSITTGVIFLAGGSSLLKTVQDEVRSFSMKKN FT LECVIDKDLRNAVSFGCSMQHAQEDSGTMTYIDCNSHPLMDISMFGNPKIIIRKPMSVP FT YTHIEKRKVDRHYNTALNIYEGSDLFTLNNDWLISADVRTKDYCLEGQELSIKYVYNID FT GMLDLYIKSNFQNKDILLKNKFSLTEKIAKLDLKLTQLSTVDEAATLVAILSYYNSDLE FT VLLKLVKIPSLFESELSRVVSTKELLSKLVSLNKNFS" FT CDS 2289..2456 FT /product="hypothetical protein" FT /note="ORF7" FT /db_xref="GOA:Q70PI4" FT /db_xref="UniProtKB/TrEMBL:Q70PI4" FT /protein_id="CAD89683.1" FT /translation="MNSLCRIIFEVNKNFCVYFLSNNRDFLGDELTYLDPSIEDLRDLL FT RDHFYIRKVW" FT CDS 2450..4015 FT /product="hypothetical protein" FT /note="ORF60" FT /db_xref="GOA:Q70PI3" FT /db_xref="InterPro:IPR004909" FT /db_xref="UniProtKB/TrEMBL:Q70PI3" FT /protein_id="CAD89684.1" FT /translation="MVSIFRSPVVRDFLSMVFKTNDPSEKIGEINKYLVKNFHIENQNK FT YRTNIKGRLTELTSNYFVRNNEIFVNDGNFLEILKLPVIFMYRIRPELTKNSAYLPVNI FT FASYNYEFYKNSFSPHYDKDLNSFLSSNKEIGCLYTERDIQEHYPSVHGVRLLTLYRVC FT NSLGRYVDLNELDNGNIKGFSIDPDSKAKIIGEGLSSNPLFNSCVEIFRSYLELSATKA FT GNAKVEANKKIFTTYLNCMSLGESYERIRKNPLVIAKFIKLYEEFTKESRGFKDDFEAI FT KLLTPRFKVFLKKVFDVNSSLNDDILFIEMPKSSVVDLLSEPVSVGEYLRSKDAISVVS FT TSNTLSEKADLLATHIILRFLQDKLPAPEDILIDAFLMILGRTTTNSKRFGKPVLVTLK FT YENMSKEIDISVVVNALNNKVSGAHNEYLGMNVLRLWANSRSSRAMRLFRSLNFNPGLF FT SYCPGILDYMRFDFYKAIPLKDMTDEEVQSFRTLRLHTEKRTDPQGSYSAECDNWILNL FT KNRS" FT CDS 4025..4279 FT /product="hypothetical protein" FT /note="ORF10" FT /db_xref="GOA:Q70PI2" FT /db_xref="UniProtKB/TrEMBL:Q70PI2" FT /protein_id="CAD89685.1" FT /translation="MNSISELITEFGEDRVDEIFALHRSFGQSNPPLCDVLLNLISSKL FT FSHDDVFEESIIEFGDLKSFLLVTKFIRGVYNSRYNLRY" FT CDS 4284..5051 FT /gene="cp" FT /product="coat protein" FT /function="encapsidation" FT /db_xref="GOA:Q70PI1" FT /db_xref="InterPro:IPR002679" FT /db_xref="UniProtKB/TrEMBL:Q70PI1" FT /protein_id="CAD89686.1" FT /translation="MDPHGNPIVEPESSNPPESAGVSFTDSQKPPVDRKVKDDSYNLDL FT LISNVGRRDDIISPDDMSLDKLSKIQVRADRGDVLNDEDKLIFEGCLKNFCKRLTGVDP FT DPETFLGFFMSVAQMSLNQSTSVKNRKNLQLKNYLKIGDKEYIWKTADLLNYLSGQFPN FT KSNPLRQYMRLCENQIEMLKSSGKIVSDGHLAAKHGTTSQYSSSVGDYVNGSKTNISDD FT DLTANYLFKNAATKSTKKTKSIYNVAQLAGSIE" FT 3'UTR 5052..5339 XX SQ Sequence 5339 BP; 1765 A; 858 C; 1055 G; 1660 T; 1 other; cgaaaattac gtctggacaa cgtagtgacc ccttgggtta agactgagtt ctgtcaccct 60 atgtgaatta cttccgtagc cgaaaatatc cacttggacc atgtctgagt tttcagttgc 120 accacacaca caagaccaca atttattttt cccagccagt aaattaaatt aaaaaaataa 180 aaaatatttt atttttgaaa tctcgggata aaaacaacca tcttggcacg atgggcaaca 240 caccccccaa ccttagccgt atggctaatg gctctggaga atttggttgt cctttatccc 300 cggattagta ttttccattc aatttctcat ggcatagtag aatgaatctc tgatgttgaa 360 ctagtgagta tgtccaaact tcactcagtt cgacgtcaac agattgcgag atttcagatt 420 tgattctgag atagtcgtct gccaggtcta agattcttca gaccttctat tgtgttctag 480 agaaatataa acaaaaaatt caaaaagaaa taaagtgccc tctatcttca ataccagtgt 540 taaagaaaaa ttcataaaag aaaaaagaaa aaatttttgt tcattttaaa