ID AJ544266; SV 1; linear; genomic RNA; STD; VRL; 7262 BP. XX AC AJ544266; XX DT 13-AUG-2004 (Rel. 80, Created) DT 13-AUG-2004 (Rel. 80, Last updated, Version 1) XX DE Barley mild mosaic virus gene for polyprotein, isolate UK-L, genomic RNA XX KW 6K1 protein; 6K2 protein; coat protein; NIa protease; NIb polymerase; KW P3 protein; polyprotein; VPg protein. XX OS Barley mild mosaic virus OC Viruses; Riboviria; Potyviridae; Bymovirus. XX RN [1] RP 1-7262 RA Adams M.J.; RT ; RL Submitted (14-FEB-2003) to the INSDC. RL Adams M.J., Plant Pathogen Interactions Division, Rothamsted Research, RL Harpenden, Herts AL5 2JQ, UNITED KINGDOM. XX RN [2] RX DOI; 10.1007/s00705-004-0318-7. RX PUBMED; 15290374. RA Kanyuka K., McGrann G., Alhudaib K., Hariri D., Adams M.J.; RT "Biological and sequence analysis of a novel European isolate of Barley RT mild mosaic virus that overcomes the barley rym5 resistance gene"; RL Arch. Virol. 149(8):1469-1480(2004). XX DR MD5; 599490e791696d124f11e0bcb08879dc. XX FH Key Location/Qualifiers FH FT source 1..7262 FT /organism="Barley mild mosaic virus" FT /segment="RNA1" FT /host="Barley" FT /isolate="UK-L" FT /mol_type="genomic RNA" FT /country="United Kingdom:Lincolnshire - Rothwell" FT /db_xref="taxon:12466" FT 5'UTR 1..148 FT CDS 149..6925 FT /product="polyprotein" FT /db_xref="GOA:Q68VH9" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001592" FT /db_xref="InterPro:IPR001650" FT /db_xref="InterPro:IPR001730" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR013648" FT /db_xref="InterPro:IPR014001" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q68VH9" FT /protein_id="CAD66658.1" FT /translation="MEEFIPEVFYQNQVQSLKKILKSWKRDTSIYAYLAREQEVLAFLV FT LSPAHIAKLNKLLTEESTRCALLAQNCETIEALAVVRQALQGVTLRFGDNGMEKGWLHM FT MKALDACLDESFSENAAALKKSIQAVGHKLIAAKNRIEGCERSVNHLTTFQFAREYGLS FT TTYFEKLSNIGGHIRSFVWSSDSGEIFPKLKRSSRTRRISTFTSYYWGEFWCNCIWFLC FT CCWSPARWCFNSAVFIWSLCGVLNLSMIVLQFALKRHFGRYYFRYIMSGVLAICAVCCV FT HLKNRKGPILQASQKDKRFIGILAFCITVIYMFDVDLADALSNNLHKISRLVNLFLDDN FT RGFATPALDNLTDFTTILQSGTSSDDLKIVQDTLAVVLQVDDEDATQDDAIYDSDGLQT FT FKQWVSHNQLAGMQLARPLQYPCSNTYGLTADNVAELSASMAQEAKQWSQVVGHTGSGK FT STRLPTAYANCLKGLAGRKKNVLVCEPTRAATVNVTSGISQNFGRLVYGRHEGWSNLGD FT KTIQVMTYGSALAAWKVDNKFLSQFDAVFLDESHLITTHALVFESICQEVTNIRKFYVS FT ATPRDGKKCPEAVRRYEIKTVKSECSSVDTFVRSQEKTNSLYVLEHDTVLVFLAGKAEC FT DRAASNWNKLYSTNMYAYSLTGDNFTMAYEKIVTEMLTKRTIVFCTNILETGVTLNVDC FT VVDFGFTMRPELDLVDKSLTLMRRRVTENERAQRIGRAGRLRTGHAICIGNPETRHDLV FT PPETLYEAALLSFVHGVQFYINEHFENAWIEGVTKAQASVMTQFKLSPFLMRDIVRDDG FT AIPLSLHKILKDYTHRNTDLVGTKLSVMSHVYNSWPLYRTVHQSIFRGDSNVPQTLRYA FT RVPFNVSTAHDFPWEDFAQACLEFQPRVLQVFSDSSSTSRIINLQIGKMHIVNSMEEVK