ID AJ515479; SV 1; linear; mRNA; STD; VRL; 7643 BP. XX AC AJ515479; XX DT 11-SEP-2003 (Rel. 77, Created) DT 19-SEP-2003 (Rel. 77, Last updated, Version 2) XX DE Barley yellow mosaic virus 1 gene for polyprotein 1, genomic RNA, isolate DE EST XX KW 1 gene; 6K1 protein; 6K2 protein; CI protein; coat protein; KW NIa-Pro protein; NIb protein; P3 protein; polyprotein 1; VPg protein. XX OS Barley yellow mosaic virus OC Viruses; Riboviria; Potyviridae; Bymovirus. XX RN [1] RP 1-7643 RA Adams M.J.; RT ; RL Submitted (07-NOV-2002) to the INSDC. RL Adams M.J., Plant Pathogen Interactions Division, Rothamsted Research, RL Harpenden, Herts AL5 2JQ, UNITED KINGDOM. XX RN [2] RX DOI; 10.1099/vir.0.19347-0. RX PUBMED; 13679620. RA Kuehne T., Shi N., Proeseler G., Adams M., Kanyuka K.; RT "The ability of a bymovirus to overcome the rym4-mediated resistance in RT barley correlates with a codon change in the VPg coding region on RNA1."; RL J. Gen. Virol. 84(Pt 10):2853-2859(2003). XX DR MD5; 70997bf2a2812377aa3f6631fe8695d5. XX FH Key Location/Qualifiers FH FT source 1..7643 FT /organism="Barley yellow mosaic virus" FT /host="Hordeum vulgare" FT /strain="1 (common)" FT /isolate="EST" FT /mol_type="mRNA" FT /country="United Kingdom:Gloucestershire" FT /isolation_source="Eastleach" FT /db_xref="taxon:12465" FT 5'UTR 1..173 FT CDS 174..7412 FT /gene="1" FT /product="polyprotein 1" FT /db_xref="GOA:Q70WS7" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001592" FT /db_xref="InterPro:IPR001650" FT /db_xref="InterPro:IPR001730" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR013648" FT /db_xref="InterPro:IPR014001" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q70WS7" FT /protein_id="CAD56471.1" FT /translation="MEQTLAQAVSRKGKTNTPMAEERKHFSPMNFSANFVAPELFYSAN FT VRKIKNIFRERSTTRFLDAISSDFELVAFLTLSPAHLMQLETTLRQEIRSSVVPIVTSD FT ASFETVAVIKTALDGMRFHFGHTTLEKGWMSMMRHAESCLQESSSSAVNDLQMQIKRVG FT SLLLSGKNRVESCELSVLNLTARRFRIEYGLNGTYFGEHVAMLLDLKRYIYGTVPKEFL FT WAKTKKHSLFTTPEWIKRTPIDCFLFCLRVIPILHRFGVAISLLYWSCVAALNFPAFMA FT FLFKRQFAKYLAHSCAKHSIYFIFLSIIAILWSFRTFASQKPKIVLQARSTAEKEKKLM FT MILASVVGITYLFDYDIAEALGNCLHKISRLSSYLLDDHQGIASRMFGASYGLQAGDSA FT EDAITTIISDLLSVTFKIVDEDASQGTVEDASETTFHSWVGVNTLAGRNMSRPLQYDVN FT KTYALTPQNVQLQARAMADANNCWSMVVGHTGSGKSTYLPVQYSNYLSTKSDRRQQILI FT CEPTQAATENVCAGVAANLGRAVYGRHEGWSRMGDHCIQVMTYGSALQCHAMDPSFIST FT FDAIFLDEAHDIKEHSLVFESICDTFKSVRKFYVSATPRDGSVCPEAARKYPLHVETSV FT CDSYRKFIAAQGGGDLLDISKHDTALVFLAGRPECIKAANAWNASVTGEKRAFPLSSDN FT FATDFSMLTERLKTHKTIIFTTNIIETGVTLSVDCVVDFGHTMRPCLDLNQKSLRLDRR FT RVTRNERQQRIGRAGRLKDGYAIVCGDVDRAVNIISPDVLYGAALLSFKHNVPFYMNET FT FESSWLEGVTKAQADTMTIFKLPIFLTRDLINADGSVAREFLDVLKRHQFTTSDIKQAP