ID AJ557128; SV 1; linear; genomic RNA; STD; VRL; 8035 BP. XX AC AJ557128; XX DT 21-APR-2004 (Rel. 79, Created) DT 24-MAY-2004 (Rel. 79, Last updated, Version 2) XX DE Potato yellow vein virus p226 gene for polyprotein, p59 gene for DE RNA-dependant RNA polymerase and p7 gene for putative hydrophobic membrane DE protein, genomic RNA 1 XX KW hydrophobic membrane protein; leader proteinase; KW methyl transferase/helicase; p226 gene; p59 gene; p7 gene; polyprotein; KW RNA-dependant RNA polymerase. XX OS Potato yellow vein virus OC Viruses; Riboviria; Closteroviridae; Crinivirus. XX RN [1] RP 1-8035 RA Coutts R.H.A.; RT ; RL Submitted (21-APR-2003) to the INSDC. RL Coutts R.H.A., Biological Sciences, Imperial College London, Sir Alexander RL Fleming Building, Imperial College Road, London, SW7 2AZ, UNITED KINGDOM. XX RN [2] RX DOI; 10.1099/vir.0.79910-0. RX PUBMED; 15218192. RA Livieratos I.C., Eliasco E., Muller G., Olsthoorn R.C.L., Salazar L.F., RA Pleij C.W.A., Coutts R.H.A.; RT "Analysis of the RNA of Potato yellow vein virus: evidence for a tripartite RT genome and conserved 3'-terminal structures among members of the genus RT Crinivirus"; RL J. Gen. Virol. 85(Pt 7):2065-2075(2004). XX DR MD5; f6339fbe4bd5b9eb71711b32ebc6ab03. DR EuropePMC; PMC2786829; 19793810. DR RFAM; RF01078; PK-PYVV. XX FH Key Location/Qualifiers FH FT source 1..8035 FT /organism="Potato yellow vein virus" FT /host="Solanum tuberosum subsp. andigena" FT /mol_type="genomic RNA" FT /country="Peru:Cajamarca" FT /db_xref="taxon:103881" FT 5'UTR 1..182 FT CDS join(183..6092,6094..7611) FT /gene="p226" FT /product="polyprotein" FT /note="ribosomal slippage" FT /db_xref="GOA:Q70PI7" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q70PI7" FT /protein_id="CAD89680.1" FT /translation="MSLINNHCGKVGNSTPLSGKLSLYHYTPIGKTIKKYLKCNKISTR FT NFHDVERLKVLYSYFNIQIRKYKRMPAVIRHKFGADYLSINKFIDSLMQTEVGSKEKSE FT PVVNEVISGTTVYGDGYKVIRYGNPLFVDVFIYFNRYDDDNPDFKYRILFSNKDKNNNR FT RNEVMCSVDHKVGEIKEFCRKFTLFSSLSSNQFQAQCLLLSVVEKIPQFKSLVRYHENS FT VFKTNMKYIREKFKRLSDDMKSLLDRGVKVGKKNSPKREVQTPYKADYPYDVKLTISDC FT GKEQFVIKHKSGEEKLVRNDGNSLKNLYNATLYQGYYILHEAARTPFGSRFKSHQNEYC FT WMDAFAVDGRKIPDRVIPYPRLKLRYLLSLGMGHILRGKMEVISDKIVHFDPRISRNTK FT KVNPEFMVGMKLDGSAGISTGNLDTFFDDICDGIMQQTTVRAENDLTTNVIRRVSNMLN FT EKLSVKRELIVKVCLTSAEKKMLCEVFPDIVIGFEDKSYSSHALFTAMRDCENFYTSKK FT FSCKNFIDAGGDVVRYLKTDARHVHVCAPVVDIKDSARQMRRSSQIDNLRGVTETITMC FT