tttgaaaaac 600 aaataaaaat acaatctgat atggctcaca aagctggatt ggattttggt accaccttct 660 caaccatcag tagttatagc gatggtgtta tgaaagttct aaaattgaat aactccgagt 720 atattccgac ttgtttgtct atatcagaca aaggggacgt gataataggc ggggctgctc 780 aagttttaga cagtggtgaa ataaaracat gttattttta tgacctgaag cgttgggtcg 840 gtgtagataa aattaattat aatgtcataa aacaaaaaat aaaaccagca tatgtcacca 900 gtcttgtagg caatgatgtt cacattactg gaataaataa gggtttttct tgtacatata 960 ctgtgaagca gcttatatta ttatttattg atactgtagt tcgcttattt tcaaaaattg 1020 aaaatttaaa tatagttagt ataaatgtct cagtccctgc cgattacaaa tgcaagcaga 1080 ggatgttcat gagatcagtt tgtgactcac tgggtttttc attaagaagg atcatcaatg 1140 aaccttcagc cgcagctata tataatgtga gcaaatatcc aaactataaa tattttatta 1200 tgtatgattt tggtggtggt acttttgatt gttcactaat aacgagagat gggagattcg 1260 taaccgtggc agatactgaa ggagactcgt acctgggagg tcgagatatt gataatgcta 1320 tccagaagta tttgatggcg aagaacaaac tgtctcatcc tatcacctct gacttcttag 1380 cctcaataaa agaagaatgt aattcaactt cgaagacttc ttttacagtc tttgatgtga 1440 ataacagact caagacagtt tctttcaata aggaagatct ggctatctgc accaaaccat 1500 tttgtactag aagtcttgag attcttaaca atatgattga gaggaattcc ataactactg 1560 gtgtcatatt tctagccgga ggatcttctc tattgaagac tgtccaagat gaagtgagat 1620 cttttagcat gaaaaagaat ttggaatgtg ttatcgataa agatttgaga aatgcagtgt 1680 cattcggatg ttcaatgcaa catgctcaag aagactcagg caccatgact tacatagact 1740 gtaactctca tccgttaatg gatatctcaa tgtttggtaa tccaaagatt atcatccgaa 1800 aaccaatgtc agtcccatac actcacattg agaagaggaa agtcgatcgc cactacaata 1860 ctgctctgaa catttatgaa ggatcagact tgttcacttt gaataatgat tggttgatta 1920 gtgctgatgt gcgcacgaaa gattactgtc ttgagggtca agaattaagt ataaaatatg 1980 tatataatat agatggtatg ttagacttgt acataaaaag taatttccaa aataaagaca 2040 tcctactgaa gaacaagttc tctttaactg agaagattgc aaaattagat ttgaagctga 2100 cacaattgtc aacagttgac gaggctgcta ctctagttgc aattttgagt tattacaatt 2160 cagacctgga ggttttacta aagctggtaa aaattccatc tctctttgaa agtgaactct 2220 caagggtggt ttccaccaag gaacttttaa gtaagttggt gtctttaaat aaaaattttt 2280 catgattcat gaattcactt tgtaggataa tttttgaagt gaataaaaat ttttgtgttt 2340 atttcctgtc taataacaga gattttctgg gggacgagtt gacttacttg gatccgagca 2400 ttgaagatct cagagatctt ttaagagatc atttttatat taggaaagta tggtgagtat 2460 ttttaggagt ccagtagtca gagattttct cagtatggtt ttcaaaacca atgatccttc 2520 tgagaaaatc ggtgagataa ataaatattt agtaaaaaat tttcatattg aaaatcaaaa 2580 taaatataga actaacataa agggtaggtt aacagaatta accagtaatt attttgttag 2640 gaataatgag atatttgtaa atgacggtaa ttttctggag attttgaaat tgccagtgat 2700 ttttatgtac cggattcgtc cagagttgac gaagaatagt gcatatcttc ctgtgaatat 2760 ctttgcctcc tacaattatg aattttacaa gaatagcttt tctcctcatt atgataaaga 2820 tttgaattct tttctttcta gtaataagga gataggctgt ttatatacag agcgggatat 2880 tcaggaacac tacccgtccg ttcatggagt cagattgctt acactttata gggtttgtaa 2940 ttctttaggg aggtatgtag atttgaatga