ID AJ544268; SV 1; linear; genomic RNA; STD; VRL; 7263 BP. XX AC AJ544268; XX DT 13-AUG-2004 (Rel. 80, Created) DT 13-AUG-2004 (Rel. 80, Last updated, Version 1) XX DE Barley mild mosaic virus gene for polyprotein, clone 1-12, genomic RNA XX KW 6K1 protein; 6K2 protein; coat protein; NIa protease; NIb polymerase; KW P3 protein; polyprotein; VPg protein. XX OS Barley mild mosaic virus OC Viruses; Riboviria; Potyviridae; Bymovirus. XX RN [1] RP 1-7263 RA Adams M.J.; RT ; RL Submitted (14-FEB-2003) to the INSDC. RL Adams M.J., Plant Pathogen Interactions Division, Rothamsted Research, RL Harpenden, Herts AL5 2JQ, UNITED KINGDOM. XX RN [2] RX DOI; 10.1007/s00705-004-0318-7. RX PUBMED; 15290374. RA Kanyuka K., McGrann G., Alhudaib K., Hariri D., Adams M.J.; RT "Biological and sequence analysis of a novel European isolate of Barley RT mild mosaic virus that overcomes the barley rym5 resistance gene"; RL Arch. Virol. 149(8):1469-1480(2004). XX DR MD5; 8cce253f635fabfec8834734e0846b68. XX FH Key Location/Qualifiers FH FT source 1..7263 FT /organism="Barley mild mosaic virus" FT /segment="RNA1" FT /host="Barley" FT /isolate="F-SIL" FT /mol_type="genomic RNA" FT /country="France:Marne - Sillery" FT /clone="1-12" FT /note="rym5 resistance-breaking" FT /db_xref="taxon:12466" FT 5'UTR 1..148 FT CDS 149..6925 FT /product="polyprotein" FT /db_xref="GOA:Q68VH7" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001592" FT /db_xref="InterPro:IPR001650" FT /db_xref="InterPro:IPR001730" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR013648" FT /db_xref="InterPro:IPR014001" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q68VH7" FT /protein_id="CAD66660.1" FT /translation="MEEFIPEVFYQNQVQSLKKILKSWKRDTSIYAYLAREQEVLAFLV FT LSPAHIAKLNKLLTEESARCALLAQNCETIEALAVVRQALQGVTLHFGDNGMEKGWLHM FT MKALDACLDESFSENAAALKKSIQAVGHKLIAAKNRIEGCERSVNHLTTFQFAREYGLS FT TTYFEKLSNIGGHIRSFVWSSDSGEIFPKLKRSSRTRRISTFTSYYWGEFWCNCIWFLC FT CCWSPARWCFNSAIFIWSLCGVLNLSMIVLQFALKRHFGRYYFRYIMSGVLAICAVCCV FT HLKNRKGPILQASQKDKRFIGILAFCITVIYMFDVDLADALSNNLHKISRLVNLFLDDN FT RGFATPALDNLTDFTTILQSGTSSDDLKIVQDTLAVVLQVDDEDATQDDAIYDSDGLQT FT FKQWVSHNQLAGMQLARPLQYPCSNTYGLTADNVAELSASMAQEAKQWSQVVGHTGSGK FT STRLPTAYANCLKGLAGRKKNVLVCEPTRAATVNVTSGISQNFGRLVYGRHEGWSNLGD FT KTIQVMTYGSALAAWKVDNKFLSQFDAVFLDESHLITTHALVFESICQEVTNIRKFYVS FT ATPRDGKKCPEAVRRYEIKTVKSECSSVDTFVRSQEKTNSLYVLDHDTVLVFLAGKAEC FT DRAASNWNKLYSTNMYAYSLTGDNFTMAYEKIVTEMLTKRTIVFCTNILETGVTLNVDC FT VVDFGFTMRPELDLVDKSLTLMRRRVTENERAQRIGRAGRLRTGHAICIGNPETRHDLV FT PPETLYEAALLSFVHGVQFYINEHFENAWIEGVTKAQASVMTQFKLSPFLMRDIVRDDG FT AIPPSPHKILKDYTHRNTDLIGTKLSVMSHVYNSWPLYRTVHQSIFRGDSNVPQTLRYA FT