FT SVTAKHIFPTWASYFSLHQALHYGDDKDEIPHELRYARVPFSVTTLSKFDWPALALACE FT KHRASMSNVFAGIEEPARVVTLQTNPANIQASITHLTHMSKNYKTLIENNQHVRQSMMT FT NVMFKWFSSTRITKDLDRNLRRCTDNLSVVEATLSSLRQILAGNTQVHATPHMQSTLED FT IIELQASDTLTEESLANALGIFVPKCNLFLLLATKGFKLVYVVCILLLVNLVYTGLRKW FT REHLKQKGSNEILTNTMPVSEGGEILAEVMKMEPKMRKNIKRDMDAAVESKLCGFTFVF FT PDDDKIGLEGKGNKYRPREDARLMYSTREDATFDAWNEKAKERRKKVTDKAEPELRRAY FT EKRPYFNFYDLQTDSNILEAIFYTTEGDEFFRTADPNKDMNLVADKLRSFLDTKLVVGH FT HQRKLLEETAHVVVKDTKGTAHKMEISEDDPDFLKENGSGKVGYPEHRGQFRQEGVAIT FT GDYDLEAEFGADADEITLEASTGILLSQVGVDVATRVGRICIGTFNMNCYFYSDWILVP FT GHLQDRSGNVTIQFPDQTVQTTTDALNANGVKRFYGLDVIAIRRPAILRPRTKLVKAFA FT IEEPVIAQMVFVDAQGVRKFTQSDWARKEENSGRWSHKISTVLGMCGCPVLDVGKNRLI FT GIHVATNYTKKRNEFQPFTQEVVDFINGPGTKIPYCPWVFDRPACGYSSPNALFEKPTT FT LADVIHMQASDGLHNINNAIEGFGSSLKGQLVSPPTESTRQRFDKLFGSGSFELIGQMN FT KGLIDKHVIVGENDDVYDFMREHPTFTWLKDFMNEYAPSVLSYSAYYKDLCKYNRAKHV FT LTYNPEELHCATKGLIKMLEDAGLTQGSVRTPQQVVSDIQWNTSAGPSYQGKKRDLCAH FT LSDDEVLHLAEVCRQQFLEGKSTGVWNGSLKAELRTIEKVEAEKTRVFTASPITSLFAM FT KFYVDDFNKKFYATNLKAPHTVGINKFGRGWEKLHDKLNRPGWLHGSGDGSRFDSSIDP FT FFFDVVKTIRKHFLPSEHHKAIDLIYDEILNTTICLANGMVIRKNVGNNSGQPSTVVDN FT TLVLMTAFLYAYIHKTGDRELALLNERFILVCNGDDNKFAISPQFDEEFGHDFSPELVE FT LGLTYEFDDITSDICENPYMSLTMVKTPFGVGFSLPVERIIAIMQWSKKGGVLHSYLAG FT ISAIYESFDTPKLFKSIYAYLLWLTEEHEAEILAAMTQSSTALPIPSMLDVYRLHYGDD FT EIWLQAADPLTDAQKEAAHTAAADRARLDLADADRRRKVEADRVEAARVKKAADAVLKP FT VNLTATRMPTEDDGKLKTPSGARIPSSAADGNWSVPATKQVNAGLTLKIPLNKLKSVPK FT SVMEHNNSVALESELKAWTDAVRTSLGITTDEAWIDALIPFIGWCCNNGTSDKHAENQV FT MQIDSGKGAVTEMSLSPFIVHARMNGGLRRIMRNYSDETVLLITNNKLVAHWSMKHGAS FT ANAKYAFDFFVPRSWMNPQDIEVSKQARLAALGTGTYNTMLTSDTTNLRKTTNHRVLDS FT DGHPELT" FT mat_peptide 174..1157 FT /gene="1" FT /product="P3 protein" FT mat_peptide 1158..1355 FT /gene="1" FT /product="6K1 protein" FT mat_peptide 1356..3332 FT /gene="1" FT /product="CI protein" FT mat_peptide 3333..3698 FT /gene="1" FT /product="6K2 protein" FT mat_peptide 3699..4259 FT /gene="1" FT /product="VPg protein" FT mat_peptide 4260..4934 FT /gene="1" FT /product="NIa-Pro protein" FT mat_peptide 4935..6518 FT /gene="1" FT /product="NIb protein" FT mat_peptide 6519..7409 FT /gene="1" FT /product="coat protein" FT 3'UTR 7413..7643 XX SQ Sequence 7643 BP; 2149 A; 1760 C; 1722 G; 2012 T; 0 other; aaaaaataaa acaaccctaa accaaaacaa acaaaacgaa acaaacacaa acatcacacg 60 ctccccaagc ttacaatacc tgtagagtga tttttgtcat cctactgtct gtaagttttt 120 cagcaaatca acccgcttgc tttcgcacct ccttgacctt cactctcgct cttatggagc 180 aaaccctagc tcaagctgtg tcacggaaag gtaaaacaaa cacacctatg gcagaagagc 240 ggaaacattt cagccccatg aatttttccg caaactttgt tgctcctgag ctcttctata 300 gtgctaatgt gaggaaaatt