ID AJ517478; SV 1; linear; mRNA; STD; VRL; 4420 BP. XX AC AJ517478; XX DT 11-SEP-2003 (Rel. 77, Created) DT 19-SEP-2003 (Rel. 77, Last updated, Version 2) XX DE Barley yellow mosaic virus partial gene for polyprotein, genomic RNA1, DE isolate GB, strain 2 XX KW 14 kDa protein; 7 kDa protein; CI protein; NIa protien; P3 protein; KW polyprotein; VPg protein. XX OS Barley yellow mosaic virus OC Viruses; Riboviria; Potyviridae; Bymovirus. XX RN [1] RP 1-4420 RA Kanyuka K.; RT ; RL Submitted (19-NOV-2002) to the INSDC. RL Kanyuka K., Plant-Pathogen Interactions Division, Rothamsted Research, RL Harpenden, Hertfordshire, AL5 2JQ, UNITED KINGDOM. XX RN [2] RX DOI; 10.1099/vir.0.19347-0. RX PUBMED; 13679620. RA Kuehne T., Shi N., Proeseler G., Adams M., Kanyuka K.; RT "The ability of a bymovirus to overcome the rym4-mediated resistance in RT barley correlates with a codon change in the VPg coding region on RNA1."; RL J. Gen. Virol. 84(Pt 10):2853-2859(2003). XX DR MD5; 08ce8082c2da322c62c5898e2517ec00. XX FH Key Location/Qualifiers FH FT source 1..4420 FT /organism="Barley yellow mosaic virus" FT /host="Hordeum vulgare" FT /strain="2" FT /isolate="GB" FT /mol_type="mRNA" FT /country="Germany:Gatersleben" FT /db_xref="taxon:12465" FT 5'UTR <1..25 FT CDS 26..>4420 FT /product="polyprotein" FT /note="RNA1" FT /db_xref="GOA:Q70WG4" FT /db_xref="InterPro:IPR001650" FT /db_xref="InterPro:IPR001730" FT /db_xref="InterPro:IPR013648" FT /db_xref="InterPro:IPR014001" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q70WG4" FT /protein_id="CAD57012.1" FT /translation="MEQTLAQAVSRRGKTNTPTAEERKPFSPMNFSANFVAPELFYSAN FT VRKIKNIFRERSTTRFLDAISSDFELVAFLTLSPAHLMQLETTLRQEIRSCVVPIVTSD FT ASFETVAVIKTALDGMRFHFGHTTLEKGWMSMMRHAESCLQESSSSAVNDLQMQIKRVG FT SLLLSGKNRVESCELSVLNLTARRFRIEYGLNGTYFGEHVAMLFDLKRYIYGTVPKEFL FT WAKTKKHSLFTTPEWIKRTPIDCFLFCLRVIPILHRFGVAISLLYWSCVAALNFPAFMA FT FLFKRQFAKYLAHSFAKHSIYFIFLTIIAILWSFRTFASQKPKIVLQARSTAEKEKKLM FT MILASVVGITYLFDYDIAETLGNCLHKISRLSSYLLDDHQGIASRMFGASYGLQAGDSA FT EDAVTTIISDLLSVTFKIVDEDASQGTVEDASETTFHSWVGVNTLAGRNMSRPLQYDVN FT KTYALTPQNVQLQARAMADANNCWSMVVGHTGSGKSTYLPVQYSNYLSTKSDRRQQILI FT CEPTQAATENVCAGVAANLGRAVYGRHEGRSRMGDHCIQVMTYGSALQCHAMDPSFIST FT FDAIFLDEAHDVKEHSLVFESICDTFKSVRKFYVSATPRDGSVCPEAARKYPLHVETSV FT CDSYRKFIAAQGGGDLLDISKHDTALVFLAGRPECIKAANAWNASVTGEKRAFSLSSDN FT FATDFSMLTERLKTHKTIIFTTNIIETGVTLSVDCVVDFGHTMRPCLDLNQKSLRLDRR FT RVTRNERQQRIGRAGRLKDGYAIVCGDVDKAVNVISPDVLYGAALLSFKHNVPFYMNET FT FESSWLEGVTKAQADTMTIFKLPIFLTRDLINADGSVAREFLDVLKKHQFTTSDIKQAP FT SVTAKHIFPTWASYFSLHQALHYGDDKDEIPHELRYARVPFSVTTLSKFDWPALALACE FT KHRASMSNVFAGIEEPARVVTLQTNPANIQASITHLTHMSKNYKTLIENNQHVRQSMMT FT NVMFKWFSSTRITKDLDRNLRRCTDNLSVVEATLSSLRQILAGNTQVHATPHMQSTLED FT IIELQASDTLTEESLANALGIFVPKCNLFLLLATKGFKLVYVVCILLLVNLVYTGLRKW FT REHLKQKGSDEILTNTMPVSEGGEILAEVMKMEPKMRKNIKRDMDAAVESKLCGFTFVF FT PDDDKIGLEGKGNKYRPREDARLMYSTREDATFDAWNEKAKERRKKVTDKAEPELRRAY FT