ID AJ535913; SV 1; linear; genomic RNA; STD; VRL; 3400 BP. XX AC AJ535913; XX DT 02-JAN-2003 (Rel. 74, Created) DT 03-JAN-2003 (Rel. 74, Last updated, Version 2) XX DE Cucumber mosaic virus strain Ly2 genomic segment for 1a protein, genomic DE RNA XX KW 1a gene; 1a protein. XX OS Cucumber mosaic virus (cucumber mosaic cucumovirus) OC Viruses; Riboviria; Bromoviridae; Cucumovirus. XX RN [1] RP 1-3400 RA Jung H.J.; RT ; RL Submitted (27-DEC-2002) to the INSDC. RL Jung H.J., Division of Biological Environmant, Kangwon National University, RL chuncheon, Kangwondo, 200-701, SOUTH KOREA. XX RN [2] RA Jung H.J., Choi J.K.; RT "Determination of complete nucleotide sequence and construction of RT full-length cDNA Clones of Ly2-CMV RNA1, 2 and 3."; RL Unpublished. XX DR MD5; 3e1baae77e6d3a2248d74bc1616abca4. DR RFAM; RF01084; TLS-PK3. XX FH Key Location/Qualifiers FH FT source 1..3400 FT /organism="Cucumber mosaic virus" FT /host="Lilium longiflorum" FT /strain="Ly2" FT /mol_type="genomic RNA" FT /country="South Korea:Youngwol" FT /db_xref="taxon:12305" FT CDS 96..3077 FT /gene="1a" FT /product="1a protein" FT /db_xref="GOA:Q8B3M5" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR021002" FT /db_xref="InterPro:IPR022184" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q8B3M5" FT /experiment="experimental evidence, no additional details FT recorded" FT /protein_id="CAD59794.1" FT /translation="MATSSFNINELVASHGDKGLLATALVDKTAHEQLEEQLQHQRRGR FT KVYIRNVLGVKDSEVIRNRYGGKYDLHLTQQEFAPHGLAGALRLCETLDCLDSFPSSGL FT RQDLVLDFGGSWVTHYLRGHNVHCCSPCLGIRDKMRHAERLMNMRKIILNDPQQFDGRQ FT PDFCTQPAADCKVQAHFAISIHGGYDMGFRGLCEAMNAHGTTILKGTMMFDGAMMFDDQ FT GVIPELNCQWRKIRSAFSETEDVTPLVGKLNSTVFSRVRKFKTMVAFDFINESTMSYVH FT DWENIKSFLTDQTYSYRGMTYGIERCVIHAGIMTYKIIGVPGMCPPELIRHCIWFPSIK FT DYIGLKIPASQDLVEWKTVRILTSTLRETEEVAMRCYNDKKAWMEQFKVILGVLSAKSS FT TIVINGMSMQSGERIDINDYHYIGFAILLHTKMKYEQLGRMYDMWNASSISQWFAALAR FT PLRVFFSNVVQALFPTLRPREEKEFLIKLSTFVTFNEECSFDGGEEWDVISSAAHVATQ FT AVTDGKILAAQKAEKLAEKLAQPVREVSDSPETSSQTSDDTADVCGEEREVSELDSLST FT QTRSPITRVAERATAMLEYAAYEKQLHDTTVSNLKRIWNSAGGDDKRNSLEGNLNFVFD FT TYFSVDPMVNIHFSTGRWMRPVPEGIVYSVGYNERGLGPKSDGELYIVNGECVICNSES FT LSAVTRSLQAPTGTISQVDGVAGCGKTTAIKSIFEPSTDMIVTANKKSAQDVRMALFKS FT SDSKEACAFVRTAESVLLNECPTVSRVLVDEVVLLHFGQLCAVMSKLQAVRAICFGDSE FT QIAFSSRDASFDMRFSKIIPDETSDADTTFRSPQDVVPLVRLMATQALPRGTHSKYTKW FT VSQSTVRRSVTSRAIASVTLVDLDSSRFYITMTQADKASLISRAKEMNLPKTFWNERIK FT TVHESQGISEDHVTLVRLKSTKCDLFKQFSYCLVALTRHKVTFRYEYCGILNGDLIAEC FT VARA" XX SQ Sequence 3400 BP; 851 A; 763 C; 825 G; 961 T; 0 other; gttttattta caagagcgta cggttcaatc cctgcctccc ctgtaaaact accctttgaa 60 aacctctctt tcttaatctt ttctttgtaa ttcctatggc gacgtcctcg ttcaatatca 120 atgaattggt agcctcccac ggcgataaag gactactcgc gaccgccctc gttgataaga 180 cagctcatga gcagctcgag gagcaattac agcatcaacg tagaggccgt aaggtctaca 240 tccgaaacgt tttgggtgta aaggattccg aggtcatccg gaatcggtat ggaggaaagt 300 acgacctcca tcttacccag caggagtttg ctccccacgg cctagctggt gccctccgct 360 tgtgtgaaac tctcgattgt ctagactctt tcccttcatc aggtctgcgg caagacctcg 420 tcttagactt cggaggaagt tgggtcacac attacctccg cggacataac gtacactgct 480 gttccccttg tttgggtatc cgcgataaga tgcgccatgc ggaacgttta atgaacatgc 540 gcaagatcat cttgaacgat ccacaacagt tcgatggtcg acagccggat ttctgcactc 600 aaccggctgc ggattgcaaa gtacaagccc