aaaaatatct tcagagagcg cagcacaact cggtttctgg 360 acgcaatttc aagtgatttt gagcttgtag cttttctcac cttgagtccc gctcacttaa 420 tgcaacttga gacaactctg cgccaagaga tacgttcgag tgttgtgcca attgttactt 480 ctgatgctag cttcgaaaca gttgctgtca tcaaaactgc tctggatggc atgagatttc 540 actttggaca caccactctt gaaaaagggt ggatgtctat gatgcgccat gcagagagtt 600 gcctgcaaga gagctcctct tcggctgtaa atgatctgca gatgcagatt aaacgcgttg 660 gatcactgct cttgagtgga aaaaatcgcg tagaaagctg cgaactatct gtcttgaacc 720 tcacagcgcg acgtttcagg atcgaatatg ggctaaatgg tacatacttt ggcgaacatg 780 ttgctatgct actcgactta aagcgttata tctatggtac cgtgccaaaa gagtttttgt 840 gggcgaaaac caaaaagcac tcgctattca caacccccga gtggatcaag cgtacgccca 900 tcgactgttt cttgttctgt cttcgcgtta tccctatctt acataggttt ggtgtggcca 960 tatcactcct ttactggtcg tgtgttgctg ctctgaattt tcctgctttt atggctttct 1020 tatttaagcg tcagtttgct aagtatttag ctcactcttg tgctaaacac tccatctact 1080 ttatattttt atctataatc gctattttat ggtcttttcg cacttttgct tctcaaaaac 1140 caaaaatagt gcttcaggct aggagcacag cagaaaagga gaaaaagctc atgatgattc 1200 tagctagcgt cgttgggatc acttatctct tcgattatga catagcagaa gctctcggga 1260 attgtctaca taaaataagc cgtctatcct catatcttct cgacgaccat caaggcatcg 1320 catcacgaat gtttggagcg agctatgggc ttcaggctgg cgatagtgct gaggatgcaa 1380 tcacaacgat aatcagcgac ctactgtctg ttacttttaa aattgtggac gaagacgcat 1440 cacagggcac cgtggaggat gcatctgaga caacctttca cagttgggtt ggtgttaaca 1500 cacttgcagg tcgcaatatg tcaagaccac tccagtatga cgtcaataaa acgtatgcac 1560 tcacacctca aaatgtccag ctccaagcgc gagctatggc agacgctaac aactgctggt 1620 caatggttgt tggtcataca ggatctggaa agtcaacata cttacctgtg cagtactcca 1680 attacttatc caccaagagt gataggcgac agcagattct tatctgcgag ccaactcaag 1740 ctgccactga gaacgtttgc gctggcgttg ctgccaatct tggcagagct gtttacggac 1800 gccatgaggg ttggtccaga atgggggatc attgcattca agttatgacg tacggttccg 1860 cgctccagtg ccatgctatg gaccctagct tcatatcaac tttcgacgca attttccttg 1920 atgaagcaca cgacatcaaa gagcactctc tagtctttga gagcatttgt gacacattta 1980 aatccgttcg aaagttctat gtttcagcca cccctagaga tggaagtgta tgtcctgaag 2040 cagctaggaa atatccttta catgtcgaaa ctagcgtttg cgactcgtat cggaagttta 2100 ttgcagctca aggtggggga gatttgctgg acatctcaaa acatgacaca gctttagtct 2160 ttctagcagg acggcctgag tgtattaagg ctgctaatgc ctggaatgct agtgtcaccg 2220 gtgagaagcg cgcctttcct ttgtcgagcg acaactttgc caccgacttc tcaatgctca 2280 ccgagaggct caaaacacac aaaaccatca tcttcaccac gaacataatt gagacaggtg 2340 tcactcttag cgttgattgt gttgttgatt tcggccacac aatgcgccca tgtttggatc 2400 tcaatcaaaa atcattacgt cttgatcgac gcagagtgac gcggaacgaa agacagcaga 2460 gaattgggcg agcaggtcgg cttaaagacg ggtacgccat agtgtgtgga gatgttgata 2520 gggctgtaaa tatcatctct cctgatgttc tttatggtgc