EKRPYFNFYDLQTDSNILEAIFYTTEGDEFFRTADPNKDMNLVADKLRSFLDTKLVVGH FT HQRKLLEETAAVVIRDTKGTVHNMEISQHDPDFLKQNGSGKVGYPEHRGQFRQEGVAIT FT ADYDLEAEFGADTDEITLEASTGILLSQVGVDVATRVGRICIGTFNMNCYFYSDWILVP FT GHLQDRSGNVTIQFPDQTVQTTTDALNANGVKRFYGLDVIAIRRPAALRPRTKLVKAFA FT IEEP" FT mat_peptide 26..1039 FT /product="P3 protein" FT mat_peptide 1040..1207 FT /product="7 kDa protein" FT mat_peptide 1208..3184 FT /product="CI protein" FT mat_peptide 3185..3550 FT /product="14 kDa protein" FT mat_peptide 3551..4111 FT /product="VPg protein" FT mat_peptide 4112..>4220 FT /product="NIa protein" XX SQ Sequence 4420 BP; 1222 A; 1006 C; 1001 G; 1191 T; 0 other; ctccttcacc ttcactctcg ctcttatgga gcaaacccta gctcaagctg tgtcacggag 60 aggtaaaaca aacacaccta cggcagaaga gcggaaacct ttcagcccca tgaatttttc 120 cgcaaacttt gttgctcctg agctctttta tagtgctaat gtgaggaaaa ttaaaaatat 180 cttcagagag cgcagcacaa ctcggtttct ggatgcaatt tcaagtgatt ttgagctcgt 240 tgcttttctc actttgagtc ccgctcactt aatgcaactt gagacaactc tgcgccaaga 300 aatacgttcg tgtgttgtgc caattgttac ctctgatgct agcttcgaaa cagttgctgt 360 catcaaaact gctctggatg gcatgagatt tcactttgga cacaccactc ttgaaaaggg 420 gtggatgtcc atgatgcgcc atgcagagag ttgcctgcaa gagagctcct cttcggctgt 480 gaatgatctg cagatgcaga ttaaacgcgt tggatcattg ctcttgagtg gaaaaaatcg 540 cgtagaaagc tgcgaactat ctgtcttgaa cctcacagcg cgacgtttca ggatcgaata 600 tgggctaaat ggtacatact ttggcgaaca tgttgctatg ctattcgact taaagcgtta 660 tatctatggt accgtgccaa aagagttttt gtgggcgaaa accaaaaagc actcgctatt 720 cacaaccccc gagtggatca agcgtacgcc catcgactgt ttcttgttct gtcttcgcgt 780 tatccctatc ttacataggt ttggtgtggc catatcactc ctttactggt cgtgtgttgc 840 tgctctgaat tttcctgctt ttatggcttt cttatttaag cgtcagtttg ctaagtattt 900 agctcactct tttgctaaac actccatcta ctttatattt ttaactataa ttgctatttt 960 atggtctttt cgcacttttg cttctcaaaa accaaaaata gtgcttcagg ctaggagcac 1020 agcagaaaaa gagaaaaagc ttatgatgat tctagctagt gtcgttggga tcacttatct 1080 cttcgattat gacatagcag aaactctcgg gaattgtcta cataaaataa gccgtctatc 1140 ctcatatctt ctcgacgacc atcaaggcat cgcatcacga atgtttggag cgagctatgg 1200 gcttcaggct ggcgatagtg ctgaggatgc agttacaacg ataatcagcg acctactgtc 1260 tgtcactttt aaaattgtgg acgaagacgc atcacagggc accgtggagg atgcatctga 1320 gacaaccttt cacagttggg ttggtgttaa cacacttgca ggtcgcaata tgtcaagacc 1380 actccagtat gacgtcaata aaacgtatgc actcacacct caaaatgtcc agctccaagc 1440 gcgagctatg gcagacgcta acaactgctg gtcaatggtt gttggtcaca caggatctgg 1500 aaagtcaaca tacttacctg tgcagtactc caattactta tccaccaaga gtgataggcg 1560 acagcagatt cttatctgcg agccaaccca ggctgccact gagaacgttt gcgctggcgt 1620 tgctgctaat cttggcaggg ctgtttacgg gcgccatgag ggtcggtcca gaatggggga 1680 tcattgcatt caagttatga cgtatggttc cgcgctccag tgccatgcta tggaccctag 1740 cttcatatca actttcgacg caatttttct tgatgaagca cacgacgtca aagagcactc 1800 tctagtcttt gagagcattt gtgatacatt taaatccgtt cgaaagttct atgtttcagc 1860 tactcctaga gatggaagtg tatgtcctga agcagctagg aaatatcctt tacatgtgga 1920 aactagcgtt tgcgattcgt accggaagtt cattgcagct