ID AJ534983; SV 1; circular; genomic DNA; STD; ENV; 7242 BP. XX AC AJ534983; XX DT 13-JUN-2004 (Rel. 80, Created) DT 22-JAN-2005 (Rel. 82, Last updated, Version 3) XX DE Cacao swollen shoot virus ORF1, ORF2, ORF3, ORFX and ORFY, complete genome XX KW nucleic acid-binding protein; ORF1; ORF2; ORFX; ORFY; polyprotein. XX OS Cacao swollen shoot virus OC Viruses; Ortervirales; Caulimoviridae; Badnavirus. XX RN [1] RP 1-7242 RA Muller E.; RT ; RL Submitted (12-DEC-2002) to the INSDC. RL Muller E., CIRAD, UMR BGPI, TA 41/K, Campus International de Baillarguet, RL 34398 Montpellier cedex 5, FRANCE. XX RN [2] RA Muller E., Sackey S.; RT "Molecular variability analysis of five new complete cacao swollen RT shootvirus genomic sequences"; RL Arch. Virol. 50(1):53-66(2005). XX DR MD5; b2f4e97460b586f8c94f03107c051553. DR EuropePMC; PMC5649073; 29052506. XX FH Key Location/Qualifiers FH FT source 1..7242 FT /organism="Cacao swollen shoot virus" FT /host="Theobroma cacao" FT /environmental_sample FT /mol_type="genomic DNA" FT /country="Togo:Nyongbo" FT /db_xref="taxon:31559" FT CDS 442..873 FT /product="hypothetical protein" FT /function="unknown" FT /note="ORF1" FT /db_xref="InterPro:IPR010746" FT /db_xref="UniProtKB/TrEMBL:Q6KF19" FT /protein_id="CAD59230.1" FT /translation="MSSRWENSIQEWYEKSHTANLEYLDLASTSKVTNNQLAHNLAVTF FT DRVNLGNRVLIKNLKQIQESILELNTRVDTIEVALRRLTKTFRENKPLTESEVRKLVEE FT IAQQPKIVEKQALEISQQLEQKLEKVEKLLHKLDQWVGQ" FT CDS 870..1307 FT /product="nucleic acid-binding protein" FT /note="ORF2" FT /db_xref="UniProtKB/TrEMBL:Q6KF18" FT /protein_id="CAD59231.1" FT /translation="MTDSPAYQEALKEAEKVDPPAVGITTSTGVTAVQGFKTVIKQNNV FT QICLLAVIADKLEELIQDQKKARKDKAKEVSIPEDLITKLQGLSIQEKGEAKVTRKPEP FT KGTLFGFKDPYKILAAEKAKVTPKPVKEKKDESSTTATPNS" FT CDS 1273..6792 FT /product="polyprotein" FT /db_xref="GOA:Q6KF17" FT /db_xref="InterPro:IPR000477" FT /db_xref="InterPro:IPR001878" FT /db_xref="InterPro:IPR002156" FT /db_xref="InterPro:IPR018061" FT /db_xref="InterPro:IPR021109" FT /db_xref="InterPro:IPR036875" FT /db_xref="InterPro:IPR041373" FT /db_xref="UniProtKB/TrEMBL:Q6KF17" FT /protein_id="CAD59232.1" FT /translation="MSRARPQHPIPSVTTTTSERNREGPLYEDQIRDYRRGQRRIFNLQ FT RRARRLRRSMMGSRYQETLEQEIDPQTTLRLSMQERARLVPAEVLYRSRRDTVHHRVYT FT HRSEESVLCVGGSQVDRAFIQPESLEQLQRTGMSFIHIGILQVRIQILHRQEEGTMALV FT VFRDNRWSGDQSIFAQMEIDLTKGSQLVFVIPDTMMTIGDFARNVQLSILTRGYENWQN FT GEANLLITRGMTGRLSNTPNVAFAYQIASATDYLASHGVKAIAGKKMNLQHLRNQQWIL FT RPPQTDITPMQPRSVETRNLVDGSISIRFHDYEAATSASRPHYNEEDEEVESETESEIR FT EHTIAVWIGEEEIPDQTGKKKVWEESSNGNGRFFWYYTPPPTFEGQIIATGWGSDNDDE FT KTPPKWDESSDEEGPTEPIWDQEEEEDEYDPNVYRAYLQKEEDEWQEITASLREEMEYP FT KRRPQTETAFSETVDYTPPGDTMMTPVGYPPASSSRSTVTTPSRPPLFEGRTTHVPRFL