NKLCQDCDVESQNIVAVQVYDMSLNDMADSIRAHKSKTFDFSIIIPPEIMEEDCDVNLF FT NGSLRVKSEKDKIHYLYGKAGEVYSHDIQPLRDFLQTQIFCRHGVIYKKTLEMSRNGLH FT FFSVIPCENFKPGTYSVSTYYSKSETGTVLMSIPDKDRFGETVNHKVRVDRSIVTHLIE FT YVMNSALRVDDKAVEYLISQFRSRKNISIKGGKVVQIPFDLPMNLYPGFLGIILGEGLR FT LREKSMYFAKVSYYKHYMPSIFVVIMALLNRLINTARRNAYKVCLSVLRSFCSEDFIND FT MIFGDKRIRELDEIVEFKQTITVIGEKGVQNVMKNSLDRFIKESDERIFDVDKNLYPID FT EKFSHDEYEVMRELISSGGGASEGFQFIDFSAYSKIFNCVSKVFSTPKAVSDVAGLISK FT LISYLLTKGLNTLTGIKELIISLIKMIRKGVSSGSEALKGVINRCKNRVNNMVKNKEDD FT ILNKLEKFLEEDDEVDNTKSSLVRRRVKTPRNSVSNSKELTNSTVLVSNLLYKDGKYLL FT GTYITQTPKWFSFDIPSVNKFEEEQTESLLDDYLNTSFDLVSLGGGSKISPIGKFLQKL FT RILLKKLKLRVIQMYRRSFDIFDGCKEICVDGMNLLKLFFLDTDTIDLLIKGSSCILSY FT VITSLIFGGFKISKVLFMTLFVFSIKLSGIEKKYIGYDWITSQLSDNLFAGHLSNLSYI FT PTKFLFRRYIESKLKVSGSKSAIISEQCKDLIAKDLGYRKYAEYVTPNMIKIIGMISLM FT FSLNFPIFTLNMIIILTLLNDLSKYLKTVVVNMNIHLSYASILEKSNSSERFRKLKNIL FT RHKFETKKKEDSMRDEDGFDPQTRVGFKQDSNDEDIEVVFDYDGSYTETRKPTTCNAAS FT TSGKIDWADLENDSVESLDDEKLNFSKLVPTSDRSRICPKTQVGLSNVILTYPSSASVM FT FLESTNEVTNCLNEFYYLETQRLSIELGKIDKILSRTFNSIYNESMKFKDAVWHLRNRM FT DDSTIYISNNGKEWHRLKRGDVDFKLLEGSTKFDLNQNMIDFEEKTPGVQITSEEFLGL FT YTNNKCLGIESIMSSPGKFPGLKRRDNVIIYNKPPGAGKTTTIVNNLLRDINNKKRSIA FT LTSTSAGKREIAQKLRLRGVRQAHSYVRTYDAVLIKVGRMKLGVLYCDECFMIHSGQFV FT AVTEIITADRMELYGDKNQIPYLNRVPNTTSLYSFNHFLQYDMVHDDKSYRCPPDVCYI FT LSNLRNSSGELLYPKGVKSVNKNANILRSMEVLKFDSVNDLDGEAGRKYVTFTQPEKEE FT ISRIVSRNKKESDTANTVNEVQGGTFKTVELVRSKQYDNPIYSDINQFIVSISRHTESM FT RYRTIHSKLNDFVGEKINALSTVSDHVIKEYCFRQRVDEYRIEVDVCRFGNTLSRAPSS FT HFVAVNEFMELINPGLSAHDYLYRTLLYEYEQYELPFVDDLTLDITRSAPYTSGDFLVP FT KILGKGERTRPDTWKQVLISLSHRNFSAPRINERFDNVKTAEILSKNLIGCMKLERLYE FT NFDPVLPDLRRVDKWLISRDPNKLRRLYRSFSTDLLVNKFNDLKLMVKGSMKPKLDTSS FT YSMYTPPSNIVYYEQVVNMFYSPIFLEVFERIRYCMNDKIVMYSGMNLETLSEIISCKL FT TMPLNEYYTTEIDFSKFDKSQGVVFKLYEEMVYKFFKVSEDVYENIKFSEYFCRVRSRS FT GIQTELGAQRRTGSPNTWLSNTLTTMAVVLSSYNLDDVELFLVSGDDSLIFSKYPLDNR FT TQRMNVDFGMEAKFIENSVPYFCSKFIIQDRGRIKVIPDPVRFFEKLSVPVSYQDYENW FT NMIRERFISYKDLMVEFDYDTSCMLVDVMVSKRYSLPNMASYAALCYIHCLLANAQSFK FT RIYLDSILVSI" FT mat_peptide 183..1406 FT /product="putative leader proteinase" FT mat_peptide 1407..6092 FT /product="methyl transferase/helicase" FT mat_peptide 6094..7611 FT /gene="p59" FT /product="RNA-dependant RNA polymerase" FT CDS 7608..7793 FT /gene="p7" FT /product="putative hydrophobic membrane protein" FT /db_xref="GOA:Q70PI6" FT /db_xref="UniProtKB/TrEMBL:Q70PI6" FT /protein_id="CAD89681.1" FT /translation="MNGTVPIVMKFCIRKVGECGEDEVFRDRFSYIMIVYCYVLMVVLA FT VALCLIPCSKAIKQFL" FT 3'UTR 7794..8035 XX SQ Sequence 8035 BP; 2685 A; 1355 C; 1687 G; 2308 T; 0 other; cgaaaattaa aaaatttcct tactattagc ttttcagcga aatagtattt aaaatcaaca 60 ggttgccgct gctagtcagt ttcaaccatt ttcagattgc cgctgccagt cagtttcaat 120 cacacaaacc aaaacaaacc aaaccacaca aggcttgcca gtaccctaaa ctgatcttaa 180 ttatgagcct cataaacaac cactgtggca aagtgggcaa ctccaccccc ctctccggga 240 aattgtcgtt gtaccattat acccccatag gaaaaaccat aaaaaaatac ttaaagtgca 300 ataaaatcag taccagaaac tttcatgatg ttgaaaggtt gaaagtgctg tactcgtatt 360 ttaatattca aataagaaag tacaagagga tgccagcagt aatcaggcat aaatttggag 420 cagattattt gtccatcaat aaattcatag actcactaat gcaaactgaa gtgggttcta 480 aagaaaaatc tgagccagtt gttaatgagg tgatttcagg aaccacagtg tatggtgatg 540 gatataaagt catccgatat ggaaatcctc tctttgtaga tgtttttata tattttaata 600 ggtatgatga tgataatcct gatttcaaat acaggatttt gttttctaat aaagataaaa 660 ataataaccg tcggaatgag gtcatgtgtt ccgtggacca taaagtcggc gaaatcaaag 720 aattctgccg caaatttact ctattctcga gtctgtccag caaccagttt caagctcaat 780 gcttactgct gtcagtagta gagaagatcc cacagttcaa aagtctagta cgctatcatg 840 agaatagtgt cttcaagacg aacatgaaat acatcagaga aaaattcaaa agattgtctg 900 atgatatgaa atctctattg gatagaggtg tcaaagtcgg caagaagaac tcgccgaaga 960 gagaagtcca aactccatac aaagctgact atccatatga cgtcaagttg acaatctcgg 1020 actgcgggaa agaacagttc gtgataaaac acaaatccgg agaagaaaaa ctggtgagaa 1080 atgatggtaa ttctctcaag aatctgtaca atgctacctt ataccaaggg tactacattc 1140 tccacgaagc tgcgagaaca ccattcggct ccagattcaa gtcacaccag aatgaatact 1200 gctggatgga cgccttcgct gtcgatggaa ggaagattcc agatcgcgtg ataccatacc 1260 ctagactcaa gttgagatat ctgctttcat taggtatggg tcatatacta cgtggaaaga 1320 tggaggtcat cagtgataaa attgttcact tcgacccacg tatatcccgc aacactaaga 1380 aagtcaaccc agaattcatg gttggcatga aactagatgg atcagcggga ataagcactg 1440 gcaatttaga cacattcttt gacgatatat gtgatggcat catgcaacag accaccgtta 1500 gagcggagaa tgatctgact actaatgtta tcagacgtgt atcgaacatg ctgaatgaga 1560 aactttcagt caaacgtgaa ctgatagtaa aagtatgtct gacttcagct gagaagaaga 1620 tgttgtgcga agtatttcca gacattgtaa ttggttttga agataagtct tactcgtccc 1680 atgcgttgtt cacagccatg agagactgcg aaaattttta cacgtcaaag aagttttctt 1740 gtaagaactt tattgacgct ggaggtgacg tagtacgcta cctgaaaaca gatgccagac 1800 acgtgcatgt ctgtgctcct gtggttgaca taaaagactc agctaggcaa atgcgtcgta 1860 gtagtcagat cgacaaccta cgaggggtga ctgagaccat cactatgtgc aacaaattgt 