cagggtgggg gagatttgct 1980 ggacatctca aaacacgaca cagccttagt ctttctagca ggacggcctg agtgtattaa 2040 agctgctaat gcctggaatg ctagtgtcac cggtgagaag cgtgcctttt ctttgtcgag 2100 cgacaacttt gctaccgact tctcaatgct caccgagagg ctcaaaacac acaaaaccat 2160 catcttcacc acgaacataa ttgagacagg tgttactctt agcgttgatt gtgttgttga 2220 tttcggccat acgatgcgcc catgtttgga tctcaatcaa aaatcattac gtcttgatcg 2280 acgcagagtg acgcgaaacg aaagacagca gaggattggg cgagcaggtc ggcttaaaga 2340 cgggtacgcc atagtgtgtg gagatgttga taaagctgtg aatgtcatct ctcctgatgt 2400 tctttacggt gccgctcttc tgagctttaa acacaatgtg cctttctaca tgaacgaaac 2460 atttgagagt tcctggttgg agggtgtcac aaaggcacaa gctgacacaa tgacaatatt 2520 caagcttcct atatttctaa cacgagatct cattaatgca gatggatcag ttgctaggga 2580 gtttctcgat gttttaaaga agcatcaatt cacaacaagt gacataaagc aagcaccaag 2640 tgtcacagcc aaacatatct tcccaacttg ggcttcatac ttctctctcc atcaggcgct 2700 tcattatggt gatgacaagg atgagatacc acacgagttg cgatatgcgc gcgttccttt 2760 ctccgtcaca actttgagca aatttgattg gccagcctta gctcttgcat gcgagaaaca 2820 tagagcttcc atgtcaaatg tgtttgctgg cattgaggaa cccgcacgcg ttgttactct 2880 acaaacaaat cctgcgaaca tacaagcgag catcacacat ttaacgcata tgagtaagaa 2940 ctataaaact cttattgaga acaaccagca cgtgcgtcaa tccatgatga cgaatgtcat 3000 gtttaagtgg ttctcttcca ctcgcatcac taaagatctt gataggaact tgcgtagatg 3060 cacggataac ctctcggttg tcgaggccac gcttagctca ctcagacaaa tcttagctgg 3120 caacacgcag gttcatgcaa cgccgcacat gcagagcact cttgaggata ttattgaact 3180 ccaggctagc gacacactta cggaagaaag cttagcaaac gcacttggca tctttgttcc 3240 aaagtgcaac ctctttctgc tgctagctac caaaggtttc aagcttgtgt acgttgtttg 3300 catcttactt cttgtgaacc ttgtttatac tggtcttcgc aagtggcgcg agcatctcaa 3360 gcaaaaagga agtgacgaaa tcctaactaa cacaatgcca gttagtgaag gaggcgaaat 3420 tcttgctgag gttatgaaaa tggagcccaa aatgagaaag aacatcaaga gggatatgga 3480 tgcagctgtt gagagcaaac tatgtggttt cacctttgtt tttccagatg atgataaaat 3540 tggccttgaa ggcaagggga acaaataccg ccctcgcgaa gacgctcgcc tgatgtactc 3600 cactagagag gacgccacct ttgacgcctg gaatgagaaa gcgaaggaaa gacgtaagaa 3660 ggtaaccgac aaagctgagc cagagcttcg gcgagcctac gagaagagac catacttcaa 3720 tttctacgac cttcaaacag atagcaacat tctggaagct attttctaca ccactgaagg 3780 cgatgagttt ttccgaacag cagaccctaa taaggacatg aacttggttg ctgataaact 3840 acgctccttt ctcgatacaa agcttgttgt tggacaccat cagcggaagc tactagaaga 3900 aacagctgcg gttgttatta gggatacaaa gggaactgtg cacaacatgg aaatttcaca 3960 gcatgatcca gattttctga agcagaatgg gtccggcaaa gttgggtatc cagaacaccg 4020 aggacagttt cggcaggaag gagttgccat cacagcggat tacgatcttg aagctgagtt 4080 tggcgccgac accgatgaaa taacgcttga ggcctctact ggaattttat tgtcacaagt 4140 tggggtcgat gttgcaactc gagttggaag aatttgcatt ggcactttca atatgaactg 4200 ttacttctat agcgactgga ttctagttcc aggacacctg caagacagat ctggcaacgt 4260 aacaattcaa ttccctgacc aaacagtgca aaccacaact gacgcactca acgcaaatgg 4320 tgtgaaacga ttctatggat tagatgtgat agcaattcgt cgccctgctg ctttgcggcc 4380 tcgcaccaag ttggtcaaag cttttgctat tgaggaacca 4420 //