ID AJ515480; SV 1; linear; mRNA; STD; VRL; 7613 BP. XX AC AJ515480; XX DT 11-SEP-2003 (Rel. 77, Created) DT 19-SEP-2003 (Rel. 77, Last updated, Version 2) XX DE Barley yellow mosaic virus 1 gene for polyprotein 1, genomic RNA, isolate DE CRW XX KW 1 gene; 6K1 protein; 6K2 protein; CI protein; coat protein; KW NIa-Pro protein; NIb protein; P3 protein; polyprotein 1; VPg protein. XX OS Barley yellow mosaic virus OC Viruses; Riboviria; Potyviridae; Bymovirus. XX RN [1] RP 1-7613 RA Adams M.J.; RT ; RL Submitted (07-NOV-2002) to the INSDC. RL Adams M.J., Plant Pathogen Interactions Division, Rothamsted Research, RL Harpenden, Herts AL5 2JQ, UNITED KINGDOM. XX RN [2] RX DOI; 10.1099/vir.0.19347-0. RX PUBMED; 13679620. RA Kuehne T., Shi N., Proeseler G., Adams M., Kanyuka K.; RT "The ability of a bymovirus to overcome the rym4-mediated resistance in RT barley correlates with a codon change in the VPg coding region on RNA1."; RL J. Gen. Virol. 84(Pt 10):2853-2859(2003). XX DR MD5; f0942df16649955559d8733d2a8fac8c. XX FH Key Location/Qualifiers FH FT source 1..7613 FT /organism="Barley yellow mosaic virus" FT /host="Hordeum vulgare" FT /strain="2 (resistance-breaking)" FT /isolate="CRW" FT /mol_type="mRNA" FT /country="United Kingdom:Oxfordshire" FT /isolation_source="Crawley" FT /db_xref="taxon:12465" FT 5'UTR <1..143 FT CDS 143..7381 FT /gene="1" FT /product="polyprotein 1" FT /db_xref="GOA:Q70WS6" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001592" FT /db_xref="InterPro:IPR001650" FT /db_xref="InterPro:IPR001730" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR013648" FT /db_xref="InterPro:IPR014001" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q70WS6" FT /protein_id="CAD56472.1" FT /translation="MEQTLAQAVSRRGKTNTPMAEERKPFSPMNFSANFVAPELFYSAN FT VRKIKNIFRERSTTRFLDAISSDFELVAFLTLSPAHLMQLETTLRQEIRSCVVPIVTSD FT ASFETVAVIKTALDGMRFHFGHTTLEKGWMSMMRHAESCLQESSSSAVNDLQMQIKRVG FT SLLLSGKNRVESCELSVLNLTARRFRIEYGLNGTYFGEHVAMLLDLKRYIYGTVPKEFL FT WAKTKKHSLFTTPEWIKRTPIDCFLFCLRVIPILHRFGVAISLLYWSCVAALNFPAFMA FT FLFKRQFAKYLAHSFAKHSIYFIFLTIIAILWSFRTFASQKPKIVLQARSTAEKEKKLM FT MILASVVGITYLFDYDIAEALGNCLHKISRLSSYLLDDHQGIASRMFGASYGLQAGDSA FT EDAVTTIISDLLSVTFKIVDEDASQGTVEDASETTFHSWVGVNTLAGRNMSRPLQYDVN FT KTYALTPQNVQLQARAMADANNCWSMVVGHTGSGKSTYLPVQYSNYLSTKSDRRQQILI FT CEPTQAATENVCAGVAANLGRAVYGRHEGWSRMGDHCIQVMTYGSALQCHAMDPSFIST FT FDAIFLDEAHDVKEHSLVFESICDTFKSVRKFYVSATPRDGSVCPEAARKYPLHVETSV FT CDSYRKFIAAQGGGDLLDISKHDTALVFLAGRPECIKAANAWNASVTGEKRAFPLSSDN FT FATDFSMLTERLQTHQTIIFTTNIIETGVTLSVDCVVDFGHTMRPCLDLNQKSLRLDRR FT RVTRNERQQRIGRAGRLKDGYAIVCGDVDRAVNVISPDVLYGAALLSFKHNVPFYMNET FT FESSWLEGVTKAQADTMTIFKLPIFLTRDLINADGSVAREFLDVLKEHQFTTSDIKQAP FT SVTAKHIFPTWASYFSLHQALHYGDDKDEIPHELRYARVPFSVTTLSKFDWPALALACE FT KHRASMSNVFAGIEEPARVITLQTNPANIQASITHLTHMSKNYKTLIENNQHVRQSMMT