1920 gccaagactg cgatgtggaa tcacagaata tagtcgccgt ccaagtttat gatatgagcc 1980 tgaacgatat ggcagatagc attagggctc ataaaagtaa aacattcgac ttctcaatta 2040 taattccgcc agagataatg gaagaagatt gtgatgtaaa tttgtttaat ggcagtctga 2100 gggtgaagtc agaaaaggac aagattcact atctgtacgg caaggctggt gaagtatact 2160 ctcatgatat acaaccactg agagatttct tgcaaactca gattttctgt agacatgggg 2220 ttatatacaa aaagactctg gagatgtctc gtaatggatt gcacttcttt tcagtgatac 2280 cgtgtgagaa cttcaaaccc gggacatatt cagtatcaac ttactactct aagtccgaga 2340 ctggcaccgt gcttatgagc atacctgata aagacagatt cggtgaaact gtcaaccata 2400 aagtcagagt tgatagatct atagtaaccc acctgataga atatgtcatg aactcagctc 2460 tccgtgtaga tgacaaagct gttgaatact tgatatctca attccgatct aggaagaata 2520 tatctatcaa agggggtaaa gtggtgcaga taccgttcga ccttccaatg aacttatatc 2580 cagggttcct agggatcatt ttgggtgaag gattaaggtt gagagaaaag tcaatgtact 2640 ttgctaaggt tagttattac aaacattaca tgccctcaat atttgtggtc atcatggcac 2700 tactcaaccg attaattaac actgctagga ggaatgccta taaagtatgc ttgagtgtgt 2760 tacgctcctt ttgttccgaa gatttcatta acgatatgat atttggagac aaaagaattc 2820 gggagctgga cgagattgtt gaattcaaac agaccataac tgtgattgga gaaaaaggag 2880 ttcaaaacgt tatgaagaac tcgcttgaca gattcatcaa agaatccgat gaacggattt 2940 ttgatgtgga caaaaattta tatccaattg acgaaaagtt ttcgcatgat gagtatgaag 3000 tcatgagaga attgatctca agtggtggtg gtgcgtcaga aggttttcag ttcatagatt 3060 tcagtgctta ctcaaaaatc ttcaactgtg tttcaaaagt ctttagtact cccaaagcag 3120 ttagtgatgt cgcaggtctc atcagcaagt tgatatcgta tctcctgaca aagggtctaa 3180 ataccttgac tgggatcaaa gaactcataa tttcattgat caaaatgatt cggaaagggg 3240 tgtcgtctgg gtcagaagcg ttgaaaggtg ttataaacag atgcaaaaat agagtaaata 3300 atatggtcaa gaacaaagaa gatgacatcc tcaacaaact cgaaaagttc ttggaggaag 3360 atgatgaagt agataatact aaatcgtctt tagttcgcag aagggtaaaa actccacgta 3420 attcggtgag taatagcaaa gaactcacaa acagcactgt gttggtgagt aacttgcttt 3480 acaaagatgg gaaatatctt cttggtactt acatcacgca gactccgaaa tggtttagct 3540 ttgacattcc atcagtgaac aaattcgaag aagaacagac agaaagccta ttagatgatt 3600 atttgaacac ctcctttgat ctggtgtctc taggcggggg tagtaagatc tcaccaattg 3660 gaaaatttct tcaaaaactt cgcattttat tgaagaaatt gaaattgaga gtcattcaga 3720 tgtatcggag atcgtttgac atttttgatg gttgcaagga gatttgtgta gatggaatga 3780 atttgctaaa actcttcttt ctcgacacag atacgataga cttgctgatc aaagggtcta 3840 gctgtatcct ttcatatgtc atcacaagtc tcatctttgg tggcttcaaa ataagtaagg 3900 tgctattcat gaccttattc gtattctcta taaagctttc gggaatagag aagaaatata 