RVPFNVSTAHDFPWEDFAQACLEFQPRVLQVFSDSSSTSRIINLQIGKMHIVNSMEEVK FT ININSYQRSAENLRSVKDSFESSIFRTKLLRGNPTGKITKRIETLLDNVRVLQQIHAKL FT EMIAYSGGEKINMDKKSVDELNEIVELQSKNSLTAEELARILHLTKPTSTFFNLFAERG FT RQMLVTLLVMVAASLMYLVFWVSPRKQDDITIEGKGRAYNRDKRMGYDSYEEDEVRNKI FT NKKFKERSTRFSNDSKPETSSKYRNLKQEFVNFYDLKTDANVLQAVFTAMDGAVLLQTE FT NPMADIGHVNRLLQDHFEDSESQAVHEGLNTMVMCHLTMKDGRQFELDMEHHDPETLAK FT LGGEVGFRMNRDDLRQVGATRYINPRAQTSAATLEGMTMKPMSSFTIDSAKMVGFIKTA FT KDTLNCILYGDWIIAPAHIQQGEGDITFIFQHVQFTTTTERLASYGIRQFKGLDLVVIR FT RPQQIRAVKKDMRASILDTPTEIQMLYLSTKGGKYQVSTSAVCFPHYNNRWGHVISTAE FT GMCGCIVFNPTTNHIVGIHVSYNDTRRRNEFQAFTSDVLTTINAPGHEIPFSPWIFDWK FT FCGYTTKPRNMQSAPSTLERLNINATGFGFKLDAQEIKPAMLRSTESFSREFPDTQFKL FT IGEVKKGLIDKHTITGENPYFLEFLNTFKPYQWVQAFMDEYAPSILAYDAYFKDLKKYD FT RPPHANVFCQDTLTKAKHKMISILEEAGMGRTLVRTTEQVLLDMAWTTSGGPLYHGKKI FT DIVQHLSDDELVQFSEACQQALITGTLDGVWNGSLKAELRSSQKILERKTRVFTAAPIT FT SLIAMKYYVDDFNKQFYKTHLKAPHTVGINKFNRGWQNLYEKLNKPEWAHGSGDGSRFD FT SSIDGFLFDVIKDIRKHFMHTEHHKELDTIYEEIVNTKICLANGLVIQKNCGNNSGQPS FT TVVDNTLALMTAFLYAYARLTGDHAFELMDENFVFVCNGDDNKFSMSPSFMAKFGCDFS FT PFLSELGLTYEFDEATEDICENPYMSLTMVRTSFGIGFSLSIERIVAILQWSRAGGVLH FT AYLSGIAALFESFNTPKLFNLVHTYLLWLVTEHEEELFSMMELKDMFMPLPTREQIALL FT HYVGTEPIVEETFLQAGHEEPDPIVPPVPDTDLTNMAAAPPDNRRSRAVIPRGTSDWSL FT PEPKMRTLGFKSKINIETLANVPDGYMNTFASVATESQRRKWEEAARGDFGITDDEKWE FT KLLIAACIYFADNGTSPNFDEELTMEVNGGLNSIKEYPVRPFVVRAKKISTLRRIFRCY FT SIETKLMFVKLRRVPHWAIKHGCLDEIVFDFMIPDQFTSRTALETLKQTKLAAIGVGTS FT NSLLTSEQTNMRTTETRRRNDYDGHEALLR" FT mat_peptide 149..1024 FT /product="P3 protein" FT mat_peptide 1025..1225 FT /product="6K1 protein" FT mat_peptide 1226..3199 FT /product="P3 protein" FT mat_peptide 3200..3391 FT /product="6K2 protein" FT mat_peptide 3392..3928 FT /product="VPg protein" FT mat_peptide 3929..4567 FT /product="NIa protease" FT mat_peptide 4568..6169 FT /product="NIb polymerase" FT mat_peptide 6170..6922 FT /product="coat protein" FT 3'UTR 6923..7263 XX SQ Sequence 7263 BP; 2049 A; 1918 C; 1594 G; 1702 T; 0 other; aaaaataaaa ctccactcca acccaataca aacaacgaac aacaaacaac gaatttgcaa 60 cccaccaaag caacactgcc cgctagtagc aattcaacca aactcagcaa caaatcaccc 120 ttcgaccaaa cgaactctga ccatcgatat ggaggagttc attcctgaag tgttctacca 180 gaaccaggtt caaagtctca agaagattct taaatcctgg aaacgcgaca cttctattta 240 cgcgtatctt gctcgcgagc aagaggtcct agccttcctt gtactgagtc ctgcacacat 300 tgccaaattg aacaaactac tcactgagga gtctgcacga tgcgccctgc ttgcccaaaa 360 ctgtgaaacc atcgaagctc tggccgttgt gcggcaagcc ctgcagggtg tcacgctaca 420 ctttggtgac aatggcatgg agaaaggctg gctgcatatg atgaaagcac ttgatgcgtg 480 ccttgatgaa agcttcagcg agaacgccgc cgcactcaag aaaagcatcc aggcggtcgg 540 tcataagctt atcgcagcaa aaaaccgcat cgaaggttgc