FT KRDEYTEWWQLPSSQGTTGALFVMPKQMGLFHEVFSRWESITKNYVAAQGFTDPTEKME FT FMENLLGETEKLTWIQWRMNYEAEYQQLLTQADGRQGTQNILSQIKRVFSLEDPASGST FT RIQDAAYRDLERLTCHNIKDIVQFLNDYGRLAAKSGRLFLGTELSEKLWMKMPPELGHR FT MKEAFQKEYSGNEVGVFPRILFAYRYLEQECKDAAFKRSLKSLSFCKDMPLTGYYDKTS FT KYGMRKSRTYKGKPHASHARVEKRKHLIRNKKCKCYLCGDEGHFARECPNQRRDVKRVA FT IFEGIDLPEGFDIVSVEEGEEESDAIYSISENEDGELDTEAVHEKVFVMREEDQSYWLG FT KTNHWTAMVRVSSQQYHCMHQWEHNKEILVVAHINCHFCKQPTQLRSRIHCPTCQLTSC FT FMCAPIYCNIMVQQQPKPPVPFNSHTLLQQQAAYIQWLEKENQRLTEAVEFYKKEAEEL FT RLERDLEQDRRSLEPTLLNKGKKVQILDPESPDEDQYTAYLEEDTISRVIGHTVEQQEV FT RKPVKKGNMLYNLDVVLHIPEVGRPIKVKAILDTGATTCCININSVPQTAIEQNTFLVQ FT FRGINSTQSVDKKLKYGRMTISNHQFRIPYCYAFPLSLGDGIEMILGCNFIRGMYGGLR FT IEGHTITFYKNVTTIQTRLAAVMVGGTTASELGGGEESKSESDSESMFDLSETEEFDSE FT THQQIVSHVAAQAQQQKLDPKLQQLMVQLQDQGFIGENPMQHWAKNKILCRLDIKNPDL FT VIEDKPIKHLTPAMEKQFQKHIKALLDIGVIRPSKSKHRTTAFIVESGTVIDPVTKKTI FT HGKERLVFNYKRLNDNTEKDQYSLPGIQTILKRVGNKKIFSKFDLKSGFHQVAMAEESI FT PWTAFWVPQGLYEWLVMPFGLKNAPAVFQRKMDQCFKGTEEFIAVYIDDILVFSENMAE FT HTKHIGIMLKICQENGLVLSPSKICLAQREIEFLGTVISQGQMKLQAHVIKKIVNKANM FT ELETTKGLRSFLGLLNYARIYIPNLGRKLSPLYAKTSPTGEKRFNRQDWHLIKEIKDMV FT QKLPDLAIPPARCCIIIESDGCMEGWGAVCKWKLAKEDSRTTEKICAYASGKFGVVKST FT IDAEIYALIKALESFKIFYLDKKHLVVRTDCQAIVTFYNKTSTHKPSRIRWITFSDYIT FT GLGVQVTIEHIDGKENQLADTLSRLVYTTWNQSQTHQPEEEELEKSQHLSFAGLAIPIA FT WPMMGSYNKRRTPLLTGQSLWQRNKPSQHSSTVLKSRQPRKHYWPYVTYRAYSTSRETI FT WPLLPLETTGLAIDCQLSDKTQPP" FT CDS 2375..2716 FT /product="hypothetical protein" FT /note="ORFX" FT /db_xref="UniProtKB/TrEMBL:Q6KF16" FT /protein_id="CAD59233.1" FT /translation="MEMEDFSGITLLHQHLKGKSLLRDGEVIMMMKKLLQNGMKVQMKK FT DPQNPYGIKKKKKMNMIPMSIGHTYKRRKMSGKKSQLVSGKKWSTQKDDHKQRRRSLKQ FT STILHLATP" FT CDS 6450..6845 FT /product="hypothetical protein" FT /note="ORFY" FT /db_xref="UniProtKB/TrEMBL:Q6KF15" FT /protein_id="CAD59234.1" FT /translation="MEPVPNSPTGGRRAGEVPTSQLRGASYPYSLAYDGLLQQKKDAIT FT HGTITLATEQAISAQLYRIEEQAAKKALLALRDLQGVLHFKRDYLAATATRDNWASDRL FT PAVRQDSAALDQHAGVIDAIIERAVQP" XX SQ Sequence 7242 BP; 2434 A; 1537 C; 1650 G; 1621 T; 0 other; tggtaccaga gcaaggttaa acatggccat gtcaggctaa aaacctagtg ttaggttcgg 60 ggaaagaggt ctactgtgtg tttcaaatat ccatttgtta ttctcctaac agtgtctgtt 120 ccttgtgttt aggctggaaa cctgaggttg cgaactacgt gttcaaagga gtgatcattt 180 caaaaggaat gtcgttctaa ctatcgtatg ctctagactt gccctgttat aacaacagag 240 gatcctgtct atcagaaaat agtttgaaca attccgatga tctctcatac tttaggtata 300 acaacgccac gtataaggag ctaattcttt tgtaaaagac gtaacccaga agagagtacc 360 cagagagggg gaagacttgg ggagaaggtg aacagaagag agagcttact atacctggta 420 ctgttatagg gagattttgg tatgtccagt cgctgggaga atagtataca agagtggtat 480 gagaaatcac acacagcaaa