ID   AJ544273; SV 1; linear; genomic RNA; STD; VRL; 2180 BP.
XX
AC   AJ544273;
XX
DT   13-AUG-2004 (Rel. 80, Created)
DT   13-AUG-2004 (Rel. 80, Last updated, Version 1)
XX
DE   Barley mild mosaic virus gene for polyprotein, clone 2-1, genomic RNA
XX
KW   P1 protein; P2 protein; polyprotein.
XX
OS   Barley mild mosaic virus
OC   Viruses; Riboviria; Potyviridae; Bymovirus.
XX
RN   [1]
RP   1-2180
RA   Adams M.J.;
RT   ;
RL   Submitted (14-FEB-2003) to the INSDC.
RL   Adams M.J., Plant Pathogen Interactions Division, Rothamsted Research,
RL   Harpenden, Herts AL5 2JQ, UNITED KINGDOM.
XX
RN   [2]
RX   DOI; 10.1007/s00705-004-0318-7.
RX   PUBMED; 15290374.
RA   Kanyuka K., McGrann G., Alhudaib K., Hariri D., Adams M.J.;
RT   "Biological and sequence analysis of a novel European isolate of Barley
RT   mild mosaic virus that overcomes the barley rym5 resistance gene";
RL   Arch. Virol. 149(8):1469-1480(2004).
XX
DR   MD5; 1b35d3d9d90dbd24fb8c5c1c3388b4a8.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2180
FT                   /organism="Barley mild mosaic virus"
FT                   /segment="RNA2"
FT                   /host="Barley"
FT                   /isolate="F-SIL"
FT                   /mol_type="genomic RNA"
FT                   /country="France:Marne - Sillery"
FT                   /clone="2-1"
FT                   /note="rym5 resistance-breaking"
FT                   /db_xref="taxon:12466"
FT   CDS             2..1483
FT                   /product="polyprotein"
FT                   /db_xref="GOA:Q68VH2"
FT                   /db_xref="InterPro:IPR001456"
FT                   /db_xref="InterPro:IPR031159"
FT                   /db_xref="InterPro:IPR036417"
FT                   /db_xref="InterPro:IPR042308"
FT                   /db_xref="UniProtKB/TrEMBL:Q68VH2"
FT                   /protein_id="CAD66665.1"
FT                   /translation="MMMNSTIRQGWQQVLRRFSIPTSGDRLIVSNSTDQPIGLFGAFDT
FT                   SLQTLSQVTNDPEVLKQKSNIPTHLDVASVLEASPRSFPWVFLTNSFCTFGGSIHAQNL
FT                   QAFATAEFKSGFCYMNLLIPLSFDIIDAHADSFRGFVEQLPDTLGAYPSLSMVLNVMLH
FT                   AATRFPEIVASPIPTIAFDAESLQFHVTDKRGVPGMWNILKACRVYELLSLAADGIGCE
FT                   YMLYPVGAAPQYSFWKKSMDHFTSDRSVEFLAMQDLLASALEQDYATHDARDALLSALQ
FT                   NAGYTNVVARERRFPNGHDPSIVWLNLSEAPISEKLTELKRYLLVGHRSDDTADITHNV
FT                   HQHVFEVLKTMSVQFSKTTNVSIPFLSATRRLITTRRVQEAGAESRSGATPETVQQLAD
FT                   AELAKIVSEANMYNEMAASQRDNANATREATIREHVLSPVNALANVGMAAAFFRSGGLR
FT                   SRAFNPAMPTMPGGPAAAGRPMFQAFRGRGHRLNR"
FT   mat_peptide     2..788
FT                   /product="P1 protein"
FT   mat_peptide     789..1480
FT                   /product="P2 protein"
FT   3'UTR           1484..2180
XX
SQ   Sequence 2180 BP; 529 A; 626 C; 500 G; 525 T; 0 other;
     gatgatgatg aactctacga ttcgccaagg atggcagcag gtgctgaggc gcttttccat        60