gagcgatctg tgaatcacct 600 tacaacgttt caatttgctc gcgaatatgg cttaagtact acatacttcg aaaagttgtc 660 caatatcggt gggcatattc gaagttttgt gtggtccagc gactcaggag aaattttccc 720 aaagctaaaa agatcatcac gtacgaggcg catctcgaca ttcacgagtt actactgggg 780 tgaattttgg tgcaactgca tctggttcct ctgctgctgc tggtcccccg cacgctggtg 840 ctttaattcc gcaattttca tatggagcct gtgtggtgtt ttaaacttat ctatgattgt 900 tctacagttt gctcttaagc gtcactttgg tagatactat tttcgataca taatgtctgg 960 tgtcctagct atttgcgccg tttgttgtgt tcatcttaaa aacagaaaag ggcctatatt 1020 gcaagcctcc caaaaagata agcgtttcat tggtatttta gctttctgca ttactgttat 1080 atacatgttt gatgttgatc ttgccgacgc gcttagtaat aatctccata agatctcccg 1140 ccttgtgaat cttttccttg atgacaaccg tggatttgca acacctgccc tcgacaatct 1200 aaccgacttc acaacaatcc ttcaaagtgg aacatcaagt gacgacctga agattgttca 1260 agacacgttg gctgtagttt tgcaagtcga tgacgaggat gcaactcagg atgatgccat 1320 atatgattcc gatgggcttc agacttttaa acaatgggtc tcacacaacc agctagccgg 1380 gatgcaactt gcacgcccac tacaataccc ttgctcgaac acttatggtc taaccgcgga 1440 caacgttgca gaactatccg ccagcatggc acaggaagca aagcagtggt cacaagttgt 1500 tgggcacact ggttccggga agtccacacg actaccaact gcatacgcca actgcttgaa 1560 aggcttggcc ggacgaaaga aaaatgtcct cgtttgcgaa cccacaagag ccgccactgt 1620 caatgtaact agcggcattt cgcagaattt tggcaggctt gtgtacgggc ggcatgaagg 1680 ctggagcaac ctcggcgaca aaacaataca ggtcatgaca tatggttccg cacttgcagc 1740 atggaaagtc gacaacaaat tcctgagcca gtttgacgca gtatttcttg acgagtctca 1800 ccttataacc acgcacgccc ttgtcttcga aagcatttgc caggaggtta caaacattcg 1860 caagttctat gtatcagcca caccccgcga tggtaagaag tgtccagagg ccgtgcgcag 1920 atacgaaatc aaaactgtga aatctgagtg cagtagtgtc gacacttttg ttcgaagcca 1980 ggagaaaaca aactcgcttt acgttctcga ccacgacacc gtcctcgttt ttctcgctgg 2040 aaaggccgag tgtgacagag cagcaagcaa ctggaacaag ctctactcaa ccaacatgta 2100 cgcctactct ctaacaggtg acaacttcac aatggcatat gagaagattg ttacagaaat 2160 gctcactaaa cgcaccatcg ttttctgcac gaacatcctg gaaaccggcg tcacccttaa 2220 cgtggactgc gttgtcgact tcggattcac catgcgtccc gaacttgatc ttgttgataa 2280 atcgctaacc ttgatgcgac gccgagtcac cgagaacgaa cgtgcacagc gcattgggcg 2340 cgcaggaaga ctcagaactg gacacgcaat ctgtattggc aatcccgaaa cacgccacga 2400 cttagtcccg ccagaaacac tctacgaagc agctcttctt agcttcgtgc acggcgtgca 2460 attctacatc aatgaacact tcgaaaacgc ctggattgaa ggtgtcacaa aggctcaagc 2520 ctccgtcatg acacaattca aactctctcc tttcctcatg cgtgatattg ttcgcgacga 2580 tggtgcaata ccaccatcac cccacaagat actcaaggat tacacacacc gcaacaccga 2640 tctgatagga actaaactct ccgttatgtc acatgtttat aattcatggc ctctttaccg 2700 aacagtgcac caatccatct tccgtggaga ttccaatgtt ccacaaacgc ttagatatgc 2760 acgcgtcccc ttcaatgtta gcactgctca tgattttcca tgggaagact