attagataat ggtaatatta aaggattctc 3000 aatagatcca gacagtaaag caaagattat cggagagggt ctttcctcga atcctctttt 3060 caactcgtgt gtggagatat ttaggagtta tctagagttg agtgccacta aagctgggaa 3120 tgctaaggtt gaggcgaata agaagatttt cactacatat ctcaactgta tgagtcttgg 3180 ggaaagttat gagaggataa ggaagaatcc acttgtgata gcaaagttca tcaaactcta 3240 cgaagaattc accaaagaat ctagagggtt taaagatgat tttgaggcca taaaacttct 3300 cactccgagg ttcaaagtgt tcttgaagaa ggtttttgat gtcaattcat ctcttaatga 3360 tgacatcctg ttcatagaaa tgccaaagtc ttcagtggtg gatttgttga gcgaaccagt 3420 ttcagttgga gaatacttga ggtcaaaaga tgcaatatcg gttgttagta cttccaatac 3480 tttgagtgag aaagcagact tgttagcaac tcatatcata ctgagattct tacaagacaa 3540 gctgcctgca cccgaagata tcctcataga cgcattcttg atgatcttgg ggagaacaac 3600 cactaattct aaaaggtttg gtaaaccagt gctcgtaact ttaaagtatg agaacatgtc 3660 caaagaaatt gatatctcag tggttgtaaa tgcactgaat aataaggtca gtggtgctca 3720 caatgaatac ctgggtatga atgtactgag actgtgggcg aattctagaa gctcgagagc 3780 catgagattg tttaggtctc tcaatttcaa cccaggatta ttctcttatt gtcctggaat 3840 acttgattac atgaggtttg acttttataa ggcaattcct ttgaaagaca tgacagatga 3900 ggaagtgcaa tcttttcgca ctttaaggtt acacactgag aagagaacag acccgcaagg 3960 ttcgtatagt gctgaatgtg acaattggat tctgaatttg aagaatagat cgtgacatct 4020 aggaatgaat tcaatttctg agttaattac tgaattcggt gaagatagag ttgacgaaat 4080 tttcgcactt cataggagtt ttggtcaatc caatcctcca ttgtgtgacg tcttgctcaa 4140 cctcatttca tcaaaactct tctctcatga cgatgtgttt gaagaaagca taatagaatt 4200 tggagacttg aagagttttc tgttagtgac taaattcatc agaggtgtgt ataatagtag 4260 gtataatttg aggtactaga acaatggatc ctcatggaaa tccgatcgtg gaacctgagt 4320 caagtaaccc ccctgaatct gcaggtgtgt catttaccga ttcacaaaaa cctcctgtag 4380 atcggaaagt aaaagatgac tcgtacaatt tagatctttt gatctccaat gttgggagac 4440 gggatgatat tatatctcct gatgatatga gtcttgacaa actttcaaag attcaggtta 4500 gagcagacag aggagatgtc ttgaatgatg aagataaatt aatctttgaa ggttgtttga 4560 agaacttttg caaaagattg actggagttg atccagatcc tgagaccttt cttgggttct 4620 tcatgagtgt agctcaaatg tcattaaatc aatctacttc tgttaaaaac agaaagaatc 4680 tccagttgaa gaattattta aaaataggag ataaagaata tatttggaag accgccgact 4740 tgttgaatta cttgtctgga cagtttccga ataagagtaa tccactgaga caatatatga 4800 gattgtgcga gaatcaaatt gaaatgctga aatcttctgg taagatagtc agtgatggtc 4860 atctcgctgc caaacatggt acgacctctc agtattcctc gtcagtcgga gattatgtca 4920 atggttcgaa aaccaacatt tctgatgatg atttgactgc aaattacctg ttcaagaatg 4980 cagcaactaa gagtactaag aagacaaaat caatttataa tgtcgctcaa ttagcaggat 5040 ctattgagta gatcacatat acagctacgg aagttacaac acatagcatg tagaacaaat 5100 cttaacaaaa actttatata tagtataaat ataacaaata aaaataaaca aaaggggtag 5160 ttttgcttaa tattttcaat gccccgggtc agatgcgaat aatgtattca gtgcatctaa 5220 taaatcccaa aattattata aaaatcgatg agaatcgcgc tgtcgcgatc tcatctgaga 5280 cgagtagaaa agttggtgct tagaccacgc cctctaccgt aataatagat aaataggcg 5339 //