ccttgagtac cttgacctag catctactag taaagtgacc 540 aacaaccagt tagcacataa ccttgcagta acctttgata gagtaaattt aggtaaccga 600 gttcttatta aaaacctgaa gcagattcaa gagtctatcc ttgaattaaa cacccgtgtt 660 gatactatag aagtagctct aaggaggtta accaagacct tcagagaaaa caaaccactt 720 accgaaagtg aagtccgtaa gttggttgaa gaaattgctc aacaacctaa gatcgtcgag 780 aaacaagcac tcgagatctc tcaacaactt gagcagaaac tagaaaaggt ggaaaagctc 840 ttgcacaaac ttgaccagtg ggttggtcaa tgactgatag cccagcctat caggaagcgt 900 taaaggaagc agaaaaggtt gacccaccag cagttgggat aacaacctcc actggagtaa 960 cagcggttca agggtttaaa accgttatta agcagaacaa cgttcagatc tgcttactcg 1020 ctgtcatagc agataaacta gaagagctga tacaggatca gaagaaggcc aggaaggata 1080 aggcaaagga agtgtccatt ccagaagact taatcacaaa actccaagga ttatctatcc 1140 aggagaaagg agaagcaaaa gtcacaagaa aacctgagcc aaaaggaact ctgtttggat 1200 tcaaagatcc ttacaagatc ctagcagcag aaaaggctaa ggtcacacct aagcctgtga 1260 aagaaaagaa agatgagtcg agcacgaccg caacacccaa ttcctagtgt gactacaacc 1320 actagtgaac gaaacaggga aggacctcta tacgaggatc agatcagaga ctaccgaaga 1380 ggacaaagaa ggatctttaa ccttcaaaga agagccagaa ggttaagaag atcgatgatg 1440 gggtctagat atcaagagac cctagaacaa gaaatagatc cacagacaac actgaggttg 1500 tccatgcaag aacgagcaag actagtacca gctgaggtac tgtacagatc taggcgagac 1560 actgttcatc acagagttta tacacaccga tctgaagagt cagtcctatg tgttggcgga 1620 agccaagtgg atagggcgtt tatacagcct gaaagtctgg aacaactcca aaggacagga 1680 atgtccttta ttcatatcgg aattctgcaa gtgaggattc agattctgca ccgacaagaa 1740 gaaggcacca tggccttggt tgtattcagg gataacagat ggtcgggaga tcagtctatt 1800 ttcgctcaaa tggaaataga cctaacaaaa ggaagccaat tggtgttcgt tataccagac 1860 accatgatga ccatcggaga ctttgcccga aacgtacagc tatccatcct cacaagaggg 1920 tatgaaaatt ggcagaacgg agaagctaat ctcctgataa cacgtggcat gacagggcga 1980 ctatccaaca ctcccaatgt agcctttgct taccaaattg ccagcgcaac agattacctg 2040 gcaagccacg gtgtaaaagc tatcgcagga aagaaaatga atctgcaaca cctgcgaaac 2100 caacagtgga tactacgtcc accacagacg gacatcactc caatgcaacc aagatcggtt 2160 gaaacaagaa atctcgtaga tggaagtatc tccatcagat tccatgatta tgaggcagct 2220 acttcagctt caagacctca ctacaatgag gaagatgaag aagtggaatc agaaacagag 2280 tcagaaataa gggagcatac tattgcagtt tggataggag aagaagaaat tccagatcag 2340 acagggaaaa agaaggtatg ggaagaatct agtaatggaa atggaagatt tttctggtat 2400 tacactcctc caccaacatt tgaagggcaa atcattgcta cgggatgggg aagtgataat 2460 gatgatgaaa aaactcctcc aaaatgggat gaaagttcag atgaagaagg acccacagaa 2520 cccatatggg atcaagaaga agaagaagat gaatatgatc ccaatgtcta tagggcatac 2580 ttacaaaagg aggaagatga gtggcaagaa atcacagcta gtctcaggga agaaatggag 2640 tacccaaaaa gacgaccaca aacagagacg gcgttctctg aaacagtcga ctatactcca 2700 cctggcgaca ccatgatgac acctgtcgga taccccccgg cctcgtcatc aagatcaaca 