3960 taggttacga ttggataact tctcaattat cagataactt gtttgccgga catctgagca 4020 atctgagtta cattccaacg aaatttttgt ttaggaggta tattgaatct aaattgaaag 4080 tttctggttc aaaatctgcg attatatctg agcaatgtaa agatcttata gccaaagatt 4140 tgggttatag aaaatatgct gaatatgtga caccgaacat gataaagatc attggtatga 4200 tctcactgat gttcagcttg aacttcccga tctttactct caacatgatt attatactga 4260 cattactgaa tgacttgtca aaatatctga agacagtagt tgtcaacatg aatatccact 4320 tgagttacgc ttcaattctt gagaagtcca acagttcaga gcgattcaga aaattgaaga 4380 atatactgag acataaattc gaaaccaaga agaaagagga ttcaatgcga gatgaagatg 4440 gctttgatcc gcaaactaga gtgggtttca aacaagactc caatgatgag gacattgaag 4500 tagttttcga ctacgatgga tcctatactg agaccaggaa accgactacc tgtaatgcag 4560 ctagtacctc cgggaagata gattgggccg accttgaaaa cgattccgta gaaagtttag 4620 atgatgaaaa gcttaacttc tcaaagttag tacctactag tgatcgaagt agaatttgtc 4680 cgaagacaca agttggattg agtaacgtga ttttgactta tccatcatcc gcttcagtga 4740 tgtttttgga aagtaccaat gaagtgacca actgtcttaa tgagttctac tatctagaga 4800 cacagagact gtcaattgaa cttgggaaga ttgataaaat cttgtcaaga acattcaaca 4860 gtatatacaa tgaatcaatg aagtttaaag atgcggtgtg gcatcttcgt aacagaatgg 4920 atgattcaac aatatacatt tcaaataacg gtaaggaatg gcacagattg aaaagaggag 4980 atgtggattt caagttattg gagggaagta caaaattcga cttgaaccag aatatgattg 5040 actttgaaga aaagactccc ggcgttcaga ttacgtccga agagtttctc gggttgtaca 5100 ctaacaataa atgtttaggg atagaatcga tcatgtcaag tccagggaaa ttcccaggac 5160 taaagcggag agataatgtt ataatttata acaaacctcc aggagctggt aaaaccacaa 5220 caatcgtcaa taacttgttg agggacataa acaacaagaa aagaagtatt gcgttaacaa 5280 gtacttcggc tgggaagaga gagatagccc aaaaattaag attgaggggt gtgaggcaag 5340 cacattctta tgttagaacg tatgatgctg tactcataaa agtgggtagg atgaaactgg 5400 gtgtgctata ttgtgatgaa tgtttcatga tacatagcgg tcaatttgta gctgttacag 5460 aaattataac agctgacaga atggaattat atggtgataa aaaccaaatc ccatatctca 5520 atagagtgcc gaacactacc agcttgtatt ccttcaacca ctttcttcaa tacgatatgg 5580 ttcatgatga caagtcctac aggtgcccac ctgacgtatg ctacatattg tctaacttga 5640 ggaattcatc tggagaatta ttatacccaa aaggtgtgaa atctgttaat aagaacgcga 5700 acattttacg ctcgatggaa gtactgaaat tcgacagtgt gaatgatcta gatggtgaag 5760 cagggaggaa gtatgtgaca ttcactcaac ctgagaaaga agaaatctcg aggatagtgt 5820 cgaggaataa gaaagaatct gatacagcta acacagtgaa tgaagtccaa ggagggacct 5880 ttaagacagt ggagctagtc agatctaaac aatatgacaa ccccatatac agtgatatca 5940 atcagttcat agtgagtata tcacgccata cagagtctat gagatatcgt accattcatt 