tcgcacaggc 2820 atgccttgaa ttccagccac gcgtccttca ggtcttcagt gacagcagca gcacttcgcg 2880 cataatcaac ctgcagattg ggaagatgca catcgtcaat tctatggaag aagttaagat 2940 aaacataaac agctaccagc gctccgcaga aaacctacgc tcagttaaag acagcttcga 3000 aagctcgatc ttccgaacaa aactgcttcg tggaaaccca actgggaaga taactaagcg 3060 catcgagact ctccttgaca acgtgcgagt gcttcaacag atacatgcga aactcgagat 3120 gattgcatac tcaggtggag agaaaattaa catggacaag aaatcagttg acgagctaaa 3180 tgagattgtc gaactccaga gcaaaaactc actcactgcc gaggaactgg cgcgcatatt 3240 gcacctgaca aaacctacct ccaccttctt caatctgttt gctgaacgtg gtcggcaaat 3300 gctcgtcact ctcctggtta tggttgccgc ctcactcatg tatctcgttt tctgggtttc 3360 tcccaggaaa caggacgaca ttaccattga ggggaaaggc agggcataca accgtgacaa 3420 gcgcatgggg tacgactcct acgaggaaga cgaagttcgc aacaagatca acaaaaagtt 3480 caaagagcgc agcacaaggt tctccaatga ctctaaaccg gaaacaagct cgaaataccg 3540 caatctgaag caagagtttg ttaacttcta tgatctcaaa accgatgcga acgtgctaca 3600 agctgtgttc actgcaatgg acggggccgt ccttcttcaa accgaaaatc caatggcaga 3660 cattggccat gtcaataggc tgctgcagga ccactttgaa gacagtgaga gccaggctgt 3720 gcatgaaggc ctcaacacca tggtcatgtg ccacctaact atgaaagatg gaagacagtt 3780 tgagcttgac atggaacacc atgatcccga aactctcgcc aaacttgggg gcgaagttgg 3840 tttcagaatg aacagagacg acttacgtca agttggagcc acacgataca tcaacccaag 3900 agcacaaaca tctgcagcga cgctcgaagg catgaccatg aaacccatga gttctttcac 3960 cattgacagc gcaaagatgg ttggcttcat caagactgca aaagacacac tcaactgcat 4020 cctttacggc gactggatta tagctcctgc gcacatacag cagggcgaag gggacataac 4080 attcatcttc cagcacgtac aattcacgac tacaactgaa cgtttggcta gctacggcat 4140 tcggcagttc aaaggtcttg accttgttgt catccgacgc cctcagcaga tacgcgcagt 4200 caagaaggac atgcgtgcta gcattctcga cacacccact gaaatacaaa tgctctactt 4260 gtccactaaa ggtggtaagt accaagtgtc cacgtccgct gtgtgctttc cacactacaa 4320 taaccgatgg ggacacgtca tctcaacagc agaaggcatg tgcggctgta ttgtattcaa 4380 ccccaccacg aaccacatcg ttggaatcca cgtctcctac aacgacacgc gcagaagaaa 4440 tgagtttcaa gctttcacaa gtgacgttct gacaacgatt aatgcacccg gacacgagat 4500 acctttcagc ccatggatct tcgactggaa gttttgtggg tacacaacaa aaccacgaaa 4560 catgcaaagc gcaccgagca cactcgagcg actcaacatc aatgccacag gctttggttt 4620 caagctcgat gctcaggaga ttaaaccagc catgcttcga tccacagagt cgttctccag 4680 ggagttccca gacacacagt tcaaactcat tggggaagtg aagaaaggac tcatcgacaa 4740 acacacaatc acaggagaga acccatactt ccttgaattc ctgaacacat tcaaaccata 4800 ccaatgggtg caggccttca tggacgagta cgcaccctcc atccttgcct atgatgcgta 4860 ttttaaagat ctgaagaaat atgataggcc accacacgca aatgttttct gtcaggacac 4920 actaaccaaa gctaagcata agatgatcag catcctcgag gaagcaggca tgggaaggac 4980 cctagtacga accaccgagc aggtcttgct tgacatggcg tggaccacct ctggtggacc 5040 