2760 gtcacaacgc caagtagacc gccacttttt gaaggaagga ccacacacgt gccacgattc 2820 ctaaaaaggg atgagtacac agaatggtgg caattaccat catcgcaagg cacaacaggg 2880 gcgttatttg tgatgcctaa acaaatgggc ctattccatg aagtcttctc gagatgggaa 2940 tctatcacca aaaactacgt tgcggcccaa ggttttacgg acccaacaga aaaaatggag 3000 ttcatggaaa atctgttagg agaaacagaa aagctaacct ggatccaatg gagaatgaat 3060 tacgaggctg aataccagca gctgctaacc caagcagatg ggcgacaagg aacccaaaat 3120 atcttgtccc agatcaagag agtcttttct ttagaagacc cagcctctgg atccacgaga 3180 atacaagatg ctgcatacag agacctggag agattaacct gccacaacat aaaagacata 3240 gttcaatttc taaatgacta tggaagactt gcagcaaaga gtgggcgact gttcttagga 3300 actgagctca gtgaaaagtt atggatgaag atgccaccag aactagggca tagaatgaaa 3360 gaagcatttc aaaaggagta ttcaggcaat gaagtaggag tcttcccgcg catcttgttt 3420 gcctaccgat atctggagca agagtgtaaa gatgcagctt ttaagagaag cctgaagtca 3480 ttaagcttct gcaaagacat gccattaaca ggatactatg ataaaacctc caagtatggc 3540 atgagaaagt caagaactta taaaggaaaa ccacatgcat cacatgcaag ggtggagaag 3600 aggaagcact tgatcagaaa taaaaagtgc aaatgttatc tctgcgggga tgaaggacac 3660 tttgcccggg aatgccccaa tcagaggaga gatgtcaaga gagtagccat ttttgaagga 3720 attgatcttc ctgaaggctt tgatatcgtc tcagtagaag aaggagaaga agagtcagat 3780 gctatttata gcatatctga aaatgaagac ggagaacttg acactgaagc agtccatgag 3840 aaagtcttcg tgatgagaga agaagaccag tcctattggt taggaaagac aaaccattgg 3900 acggctatgg tgcgagtcag cagtcagcaa tatcactgca tgcaccaatg ggagcacaat 3960 aaagaaatat tagtggtggc ccacatcaac tgccacttct gtaagcaacc cacccagtta 4020 aggagtcgaa tacactgtcc cacgtgtcaa ctcaccagtt gcttcatgtg tgccccaata 4080 tactgcaata taatggtcca gcagcagcct aaaccaccag taccgtttaa tagtcacaca 4140 ctgctccaac aacaagcggc ttatatccag tggttggaaa aagaaaatca gcggttaact 4200 gaggccgttg aattctataa aaaggaggct gaagaattaa ggctcgaaag agacttagag 4260 caagatagaa ggagtctgga acctacgttg ttaaacaaag gaaagaaggt tcagattctt 4320 gatccagaat cacctgatga agatcagtac acagcgtatc ttgaagaaga taccatcagc 4380 cgtgttatcg gccatactgt ggaacagcaa gaggttagaa agcccgttaa aaagggaaac 4440 atgctctata acctcgatgt ggtgttacat atcccagagg taggaagacc tatcaaagtc 4500 aaagcaattc tagacactgg agcaaccaca tgctgtataa acatcaactc tgtaccacaa 4560 acagcaattg aacagaacac ttttctggta caattccgag gcataaattc cacgcaatct 4620 gtggataaga aactcaaata tgggaggatg actatcagca atcaccagtt cagaatcccg 4680 tactgttatg cctttcctct gtcccttggt gatggaatag agatgatcct agggtgtaat 4740 ttcatccgtg ggatgtatgg cggcttgcgt atcgaaggtc acacaatcac cttctacaaa 4800 aatgtcacta caatccaaac ccgccttgct gccgtaatgg ttggtggtac aaccgcttct 4860 gagttagggg gaggggagga gtccaaatcc gaatccgact ctgaatccat gtttgacctc 4920 tcagaaacag aagaatttga ctcagaaacc caccagcaga ttgtgagtca tgttgcagcc 4980 caagcccaac aacaaaaatt