FT NVMFKWFSSTRITKDLDRNLRRCTDNLSVVEATLSSLRQILAGNTQVHATPHMQSTLED FT IIELQASDTLTEESLANALGIFVPKCNLFLLLATKGFKLVYVVCILLLVNLVYTGLRKW FT REHLKQKGSNEILTNTMPVSEGGEILAEVMKMEPKMRKNIKRDMDAAPESKLCGFTFVF FT PDDDKIGLEGKGNKYRPREDARLMYSTREDATFDAWNEKAKERRKKVTDKAEPELRRAY FT EKRPYFNFYDLQTDSNILEAIFYTTEGDEFFRTADPNRDMNLVADKLRSFLDTKLVVGH FT HQRKLLEETANVVIKDTKGTAHNMEISQDDPDFLKQNGSGKVGYPEHRGQFRQEGVAVT FT GDYDLEAEFGADADEITLEASTGILLSQVGVDVATRVGRICIGTFNMNCYFYSDWILVP FT GHLQDRSGNVTIQFPDQTVQTTTDALNANGVKRFYGLDVIAIRRPAILRPRTKLVKAFA FT IEEPVIAQMVFVDAQGVRKFTQSDWARKEENSGRWSHKISTVLGMCGCPVLDVGKNRLI FT GIHVATNYTKKRNEFQPFTQEVVDFINGPGTKIPYCPWVFDRPACGYSSHNALFEKPTT FT LADVIHMQASDGLHNINNAIEGFGSSLKGQLVSPPTESTRQRFDKLFGSGSFELIGQMN FT KGLIDKHVIVGENDDVYDFMREHPTFTWLKDFMNEYAPSVLSYSAYYKDLCKYNRAKHV FT LTYNPEELHCATKGLIKMLEDAGLTQGSVRTPQQVVSDIQWNTSAGPSYQGKKRDLCAH FT LSDDEVLHLTEVCRQQFLEGKSTGVWNGSLKAELRTIEKVEAEKTRVFTASPITSLFAM FT KFYVDDFNKKFYATNLKAPHTVGINKFGRGWEKLHDKLNRPGWLHGSGDGSRFDSSIDP FT FFFDVVKTIRKHFLPSEHHKAIDLIYDEILNTTICLANGMVIRKNVGNNSGQPSTVVDN FT TLVLMTAFLYAYIHKTGDRELALLNERFILVCNGDDNKFAISPQFDEEFGHDFSPELVE FT LGLTYEFDDITSDICENPYMSLTMVKTPFGVGFSLPVERIIAIMQWSKKGGVLHSYLAG FT ISAIYESFNTPKLFKSIYAYLLWLTEEHEAEILAAMTQSSTALPIPSMLDVYRLHYGDD FT EIWLQAADPLTDAQKEAAHTAAADRARLDLADADRRRKVEADRVEAARVKKAADAVLKP FT VNLTATRMPTEDDGKLKTPSGARIPSSAADGNWSVPATKQVNAGLTLKIPLNKLKSVPK FT SVMEHNNSVALESELKAWTDAVRTSLGITTDEAWIDALIPFIGWCCNNGTSDKHAENQV FT MQIDSGKGAVTEMSLSPFIVHARMNGGLRRIMRNYSDETVLLITNNKLVAHWSMKHGAS FT ANAKYAFDFFVPRSWMNPQDIEVSKQARLAALGTGTYNTMLTSDTTNLRKTTNHRVLDS FT DGHPELT" FT mat_peptide 143..1126 FT /gene="1" FT /product="P3 protein" FT mat_peptide 1127..1324 FT /gene="1" FT /product="6K1 protein" FT mat_peptide 1325..3301 FT /gene="1" FT /product="CI protein" FT mat_peptide 3302..3667 FT /gene="1" FT /product="6K2 protein" FT mat_peptide 3668..4228 FT /gene="1" FT /product="VPg protein" FT mat_peptide 4229..4903 FT /gene="1" FT /product="NIa-Pro protein" FT mat_peptide 4904..6487 FT /gene="1" FT /product="NIb protein" FT mat_peptide 6488..7378 FT /gene="1" FT /product="Coat protein" FT 3'UTR 7382..7613 XX SQ Sequence 7613 BP; 2121 A; 1760 C; 1717 G; 2015 T; 0 other; caaaacgaaa caaacacaaa catcgcacgc ttcccgagct cacaacacct gtagagtgat 60 ttttgtcatc ctactgtttg taagcttttc agcaaatcaa cccgcttgct ttcgcacctc 120 cttcaccttc actctcgctc ttatggagca aaccctagct caagctgtgt cacggagagg 180 taaaacaaac acacctatgg cagaagagcg gaaacctttc agccccatga atttttctgc 240 aaactttgtt gctcctgagc tcttttatag tgctaatgtg aggaaaatta aaaatatctt 300 cagagagcgc agcacaactc ggtttctgga tgcaatttca agtgattttg agctcgttgc 360 ttttctcact ttgagtcccg ctcacttaat gcaacttgag acaactctgc gccaagaaat 420 acgttcgtgt gttgtgccaa ttgttacctc tgatgctagc ttcgaaacag tcgctgtcat 480 caaaactgct ctggatggca tgagatttca ctttggacac accactcttg aaaaggggtg 540 gatgtccatg