FT ININSYQRSAENLRSVKDSFESSIFRTKLLRGNPTGKITKRIETLLDNVRVLQQIHAKL FT EMIAYSGGEKINMDKKSVDELNEIVELQSKNSLTAEELARILHLTKPTSTFFNLFAERG FT RQMLVTLLVMVAASLMYLVFWVSPRKQDDITIEGKGRAYNRDKRMGYDSYEEDEVRNKI FT NKKFKERSTRFSNDSKPETSSKYRNLKQEFVNFYDLKTDANVLQAVFTAMDGAVLLQTE FT NPMADIGHVNRLLQDHFEDSESQAVHEGLNTMVKCHLTMKDGRQFELDMEQHGPETVAK FT LGGEVGFRMNRDDLRQVGATRYINPRAQTSAATLEGMTMKPMSSFTIDSAKMVGFIKTA FT KDTLNCILYGDWIIAPAHIQQGEGDITFIFQHVQFTTTTERLASYGIRQFKGLDLVVIR FT RPQQIRAVKKDMRASILDTPTEIQMLYLSTKGGKYQVSTSAVCFPHYNNRWGHVISTAE FT GMCGCIVFNPTTNHIVGIHVSYNDTRRRNEFQAFTSDVLTTINAPGHEIPFSPWIFDWK FT FCGYTTKPRNMQSAPSTLERLNINATGFGFKLDAQEIKPAMLRSTESFSREFPDTQFKL FT IGEVKKGLIDKHTITGENPYFLEFLNTFKPYQWVQAFMDEYAPSILAYDAYFKDLKKYD FT RPPHANVFCQDTLTKAKHKMISILEEAGMGRTLVRTTEQVLLDMAWTTSGGPLYHGKKI FT DIVQHLSDDELVQFSEACQQALITGTLDGVWNGSLKAELRSSQKILERKTRVFTAAPIT FT SLIAMKYYVDDFNKQFYKTHLKAPHTVGINKFNRGWQNLYEKLNKPGWTHGSGDGSRFD FT SSIDGFLFDVIKDIRKHFMDTEHHKELDTIYEEIVNTKICLANGLVIQKNCGNNSGQPS FT TVVDNTLALMTAFLYAYARLTGDHAFELMDENFIFVCNGDDNKFSMSPSFMAKFGCDFS FT PFLSELGLTYEFDEATEDICENPYMSLTMVRTSFGIGFSLSIERIVAILQWSRAGGVLH FT AYLSGIAALFESFNTPKLFNLVHTYLLWLVTEHEEELFSMMELKDMFMPLPTREQIALL FT HYVGTEPIVEETFLQAGHEEPDPIVPPVPDTDLTNMAAAPPENRRSRAVIPRGTSDWSL FT PEPKMRTLGFKSKINIETLANVPDGYMNTFASVATESQRRKWEEAARGDFGITDDEKWE FT KLLIAACIYFADNGTSPNFDEELTMEVNGGLNSIKEYPVRPFVVRAKKISTLRRIFRCY FT SIETKLMFVKLRRVPHWAIKHGCLDEIVFDFMIPDQFTSRTALETLKQTKLAAIGVGTS FT NSLLTSEQTNMRTTETRRRNDYDGHEALLR" FT mat_peptide 149..1024 FT /product="P3 protein" FT mat_peptide 1025..1225 FT /product="6K1 protein" FT mat_peptide 1226..3199 FT /product="P3 protein" FT mat_peptide 3200..3391 FT /product="6K2 protein" FT mat_peptide 3392..3928 FT /product="VPg protein" FT mat_peptide 3929..4567 FT /product="NIa protease" FT mat_peptide 4568..6169 FT /product="NIb polymerase" FT mat_peptide 6170..6922 FT /product="coat protein" FT 3'UTR 6923..7262 XX SQ Sequence 7262 BP; 2047 A; 1928 C; 1602 G; 1685 T; 0 other; aaaaataaaa ctccactcca acccaataca aacaacgaac aacaaacaac gaatttgcaa 60 cccaccaaag caacattgcc cgctagtagc aattcaacca aactcagcaa caaatcaccc 120 ctcgaccaaa cgaactctga ccatcgatat ggaggagttc attcctgaag tgttctacca 180 gaaccaggtt caaagtctca agaagattct taaatcctgg aaacgcgaca cttctattta 240 cgcgtatctt gctcgcgagc aagaggtcct agccttcctt gtactgagtc ctgcacacat 300 tgccaaattg aacaaactac tcactgagga gtctacacga tgcgccctac ttgcccaaaa 360 ctgtgaaacc atcgaagctc tggccgttgt gcggcaagcc ctgcagggtg tcacgctacg 420 ctttggtgac aatggcatgg agaaaggctg gctgcatatg atgaaagcac ttgatgcgtg 480 ccttgacgaa agcttcagcg agaatgccgc cgcactcaag aaaagcatcc aggcggtcgg 540 tcacaagctt atcgcagcaa aaaaccgcat cgaaggttgc gagcgatctg taaatcacct 