cgctcttctg agttttaaac 2580 acaatgtgcc tttctacatg aacgaaacat ttgagagttc ctggttggag ggtgttacaa 2640 aggcacaagc tgacacaatg acgatattca agcttcctat atttctaaca cgagatctca 2700 ttaatgcaga tggctcagtt gctagggagt ttctcgatgt tttaaagagg catcaattca 2760 caacaagtga cataaagcaa gcaccaagtg tcacagccaa acatatcttc ccaacttggg 2820 cttcatactt ctctctccat caggcgcttc attatggtga tgacaaggat gagataccac 2880 acgagttgcg gtatgcgcgc gttcctttct ccgtcacaac tttgagcaaa ttcgattggc 2940 cagccttagc tcttgcatgc gagaaacata gagcttccat gtcaaatgtg ttcgctggca 3000 tcgaggaacc cgcacgcgtt gttactctac aaacaaatcc tgcgaacata caagcaagca 3060 tcacacattt aacgcatatg agtaagaact ataaaactct tattgaaaac aaccagcacg 3120 tgcgccaatc catgatgacg aatgttatgt tcaagtggtt ttcttccact cgcattacta 3180 aagatcttga taggaacttg cgaagatgca cggataacct ctcagttgtc gaggccacgc 3240 ttagctcact tagacaaatc ttagctggca acacgcaggt tcatgcaacg ccgcacatgc 3300 agagcactct tgaggatatt attgaactcc aggctagcga cacacttacg gaagaaagct 3360 tagcaaacgc acttggcatc tttgttccaa agtgcaacct cttcctgctg ctagctacta 3420 aaggtttcaa gcttgtgtac gttgtctgca tcttacttct tgtgaacctt gtttatactg 3480 gccttcgcaa gtggcgcgag catctcaagc aaaaaggaag caacgaaatc ctaactaaca 3540 caatgccagt tagtgaaggg ggcgaaattc tcgctgaggt tatgaaaatg gagcctaaaa 3600 tgagaaagaa catcaagagg gatatggatg cagctgttga gagcaaacta tgtggcttca 3660 cttttgtttt tccagatgat gataaaattg gtcttgaagg caagggaaac aaataccgcc 3720 ctcgcgaaga cgctcgcctg atgtactcca ctagagaaga cgccaccttt gacgcctgga 3780 atgagaaagc gaaggaaaga cgcaagaaag taaccgataa agctgagcca gagcttcgga 3840 gagcctatga gaagagacca tactttaatt tctacgacct tcaaacagat agcaacattc 3900 tggaagctat tttctacacc actgaaggtg atgagttttt ccgaacagca gaccctaaca 3960 aggacatgaa cttggttgct gataaactgc gctcttttct cgatacaaag cttgttgttg 4020 gacaccatca gcggaagcta ctagaagaaa cagctcatgt tgttgttaag gacacgaagg 4080 gaactgcgca caagatggaa atttcggagg atgatccaga ttttctgaag gagaatgggt 4140 ccggcaaagt tgggtatcca gaacaccgag gacagtttcg gcaggaagga gttgccatca 4200 caggggatta cgatcttgaa gctgagtttg gcgccgatgc tgatgaaata acgcttgagg 4260 cctctactgg aattttattg tcacaagttg gggtcgatgt tgcaactcga gttggaagaa 4320 tttgcattgg cactttcaat atgaactgtt acttctatag cgactggatt ctagttccag 4380 gacacctgca agatagatct ggcaacgtaa caattcaatt ccctgaccaa acagtgcaaa 4440 ccacaaccga cgcactcaac gcgaatggtg tgaaacgatt ctatggatta gatgtaatag 4500 caattcgtcg ccccgctatc ttgcggcctc gcaccaagtt ggtcaaagct tttgctattg 4560 aggaaccagt tatcgcacaa atggtctttg ttgatgcaca gggagtccgt aagttcactc 4620 aatctgattg ggccaggaag gaggagaatt ctgggcgttg gtcacacaaa atctccactg 4680 ttcttggcat gtgcggatgc ccagtcttgg acgttggaaa gaacagattg ataggaatcc 4740 atgttgccac aaattacaca aagaagcgca acgagttcca acccttcact