actttgctat atctattcat ggaggttatg 660 atatgggctt tagaggatta tgtgaagcga tgaatgctca cggaaccact attttgaagg 720 gaacgatgat gttcgatggt gcgatgatgt ttgacgacca aggtgtaata cccgaactta 780 attgtcagtg gaggaagatc aggagtgctt tctccgaaac tgaagacgtc acgccactgg 840 ttggtaagct taattccaca gttttctccc gcgtgcggaa gttcaagacg atggtagctt 900 ttgatttcat caacgagtct actatgtcct atgttcatga ttgggagaat ataaaatctt 960 ttcttacgga ccagacttat tcgtaccgag ggatgactta cggtattgaa cgctgcgtaa 1020 ttcacgctgg tattatgacg tacaagatta tcggcgtacc tgggatgtgc ccgcccgaac 1080 tcattcgaca ttgtatttgg ttcccctcta ttaaagacta tattggtcta aagattcccg 1140 cgtcgcagga cttggttgag tggaaaacag tgcgtatttt gacgtcaaca ttacgtgaga 1200 ctgaagaggt tgccatgagg tgttataatg ataagaaagc gtggatggaa caattcaagg 1260 ttatcctagg tgttctatcc gcgaaatcat ctaccattgt cattaatggt atgtccatgc 1320 aatctggcga gcgaatagat attaatgact atcattacat cggtttcgcc attcttcttc 1380 acacaaaaat gaagtatgaa caacttggaa gaatgtatga tatgtggaat gcctcgagta 1440 tctcgcagtg gttcgccgcg ctggctcgtc cgctgcgtgt gtttttctcc aatgttgttc 1500 aagcactgtt cccgactttg agaccccgcg aggaaaaaga attcctgatc aagctctcca 1560 ccttcgtgac ttttaatgaa gagtgctcat ttgacggtgg agaggaatgg gacgtgatat 1620 catccgccgc acatgttgct acgcaggctg ttaccgatgg gaaaattttg gctgcgcaga 1680 aagccgagaa gcttgctgaa aagctcgcac aacccgtgag agaggtatcg gacagtcctg 1740 agacgtcatc tcaaacgtct gatgataccg ctgatgtttg tggagaggag cgagaggttt 1800 cggaactcga ctccctatca actcagacac gttcccccat cactagagtt gctgaaagag 1860 ctactgccat gttggagtat gccgcttatg agaaacaatt acacgacacc acagtgtcta 1920 atttaaagcg tatttggaat tcggcgggcg gtgatgacaa aagaaactcc ctcgagggta 1980 atctgaattt tgttttcgat acgtattttt ccgttgatcc tatggtgaac attcatttct 2040 ccacgggtcg gtggatgcgt cctgtgcccg agggtattgt ttattctgtt ggttataatg 2100 aacgcggttt aggtccgaag tctgatggag agctttacat tgtcaatggt gaatgcgtga 2160 tttgtaacag tgagtcttta tctgctgtca cgcgttctct tcaagctcca accgggacca 2220 ttagtcaagt tgacggagtt gctggttgcg ggaaaaccac ggcaattaaa tccatttttg 2280 agccgtccac tgacatgatc gttaccgcga acaagaagtc cgcccaagat gtacgcatgg 2340 cacttttcaa atcgtcggac tccaaagaag cttgcgcctt tgttcgaaca gccgaatctg 2400 tcctacttaa tgaatgtccg actgttagta gggttttggt tgatgaggtc gttttgctac 2460 actttggtca attatgtgcc gtcatgtcta agttgcaggc tgtgagagct atatgttttg 2520 gggattcgga gcagattgct ttttcctcac gagatgcctc atttgacatg cgtttctcta 2580 agatcattcc tgatgaaact agtgatgctg acaccacatt ccgtagccca caagatgttg 2640 taccgcttgt gcgtttaatg gctacgcagg cccttccgag aggaacccat tcaaaataca 2700 cgaaatgggt ttctcaatct acagtgagaa gatctgttac atctcgtgcc atcgctagtg 2760 tgacattggt tgacttggat tcttccaggt tctatataac aatgacccaa gctgataagg 2820 cctcactgat ttcaagggcg aaagagatga atctaccaaa gactttctgg aatgaaagga 2880 ttaaaaccgt acatgagtct caaggtatct ctgaagacca tgttactttg gtaagattaa 2940 agagtacaaa atgtgacctg tttaaacagt tttcttattg tctcgttgca ttgacgagac 3000 acaaggtcac attccgctac gagtactgtg gtatactgaa cggcgattta atcgccgaat 3060 gtgttgctcg tgcgtagcgg tctcacttct gctggtgaga ccgaccctcc ctccgactgt 3120 ggcgggagct gagttggcag tattgctgta aactgtctga agtcactaaa cacagtgtgt 3180 cactgtacac attgtggtga acgggttgtc catccagctt acggctaaaa tggtcagtcg 3240 tggagaaatc cgcgccagta gacttacaag tctctgaggc acctttgaaa ccatctccta 3300 ggtttcttcg gaaggacttc ggtccgtgta cttctagcac aatgtgctag ttcagggtac 3360 gggtgtcccc cactttcgtg gggcctccat aaggagacca 3400 //