600 tacgacgttt caatttgctc gcgaatatgg cttaagtact acatacttcg aaaagttgtc 660 caatatcggt gggcatattc gaagttttgt gtggtccagc gactcaggag aaattttccc 720 aaagctaaaa agatcatcac gtacgaggcg catctcgaca ttcacgagct actactgggg 780 tgaattttgg tgcaactgca tctggttcct ctgctgctgc tggtcccccg cacgctggtg 840 ctttaattcc gcagttttca tatggagctt gtgtggtgtt ttaaacttat ctatgattgt 900 tttacagttt gctcttaagc gtcactttgg tagatactat tttcgataca taatgtctgg 960 tgtcctagct atttgcgccg tttgttgtgt tcatcttaaa aacagaaaag ggcctatatt 1020 gcaagcctcc caaaaagata agcgttttat tggcatttta gctttctgca ttactgttat 1080 atacatgttt gatgtcgatc ttgccgacgc gcttagtaat aatctccata agatctcccg 1140 ccttgtaaat cttttccttg atgacaaccg tggatttgca acacctgccc tcgacaatct 1200 aaccgacttc acaacaatcc ttcaaagtgg aacatcaagt gacgacctga agattgttca 1260 agacacgttg gctgtagttt tgcaggtcga tgacgaggac gcaactcagg atgatgccat 1320 atatgattcc gatgggcttc agacttttaa acaatgggtc tcacacaacc agctagccgg 1380 aatgcaactt gcacgcccac tacaataccc ttgctcgaac acttacggtc taaccgcgga 1440 caacgttgca gaactatccg ccagcatggc acaggaagca aagcagtggt cacaagttgt 1500 tgggcacact ggttccggga agtccacacg actaccaact gcatacgcca actgcttgaa 1560 aggcttggcc ggacgaaaga aaaatgtcct cgtttgcgaa cccacaagag ccgccactgt 1620 caatgtaact agcggtattt ctcagaattt tggcaggctc gtttacgggc ggcatgaagg 1680 ctggagcaac ctcggcgata aaacaataca ggtcatgaca tatggttccg cacttgcagc 1740 atggaaagtc gacaacaaat tcctgagcca gttcgacgca gtatttcttg acgagtctca 1800 ccttataacc acgcacgccc ttgtctttga aagcatttgc caggaggtta caaacattcg 1860 caagttctat gtatcagcca caccccgcga tggtaagaag tgtccagagg ccgtgcgcag 1920 atatgaaatc aaaactgtga aatctgagtg cagtagtgtc gacacttttg ttcgaagcca 1980 ggagaaaaca aactcgcttt acgttctcga acacgacacc gtcctcgttt ttctcgctgg 2040 aaaggccgag tgtgatagag cagcaagcaa ctggaacaag ctctactcaa ccaacatgta 2100 cgcctactct ctaacaggtg acaacttcac aatggcatat gagaagattg ttacagaaat 2160 gctcactaaa cgcaccatcg ttttctgcac gaacatcctg gaaaccggcg tcacccttaa 2220 cgtggactgc gttgtcgact tcggattcac tatgcgtccc gaactcgatc ttgttgataa 2280 atcgctaacc ttgatgcgac gccgagtcac cgagaacgag cgtgcacagc gcattggacg 2340 cgcaggaaga ctcagaactg gacacgcaat ctgtattggc aatcccgaaa cgcgccacga 2400 cttagtcccg ccagaaacac tctacgaagc agctcttctt agcttcgtgc acggcgtgca 2460 attctacatc aatgaacatt tcgaaaacgc ctggattgaa ggtgtcacaa aggctcaagc 2520 ctccgtcatg acacaattca aactttctcc tttcctcatg cgtgatattg ttcgcgacga 2580 tggtgcaata ccactatcac tccacaagat actcaaggat tacacacacc gcaataccga 2640 tctggtagga actaaactct ccgttatgtc acatgtttac aattcatggc ctctttaccg 2700 aacagtgcac caatccatct tccgtggaga ttccaatgtt ccacaaacgc tcagatatgc 2760 acgcgtcccc tttaatgtta gcactgctca cgattttcca tgggaagact tcgcacaggc 2820 