cttgtaccat ggtaagaaga tcgacattgt gcaacacttg tctgatgacg agcttgtaca 5100 attcagtgag gcctgccaac aggctcttat cactggaacg ctggatggag tctggaacgg 5160 atcactcaaa gctgagctgc gctcttcgca gaaaatcctc gaacggaaaa cccgcgtttt 5220 cactgctgca cccataacaa gcctcattgc gatgaaatac tacgtggatg atttcaacaa 5280 acagttctat aaaacccatc tcaaagcacc gcacacagtc ggcatcaaca agtttaaccg 5340 cggatggcag aatctgtatg agaagctcaa caaacctgaa tgggcgcatg ggagtgggga 5400 tggttccagg tttgacagtt ccattgatgg attccttttt gatgtcatca aggacattcg 5460 aaagcatttc atgcacacgg aacatcacaa agaactcgac acaatctacg aagaaattgt 5520 caacacgaag atatgtctgg cgaacggcct agtcattcaa aagaattgcg ggaacaacag 5580 tgggcagcca agcactgttg tggacaatac actcgcactc atgaccgctt ttctctacgc 5640 atatgcccgg ctcactggag accacgcctt cgaactcatg gacgaaaact ttgttttcgt 5700 ttgcaatggt gatgacaaca agttttccat gtcacctagc ttcatggcga agtttggatg 5760 cgatttctcc ccatttctct ctgagctcgg gctaacctac gaattcgatg aagcaactga 5820 agacatctgc gaaaacccct acatgtcctt gacgatggtc cgcacctcgt ttgggattgg 5880 tttctctctc tccattgagc gcatcgttgc aattttgcaa tggagtcgcg ctggtggagt 5940 cttgcatgcc tatctctctg gcatcgctgc tcttttcgaa tccttcaaca cacccaaact 6000 cttcaatctc gtgcacacat atctcctttg gctcgtcaca gagcacgagg aggaactctt 6060 ctccatgatg gaactcaaag acatgttcat gcccttgcct actagggaac agatagcctt 6120 gctgcactac gttgggactg agcccatcgt ggaggaaaca tttctgcaag caggacacga 6180 agaaccagac cccatcgttc ccccggttcc tgacaccgat ctaacgaaca tggctgccgc 6240 accacccgac aacagaagat cacgcgccgt catcccccgt ggaaccagtg attggagcct 6300 gcctgaaccc aaaatgcgaa cactgggttt caagtccaag atcaacatcg aaacacttgc 6360 caatgtcccc gacgggtata tgaatacctt cgcatccgtt gcaactgaat cgcaacgtag 6420 gaaatgggag gaggccgcac gtggcgattt cggcatcact gacgatgaga aatgggagaa 6480 gctgctcatt gctgcttgta tatatttcgc agacaatggt acctcaccaa atttcgacga 6540 ggaactcact atggaggtta atggcggtct caactccatt aaagagtacc ccgttcgccc 6600 ctttgtcgtt agagccaaaa agatttccac gctgcgcaga atctttcgct gttactccat 6660 cgaaacgaag ctcatgttcg tgaagctgag gcgcgtgccg cactgggcca taaagcacgg 6720 atgcctcgat gagatcgtct ttgatttcat gatccccgac cagttcacct ctaggactgc 6780 acttgagaca ctgaagcaga ccaagcttgc tgccattggt gttggcacaa gcaattctct 6840 gctcacctcc gagcagacga acatgaggac cactgaaacc cgacggcgca atgactacga 6900 tggtcacgag gcgctcctcc ggtagatctc tcatgcactc acatttcctt ttaagcaatg 6960 catttcaata cgcttttaat tatatcaagc gtcaagaatt tctcccgctt gcagttaatc 7020 cttatagggt ggcactttgt gttatgcaat ggaaaattca gtgacgcaat caaccatcat 7080 tggctggtga caccgcagta ctttctttat ttcacatcaa gcgaccagca catcgcccgc 7140 ttacagctaa tcctacctga gggtggcact ctgtgttatg taatggaatg tgcaatctcg 7200 caaccaaccg tcattggttg atggtgcggc ctaacacccg cgctcttgta taccggaaag 7260 gtt 7263 //