atgcgccatg cagagagttg cctgcaagag agctcctctt cggctgtgaa 600 tgatctgcag atgcagatta aacgcgttgg atcattgctc ttgagtggaa aaaatcgcgt 660 agaaagctgc gaactatctg tcttgaacct cacagcgcga cgtttcagga tcgaatatgg 720 gctaaatggt acatactttg gcgaacatgt tgctatgcta ctcgacttaa agcgttatat 780 ctatggtacc gtgccaaaag agtttttgtg ggcgaaaacc aaaaagcact cgctattcac 840 aacccccgag tggatcaagc gtacgcccat cgactgtttc ttgttctgtc ttcgcgttat 900 ccctatctta cataggtttg gtgtggccat atcactcctt tactggtcgt gtgttgctgc 960 tctgaatttc cctgctttta tggctttctt atttaagcgt cagtttgcta agtatttagc 1020 tcactctttt gctaaacact ccatctactt tatattttta actataattg ctattttatg 1080 gtcttttcgc acttttgctt ctcaaaaacc aaaaatagtg cttcaggcta ggagcacagc 1140 agaaaaagag aaaaagctta tgatgattct agctagtgtc gttgggatca cttatctctt 1200 cgattatgac atagcagaag ctctcgggaa ttgtctacat aaaataagcc gtctatcctc 1260 atatcttctc gacgaccatc aaggcatcgc atcacgaatg tttggagcga gctatgggct 1320 tcaggctggc gatagtgctg aggatgcagt cacaacgata atcagcgacc tactgtctgt 1380 tacttttaaa attgtggacg aagacgcatc acaaggcacc gtggaggatg catctgagac 1440 aacctttcac agttgggttg gtgttaacac acttgcaggt cgcaatatgt caagaccact 1500 ccagtatgac gtcaataaaa cgtatgcact cacacctcaa aatgtccagc tccaagcgcg 1560 agctatggca gacgctaaca actgctggtc aatggtggtt ggtcatacag gatctggaaa 1620 gtcaacatac ttacctgtgc agtactccaa ttacttatcc accaagagtg ataggcgaca 1680 gcagattctt atctgcgagc caactcaggc tgccactgag aatgtttgcg ctggcgttgc 1740 tgccaatctt ggcagagctg tttacgggcg ccatgagggt tggtccagaa tgggggatca 1800 ttgcattcaa gttatgacgt atggttccgc gctccagtgc catgctatgg accctagctt 1860 catatcaact ttcgacgcaa ttttccttga tgaagcacac gacgtcaaag agcactctct 1920 agtctttgag agcatttgtg acacatttaa atccgttcga aagttctacg tttcagccac 1980 tcctagagat ggaagtgtat gtcctgaagc agctaggaaa tatcctttac atgtcgaaac 2040 tagcgtttgc gattcgtatc ggaagttcat tgcagctcaa ggtgggggag atttgctgga 2100 catctcaaaa catgacacag ctttagtctt tctagcagga cggcctgagt gtattaaagc 2160 tgctaatgcc tggaatgcta gtgtcaccgg tgagaagcgc gcctttcctt tgtccagcga 2220 caactttgct accgacttct caatgctcac cgagaggctc caaacacacc aaaccattat 2280 cttcaccacg aacataattg agacaggtgt cactcttagc gttgattgtg ttgttgattt 2340 cggccatacg atgcgcccat gtttggatct caatcagaaa tcattacgtc ttgatcgacg 2400 cagagtgacg cgaaatgaaa gacagcagag aattgggcga gcaggtcggc ttaaagacgg 2460 gtacgccata gtgtgtggag atgttgatag ggctgtaaat gtcatctctc ctgatgttct 2520 ttatggtgcc gctcttctga gttttaaaca caatgtgcct ttctacatga acgaaacatt 2580 tgagagttcc tggttggagg gtgttacaaa ggcacaagct gacacaatga caatattcaa 2640 gcttcctata tttctaacac gagatctcat taatgcagat ggctcagttg ctagggagtt 2700 tctcgatgtt ttaaaggagc atcaattcac aacaagtgac ataaagcaag caccaagtgt 2760 cacagccaaa catatcttcc caacttgggc ttcatacttc tctctccatc aggcgcttca 2820 ttatggtgat gacaaggatg agataccaca cgagttgcga tatgcgcgcg ttcctttctc 2880 cgtcacaact ttgagcaaat tcgattggcc