6000 caaagctcaa tgatttcgtt ggagaaaaaa tcaatgcttt gtctactgtg tctgatcacg 6060 ttataaaaga gtactgtttt agacagcgtg tttgacgaat ataggataga ggtcgatgtg 6120 tgtcgctttg gtaacacctt gagcagagcc ccgtcctcac attttgttgc cgtgaacgaa 6180 ttcatggaat tgataaatcc tggtttgagt gctcacgatt atctgtatcg aactctacta 6240 tacgagtacg aacagtatga actcccattt gtggatgatc tgactttaga tatcacgaga 6300 agtgcaccgt acacttctgg ggatttctta gtacctaaaa ttttaggtaa aggagaaagg 6360 acacgaccag acacttggaa acaggtgctt atttcccttt ctcacagaaa cttttcagca 6420 ccgaggataa acgagagatt cgataatgtc aagacggcag aaatcttaag taaaaattta 6480 atcggatgca tgaagttgga gagactatat gagaatttcg atccggttct accagaccta 6540 agacgtgttg ataaatggtt gatatcaaga gatccaaata agttgaggag attgtatcgt 6600 tcgttctcaa ccgatttatt agtcaacaaa ttcaatgatc tcaaactgat ggttaaaggg 6660 tccatgaagc ctaagttgga tacttcttct tatagcatgt acacaccacc ttccaatatt 6720 gtgtattatg agcaagtggt taacatgttt tactcaccca tatttttgga ggtctttgag 6780 agaatcaggt attgtatgaa tgataagatt gttatgtaca gcggaatgaa cctagaaaca 6840 ctttccgaga taataagttg caaattaaca atgcctttga atgagtacta caccactgaa 6900 atagattttt caaagtttga taagtcgcaa ggtgttgttt tcaaactata tgaagaaatg 6960 gtctacaaat tcttcaaagt ttcagaagat gtttatgaga atataaaatt ctcagagtat 7020 ttttgcagag tgagatcaag aagtggtatt caaactgaac taggagctca aaggaggaca 7080 ggatcaccta acacatggtt gtccaacaca ttaacaacca tggctgttgt cttatcatct 7140 tataatttag atgacgttga gctatttttg gttagtggtg atgacagttt gatattttca 7200 aagtatccac tcgataacag gactcaaagg atgaatgtgg actttggtat ggaagcgaag 7260 tttattgaga attctgtacc ttacttctgc tcaaagttca ttatacaaga taggggaaga 7320 attaaagtca taccagatcc agtaagattc tttgaaaagt tgtctgtacc tgtgtcatat 7380 caagactatg aaaattggaa tatgattaga gagagattca tttcatataa agatctgatg 7440 gtggaatttg attatgacac gagttgtatg ttagtagatg taatggtgtc aaaacggtat 7500 tctttaccga atatggcatc ttatgcggca ttgtgttaca ttcactgttt attagccaat 7560 gctcaatctt tcaaacgaat ttatttggat tcgatattag tgtcgatatg aatggaactg 7620 ttccaatagt tatgaaattc tgcattagaa aggtcggaga atgtggtgaa gatgaagtgt 7680 ttagagatag attcagttac ataatgatag tgtattgtta tgttttgatg gtagttctag 7740 ctgtagcact gtgtttgata ccttgtagta aagctatcaa acaattctta taaatagtat 7800 gaataaataa taatataata atataattta ataatataat aaataaaaac cgggtaattt 7860 tgcttaatat ttgtttaccc gaggtctagt acggatgaga tgtccagtgt acttgataaa 7920 tcctaaaact atatatagta ttctaatctt acgtttgttt agacagtata attagaatcg 7980 gtagaaaaga tggtttaaac cacgccttct accaagttag taaataaata ggcgg 8035 //