gtgccttgaa ttccagccac gcgtccttca ggtcttcagt gacagcagca gcacttcgcg 2880 cataatcaac ctgcagattg ggaagatgca catcgtcaac tctatggaag aagttaagat 2940 aaacataaac agctaccagc gctccgcaga aaacctacgc tcagttaaag acagcttcga 3000 aagctcgatc ttccgaacaa aactgcttcg tggaaaccca actgggaaga taactaagcg 3060 catcgagact ctccttgaca acgtacgagt gctgcaacag atacatgcga aacttgagat 3120 gattgcatac tcaggtggag agaaaatcaa catggacaag aaatcagttg acgagctaaa 3180 tgagattgtc gaactccaga gcaaaaactc actcactgcc gaggaactgg cgcgcatatt 3240 gcacctgaca aaacccacct ccaccttctt caatctgttt gctgaacgtg gtcggcaaat 3300 gctcgtcact ctcctggtta tggttgccgc ctcactcatg tatctcgttt tctgggtttc 3360 tcccaggaaa caggacgaca ttaccattga ggggaaaggc agggcataca accgtgataa 3420 gcgcatgggg tacgactcct acgaggaaga cgaagttcgc aacaagatca acaagaagtt 3480 caaagagcgc agcacaaggt tctccaatga ctccaaaccg gaaacaagct cgaaataccg 3540 caatctgaag caagaatttg ttaacttcta tgatctcaaa accgatgcga acgtgctaca 3600 agccgtgttc actgcaatgg acggggccgt ccttcttcaa accgaaaatc caatggcaga 3660 cattggccac gtcaatagac tgctgcagga ccactttgaa gacagtgaga gccaggctgt 3720 gcatgagggc ctcaacacca tggtcaagtg ccacctaacg atgaaagatg gaagacagtt 3780 tgagctcgac atggaacaac acggtcccga aactgtcgcc aaacttgggg gcgaggttgg 3840 tttcagaatg aacagagacg acttacgtca agttggagcc acacgataca tcaacccaag 3900 agcacagaca tctgcagcga cgctcgaagg catgaccatg aaacccatga gttctttcac 3960 cattgacagc gcaaagatgg ttggcttcat caagaccgca aaagacacac tcaactgcat 4020 cctttacggc gactggatta tagctcctgc gcacatacag cagggcgagg gggacataac 4080 attcatcttc cagcacgtac aattcacgac cacaactgag cgtttggcta gctacggcat 4140 tcgacaattc aaaggtcttg accttgttgt catccggcgc cctcagcaga tacgcgcagt 4200 caagaaggac atgcgtgcta gcattctcga cacacccact gaaatacaaa tgctctactt 4260 gtccactaaa ggtggtaagt accaagtgtc cacgtccgct gtgtgctttc cacactacaa 4320 taaccgatgg ggacacgtca tttcaacagc agaaggcatg tgcggctgca ttgtgttcaa 4380 tcccaccacg aaccacatcg ttggaatcca cgtctcctac aacgacacgc gcagaagaaa 4440 tgagtttcaa gctttcacaa gtgacgttct gacaacgatt aatgcacccg gacacgagat 4500 acctttcagc ccatggatct tcgactggaa gttttgtggg tacacaacaa aaccacgaaa 4560 catgcaaagc gcaccgagca cactcgagcg actcaacatc aatgccacag gctttggttt 4620 caagctcgat gcacaggaga ttaagccagc catgcttcgt tccacagagt cgttctccag 4680 ggagtttcca gacacacagt ttaaactcat tggggaagtg aagaaaggac tcatcgacaa 4740 acacacaatc acaggagaga acccatactt ccttgaattc ctgaacacat tcaaaccata 4800 ccaatgggtg caggccttca tggacgagta cgcaccctcc atccttgcct atgatgcgta 4860 ttttaaagat ctgaagaaat atgataggcc accacacgca aatgttttct gtcaggacac 4920 attaaccaaa gctaaacaca agatgatcag catcctcgag gaagcaggca tgggaaggac 4980 cctagtacga accaccgagc aggtcttgct tgacatggcg tggaccacct ccggtggacc 5040 cttgtaccat