agccttagct cttgcatgcg agaaacatag 2940 agcttccatg tcaaatgtgt ttgctggcat cgaggaaccc gcacgcgtta tcactctaca 3000 aacaaatcct gcgaacatac aagctagcat cacacattta acgcatatga gtaagaacta 3060 taaaactctt attgaaaaca accagcacgt gcgccaatcc atgatgacga atgttatgtt 3120 caagtggttt tcttccactc gcattactaa agatcttgat agaaacttgc gaagatgcac 3180 ggataacctc tcagttgtcg aggccacgct cagctcactt agacaaatct tagctggcaa 3240 cacgcaggtt cacgcaacgc cgcacatgca gagcactctt gaggatatta ttgaactcca 3300 ggctagcgac acactcacgg aagaaagctt agcaaacgca cttggcatct ttgttccaaa 3360 gtgcaacctc tttctgctgc tagctactaa aggtttcaag cttgtgtacg ttgtctgcat 3420 cttacttctt gtgaaccttg tttatactgg tcttcgtaag tggcgcgagc atctcaagca 3480 aaagggaagt aacgaaatcc taactaacac aatgccagtt agcgaagggg gcgaaattct 3540 cgctgaagtt atgaaaatgg agcctaaaat gagaaagaac atcaagaggg atatggatgc 3600 agctcctgag agcaaactat gtggcttcac ttttgttttt ccagatgacg ataaaattgg 3660 tcttgaaggc aagggaaaca aataccgccc tcgcgaagac gctcgcctga tgtactccac 3720 tagagaagac gccacctttg acgcctggaa tgagaaagcg aaggaaagac gcaagaaagt 3780 aaccgacaaa gctgagccag agcttcggag agcctatgag aagagaccat atttcaattt 3840 ctacgacctt caaacagata gcaacattct ggaagctatt ttctacacca ctgaaggtga 3900 tgagtttttc cgaacagcag accctaacag ggacatgaac ttggttgctg ataaactgcg 3960 ctcttttctc gatacaaagc ttgttgttgg acaccatcag cggaagcttc tagaagaaac 4020 agctaatgtt gttatcaagg acacgaaggg aactgcgcac aatatggaaa tttcacagga 4080 tgatccagat tttctgaagc agaatgggtc cggcaaagtt gggtatccag aacaccgagg 4140 acagtttcgg caggaaggag ttgccgtcac aggggattac gatcttgaag ctgagtttgg 4200 cgccgatgct gatgaaataa cgcttgaggc ctctactgga attttattgt cacaagttgg 4260 ggtagatgtt gcaactcgag ttggaagaat ttgcattggc actttcaata tgaactgtta 4320 cttctatagc gactggattc tagttccagg acacctgcaa gatagatctg gcaacgtaac 4380 aattcaattc cctgaccaaa cagtgcaaac cacaaccgac gcactcaacg caaatggtgt 4440 gaaacgattc tatggattag atgtaatagc aattcgtcgc cctgctatct tgcggcctcg 4500 caccaagttg gtcaaagctt ttgctattga ggaaccagtt atcgcacaaa tggtcttcgt 4560 tgatgcgcag ggagtccgta agttcactca atctgattgg gccaggaagg aggagaattc 4620 tgggcgttgg tcacacaaga tctccactgt tctcggtatg tgcggatgcc cagtcttgga 4680 cgttggaaag aacagattga tagggatcca tgttgccaca aactacacaa agaagcgcaa 4740 cgagttccaa cccttcactc aggaggttgt cgactttata aatggacctg ggacaaaaat 4800 cccctactgc ccatgggtat ttgatagacc ggcttgtggg tattcatccc acaacgcttt 4860 gttcgagaaa ccaaccacac tggctgacgt cattcacatg caggcttctg atggtttgca 4920 caacatcaac aatgccattg agggttttgg gagctcactg aagggtcagc ttgtgtcacc 4980 acccactgaa tccaccaggc aacgtttcga taagctgttt ggtagtggca gctttgagct 5040 cattgggcag atgaacaaag gcttaatcga caagcacgtg attgttgggg aaaacgatga 5100 tgtttatgac ttcatgcgcg agcatccaac atttacttgg ttgaaagatt tcatgaatga 5160 atatgcgcct agtgttttgt cttattctgc ttactacaag gacctttgta agtataatcg 5220 tgcaaaacac gtgctcactt acaacccaga agagctccat tgtgcgacga