ggatccaaaa ctccaacaac taatggtcca acttcaggat 5040 cagggcttca ttggggaaaa tcctatgcaa cattgggcta aaaacaagat cctatgtcga 5100 ctagatatca agaatcccga tcttgtaata gaagataagc ccatcaagca tctaacacca 5160 gccatggaga aacagttcca gaagcacatc aaagcactcc tggacattgg tgttatcagg 5220 cctagtaagt caaaacacag gactacagcc ttcattgtgg aatcaggcac tgttattgat 5280 ccagtcacga aaaagactat acacggtaaa gaacgtttgg tcttcaacta caaacgcctg 5340 aacgacaaca ctgaaaagga ccagtactcg ctacccggta tacagaccat cctaaagcga 5400 gtgggcaaca agaagatctt cagcaagttc gatctaaaat cgggcttcca tcaagttgcc 5460 atggcggaag agtccatccc ttggactgct ttctgggtac cgcagggcct ttatgaatgg 5520 ttagtgatgc cctttgggct caaaaacgct cctgcagtat ttcaaagaaa aatggaccaa 5580 tgcttcaaag gtacagaaga attcatagca gtgtacattg atgacatttt ggtcttcagc 5640 gaaaatatgg cagagcacac caagcacatt gggatcatgc tcaaaatctg ccaagagaat 5700 gggctggtac taagcccaag taagatatgt cttgcccaac gtgagattga atttttgggc 5760 acagtcatct cacaaggaca aatgaagctt caggcccatg taatcaaaaa gatagtcaac 5820 aaggccaaca tggagctgga aacaacaaaa ggcctgagat cctttttggg cctcctcaac 5880 tatgcccgta tttacatacc caacctgggt agaaagctaa gtccactata tgccaagact 5940 agtcccaccg gagagaaaag gtttaatcga caagattggc atctgataaa ggaaatcaaa 6000 gatatggtcc aaaagctccc agacctcgct atcccaccag caagatgctg cattatcatt 6060 gaaagcgatg gctgcatgga aggatggggg gccgtatgta agtggaaatt agcaaaagaa 6120 gattcccgaa ctactgaaaa gatttgtgcg tacgctagtg ggaaattcgg tgttgtcaaa 6180 tctaccatcg acgccgaaat ttacgcactc ataaaagcat tggaatcttt taaaatcttc 6240 tatctggaca aaaaacattt ggtggtgcga acagactgtc aagcgatagt gacattttac 6300 aacaagacaa gcactcataa acccagtaga atacgttgga tcaccttttc cgactatata 6360 acggggttag gagttcaagt tactatcgaa cacatagacg gaaaggagaa ccagttggct 6420 gatacactaa gcagactcgt gtatacaaca tggaaccagt cccaaactca ccaaccggag 6480 gaagaagagc tggagaagtc ccaacatctc agcttcgcgg ggctagctat ccctatagct 6540 tggcctatga tgggctccta caacaaaaga aggacgccat tactcacggg acaatcactc 6600 tggcaacgga acaagccatc tcagcacagc tctaccgtat tgaagagcag gcagccaaga 6660 aagcactatt ggccctacgt gacctacagg gcgtactcca cttcaagaga gactatttgg 6720 ccgctactgc cactagagac aactgggcta gcgatagact gccagctgtc cgacaagact 6780 cagccgccct agaccaacat gctggcgtga ttgacgccat tattgaaagg gctgtccaac 6840 cctagtttgg acggtagtag taggtgtaat agtaataatt aggtgtgctt tacttttcca 6900 agctgtcact ttggacggta gtagtaggtg taaaagtaat aattaggtgt gctttacttt 6960 tccaagctgt cactcattat agagtagaca tgatgatcga cgatggggcc caatgagcac 7020 ccggatcacc attctcccat ctataaatga gagtttgtaa ggcttagcca tcagagagtg 7080 aaaactactc aactgatcct aagtactaga gtttgtattt cctaagagtt tgtaagattt 7140 tcttatgaaa taaagagtct actttgtgtt tatctctttg tttcacctgg gatttaaaca 7200 gtttttgttt ttccgcacca tcggtttgcg cccgatctat at 7242 //