ggtaagaaga tcgacattgt gcaacacttg tctgatgacg agcttgtaca 5100 gttcagtgag gcctgccaac aggctctcat cactggaacg ctggatggag tctggaacgg 5160 atcactcaaa gccgagctgc gctcttcgca gaaaatcctc gaacggaaaa cccgcgtttt 5220 cactgctgca cccataacga gcctcattgc gatgaaatat tacgtggatg atttcaacaa 5280 acagttctat aaaacccatc tcaaagcacc gcacacagtc ggcatcaaca agttcaaccg 5340 cggatggcag aatctgtatg agaagctcaa caaacctgga tggacgcatg ggagtgggga 5400 tggttccagg tttgacagtt ctattgatgg attccttttc gatgtcatca aggacattcg 5460 aaagcatttc atggacacgg aacatcacaa agaactcgac acaatctacg aagagattgt 5520 caacacgaag atatgtctgg cgaacggcct ggtcattcaa aagaattgcg ggaacaacag 5580 tgggcagcca agcactgttg tggacaacac actcgcactc atgaccgctt ttctctacgc 5640 atatgcccgg ctcactggag atcacgcctt cgaactcatg gacgaaaact tcattttcgt 5700 ctgcaatggt gatgacaaca agttttccat gtcacctagc ttcatggcga agtttggatg 5760 cgatttctcc ccattcctct ctgagctcgg gctaacctac gaattcgatg aagcaactga 5820 agacatctgc gaaaacccct acatgtcctt gacgatggtc cgcacctcgt ttgggattgg 5880 tttctctctc tccatcgagc gcatcgttgc aatcttgcaa tggagtcgcg ctggtggagt 5940 cctgcatgcc tatctctctg gcattgccgc tcttttcgaa tccttcaaca cacccaaact 6000 cttcaatctc gtgcacacat atctcctttg gctcgtcaca gagcacgagg aggaactctt 6060 ctccatgatg gaactcaaag acatgttcat gcccttgccc actagggaac aaatagcctt 6120 gctgcactac gttggaactg agcccatcgt ggaggaaaca tttctgcaag caggacacga 6180 agaaccagac cccatcgttc ccccggttcc cgacaccgat ctaacgaaca tggctgccgc 6240 accacccgaa aacagaagat cacgcgccgt catcccccgt ggaaccagtg actggagcct 6300 gcctgaaccc aaaatgcgaa cactgggttt caagtccaag atcaacatcg aaacacttgc 6360 caatgtcccc gacgggtata tgaacacctt tgcatccgtt gcaactgaat cgcaacgtag 6420 gaaatgggag gaggccgcac gtggcgattt cggcatcact gacgatgaga aatgggagaa 6480 gctgctcatt gctgcttgta tatatttcgc agacaatggc acctcaccga atttcgacga 6540 ggaactcact atggaggtca atggcggtct caactccatt aaagagtacc ccgttcgccc 6600 cttcgtcgtt agagccaaaa agatttctac gctgcgtaga atctttcgct gttactccat 6660 cgaaacgaag ctcatgttcg tgaagctgag gcgcgtgccg cactgggcca taaagcacgg 6720 atgcctcgat gagatcgtct ttgatttcat gatccccgac cagttcacct ctaggactgc 6780 gcttgaaaca ctaaagcaga ccaagcttgc tgccattggt gttggcacaa gcaattctct 6840 cctcacctcc gagcagacga acatgaggac cactgaaacc cgacggcgca atgactacga 6900 tggtcacgag gcgctcctcc ggtagatctc tcatgcactc acatttcctt ttaagcaatg 6960 catttcaata cgcttttaat tatatcaagc gtcaagaatt tctcccgctt gcagttaatc 7020 cttacagggt ggcactttgt gttatgcaat ggaaaattca gtgacgcaat caaccatcat 7080 tggttggtga caacgcagta ctttctttat ttcacatcaa gcgaccagca catcgcccgc 7140 ttacagctaa tcctacctga gggtggcact ctgtgttatg taatggaatg tgcaatctcg 7200 caaccaaccg tcattggttg atggtgcggc caacacccgc gctcttgtat accggaaagg 7260 tt 7262 //