aaggactgat 5280 caagatgttg gaagacgctg gcttgacaca aggcagtgtg aggacacccc aacaagttgt 5340 ttcggacatt caatggaaca cttccgctgg accgagttat caagggaaga aacgcgacct 5400 ctgtgcccac ttgagcgatg acgaggtgct gcatcttact gaggtttgtc gtcaacaatt 5460 tcttgagggc aagtcaactg gagtgtggaa cggttctctg aaagctgagt tgagaaccat 5520 tgagaaagtt gaggcggaga aaacgcgcgt tttcacagcc tctcccataa caagcctgtt 5580 tgccatgaaa ttctacgttg atgactttaa caagaagttc tatgctacca atctgaaagc 5640 cccccacact gttggcatca ataagttcgg taggggatgg gaaaaattgc atgacaagct 5700 taatcgccct ggatggttgc acggcagtgg ggatggttct aggttcgata gctctatcga 5760 tcctttcttc tttgacgttg tgaaaactat tcgtaagcac tttctccctt ctgagcatca 5820 taaagccatt gatctcatat atgatgagat tctcaacaca accatctgcc tggctaatgg 5880 gatggttatc aggaagaatg ttggaaacaa tagcgggcag cctagtactg ttgttgacaa 5940 cacacttgtg cttatgactg cattcctcta cgcatacatt cacaagacag gggatcgtga 6000 gttagccttg ctaaacgagc gtttcatcct tgtttgcaac ggtgatgaca ataagtttgc 6060 catatctccg cagtttgatg aagagtttgg gcacgatttt tccccagaac ttgttgaact 6120 tggacttacg tatgagtttg atgacatcac tagcgacatt tgcgagaatc cttatatgtc 6180 cctcaccatg gttaaaactc cttttggtgt tggtttctct cttcccgtgg aaagaatcat 6240 agccataatg cagtggtcca agaaaggggg ggttttgcac tcatatttag ctggcatctc 6300 cgcaatttac gaatccttca acacaccaaa actcttcaaa tcaatctatg cgtaccttct 6360 ttggctcact gaggagcacg aggcagaaat tcttgcagcc atgactcaat cctcaaccgc 6420 cctccctata ccatcaatgc tcgatgttta tcggttacac tatggtgatg atgaaatttg 6480 gctgcaagca gctgatcctc tcactgatgc gcaaaaagaa gctgcacaca ctgccgcagc 6540 tgatagagca cgcctcgacc tagccgacgc tgatcgtaga cgtaaagttg aagcggaccg 6600 tgtggaagcg gcaagagtta aaaaggcagc tgatgctgtg ctaaaaccag ttaacctcac 6660 agcaacacgc atgcccacag aagatgatgg caaacttaaa acgccatctg gtgctagaat 6720 accatcatca gctgcagatg gtaactggag cgtgccggca acgaagcaag ttaacgctgg 6780 tttaacactt aaaattcccc tgaataagct caaaagtgtg cctaagtctg ttatggaaca 6840 taacaactca gttgcacttg aatctgagct aaaagcctgg actgatgctg tgcgcacaag 6900 tttaggtatc acaactgatg aggcatggat cgatgccctc atacccttca tcggatggtg 6960 ctgcaacaat ggcacctcag acaagcatgc tgagaatcaa gtaatgcaaa tcgacagcgg 7020 aaagggagct gtcacagaga tgagtctgtc cccatttatt gttcatgctc gaatgaatgg 7080 tggactccga aggatcatgc gtaactacag tgatgaaacc gtcttactca tcacaaacaa 7140 caaactagtt gcacattggt caatgaagca tggcgcttct gcaaatgcaa aatatgcttt 7200 cgatttcttc gtcccacgat catggatgaa cccacaggac atcgaagtat caaagcaagc 7260 gcgcttagca gcacttggaa ctggaacgta taacaccatg ttaacttccg acactaccaa 7320 tctgcgtaag acaaccaacc acagggttct ggactcagat ggacacccag aactaaccta 7380 aaccatcacc ccgttcctaa aacatcaccc acccccactc ataaatcagt ctgtaaataa 7440 tgttcgtgac gtctttgtat caggctcggg gcggttctat gatccaaatc cctttggcag 7500 ttacaatgtc agcattctca ttgaggagta tgacagcgtt tgatcagccg tttttaatca 7560 tccgtcgttg gatggtggtt cacttagttc acttacgagt accagaaggt aat 7613 //