     cccaacatcc ggagatagac tcatcgtttc caactccacc gaccaaccca tcggcctttt       120
     cggggcgttc gacacatcgc tgcaaacact ctcacaagtc accaatgatc ctgaggtctt       180
     gaagcagaag tccaacatcc ccacgcacct ggacgtggcc tccgtgcttg aagcaagccc       240
     acggtccttc ccatgggttt ttctcacgaa ctcattctgc accttcggtg gttcgataca       300
     tgctcagaat cttcaagcct tcgcaactgc cgagtttaag agcgggttct gttacatgaa       360
     tctgctaata ccactcagct ttgatatcat cgatgcacac gcagattctt ttcgcggctt       420
     tgttgaacaa cttcctgaca cgttaggcgc ctacccttca ctcagcatgg tgctaaacgt       480
     catgttacac gcagccacgc gtttccccga gatcgtcgcc tcccctatcc caaccatagc       540
     atttgacgcc gaatcattgc agttccatgt tactgataaa cggggcgtcc ctggcatgtg       600
     gaacatactc aaagcctgcc gtgtgtacga gcttctttcg cttgcagcag atggtatagg       660
     ttgcgagtac atgctatacc ctgttggtgc tgcaccccaa tactccttct ggaagaaatc       720
     catggaccat ttcacatccg accggtccgt ggaattccta gccatgcagg atctgctcgc       780
     cagtgcactt gaacaggatt atgcaacgca cgacgcgcgc gatgcactac tttcagctct       840
     ccagaacgca ggttacacaa acgttgttgc aagggagagg aggtttccaa atggccacga       900
     ccctagcatt gtctggttga acctgagcga agcccccatt tcagagaagc taactgaact       960
     taaacggtac ctcctagtcg gacataggag cgacgacact gctgatatca cacacaacgt      1020
     gcaccagcac gtttttgaag tcctcaagac catgtctgtg cagtttagca agacaacgaa      1080
     cgttagcata cctttcctca gtgccacgcg tcgtttaatc accacacgcc gtgttcaaga      1140
     agccggggcg gagagccgct ctggagcaac gcctgaaacc gttcagcaac tggctgacgc      1200
     agagctggca aaaattgtga gcgaggcaaa catgtacaat gagatggccg ccagccaaag      1260
     ggacaacgcc aacgcaacac gcgaagccac catccgtgag catgtgctca gccccgtcaa      1320
     cgctttggca aatgttggca tggccgctgc gttcttccga tccggtggtt tgcgctcaag      1380
     ggccttcaac cccgcaatgc caacaatgcc cggtggtcct gctgctgcgg ggcggccaat      1440
     gttccaagcc ttcaggggac gagggcatcg tcttaatagg taggcatcag aactctgtgc      1500
     tctggcacag cactgaacga gtgacacgcg ctcgttgtga agatccaatt ccacgcccag      1560
     cgtgccactg aacaaacgaa acacgtttgt tgtgataatt aattaatttt tgcgcagact      1620
     ttgtctgtgt tttctagagt gtgctgctct gcagctgcat tggagggttt cacgggaacg      1680
     acatcatcac accccatccg caaaccgcct gcattcacat ctttgtgcca ctttaaatac      1740
     tcatacgcat aggcaagtgc ctttctggca gagcatcccc gagcatcgac attcacgcga      1800
     ttgcaatcaa ctggcttaat ccccggtttt gcaatcaata gtgagttcta cctctggacg      1860
     tgttcccctg gaactgcaat cctcgttatg ttgtcgctgg ttactatcag ctcgtaaacc      1920
     atgatatcca cccacaatca gctactcgtg tactaacagt accggacacg cctatcctgc      1980
     acttaagcct gcaggacgct accaggtccg cctactgtta ccatttgtgt agtttgttgt      2040
     ggctccacct catatctaaa ttcagtacct gcatacaaaa cgtcatgcat ccctgttcaa      2100
     catgaacacg gtttgggaag aagcaagtca tcatagactg ctggcattgt taggttgaca      2160
     atgcttatgt acacaggaac                                                  2180
//