caggaggttg 4800 tcgactttat aaatggacct ggaacaaaaa tcccctactg cccatgggta tttgatagac 4860 cggcttgtgg gtattcatcc cccaacgctt tgttcgagaa accaaccaca ctggctgacg 4920 tcattcacat gcaggcttct gatggtttgc acaacatcaa caatgccatt gagggttttg 4980 ggagctcact gaagggtcag cttgtgtcac cacctactga atccaccagg caacgtttcg 5040 ataagctgtt tggtagtggc agctttgagc tcattgggca gatgaacaaa ggcttaatcg 5100 acaagcacgt gattgttggg gaaaacgatg atgtttatga cttcatgcgc gagcacccaa 5160 catttacttg gttgaaagat ttcatgaatg agtatgcgcc tagtgttttg tcttattctg 5220 cttactacaa ggacctttgt aagtataatc gtgcaaaaca cgtgctcact tacaacccag 5280 aagagctcca ttgtgcgacg aaaggactga tcaagatgtt ggaagacgct ggcttgacac 5340 aaggcagtgt gaggacaccc caacaagttg tttcggacat tcaatggaac acttccgctg 5400 gaccgagtta tcaagggaag aaacgcgacc tctgtgccca cttgagcgat gacgaggtgc 5460 tgcatcttgc tgaggtttgt cgtcagcaat ttcttgaggg caagtcaact ggagtgtgga 5520 acggttctct gaaagctgag ttgagaacca ttgagaaagt tgaggcggag aaaacgcgcg 5580 ttttcacggc ttctcccata acaagcctgt ttgccatgaa attctacgtt gatgacttta 5640 acaagaagtt ctatgctact aatctgaaag ccccccacac tgttggcatc aataagttcg 5700 gtaggggatg ggaaaaattg catgacaagc ttaatcgccc tggatggttg cacggcagtg 5760 gagatggttc taggttcgat agttctatcg atcctttctt cttcgacgtt gtgaaaacta 5820 ttcgcaagca ctttctccct tctgagcatc ataaagccat tgatctcata tatgatgaga 5880 ttctcaacac aaccatctgc ctggctaatg ggatggttat caggaagaat gttggaaaca 5940 atagcgggca gcctagtact gttgttgaca acacactcgt gcttatgact gcattcctct 6000 acgcatacat tcacaagaca ggggatcgtg agttagcctt gctaaacgag cgtttcatcc 6060 ttgtttgcaa cggtgatgac aataagtttg ccatatctcc gcagtttgat gaagagtttg 6120 ggcacgattt ttccccagaa cttgttgaac ttggacttac gtatgagttt gatgacatca 6180 ctagcgacat ttgcgagaat ccttatatgt ccctcactat ggttaaaact ccttttggtg 6240 ttggtttctc tcttcccgtg gaaagaatca tagccataat gcagtggtcc aagaaagggg 6300 gggttttgca ctcatattta gctggcatct ctgcgattta cgaatccttc gacacaccaa 6360 aactcttcaa atcaatctat gcgtaccttc tttggctcac tgaggagcat gaggcagaaa 6420 ttcttgcagc tatgactcaa tcctcaaccg ctcttcctat accatcaatg ctcgatgttt 6480 atcggttgca ctatggtgat gatgaaattt ggctgcaagc agctgatcct ctcactgatg 6540 cgcaaaaaga agctgcacac actgccgcag ctgatagagc acgcctcgac ctagccgatg 6600 ccgatcgtag acgtaaagtt gaagcggacc gtgtggaagc ggcaagagtt aagaaggcag 6660 ctgatgctgt gctaaaacca gttaacctta cagcaacacg catgcccaca gaagatgatg 6720 gcaaactcaa aacgccatct ggtgctagaa taccatcatc agctgcagat ggtaactgga 6780 gcgtgccggc aacgaagcaa gttaacgctg gtttaacact taaaattccc ctgaataagc 6840 tcaaaagcgt gcctaagtct gttatggaac ataacaactc agttgcactt gaatctgagc 6900 taaaagcctg gactgatgct gtgcgcacaa gtttaggtat cacaactgat gaggcatgga 6960 tcgatgccct catacccttc atcggatggt gctgcaacaa tggcacctca gacaagcatg 7020 ctgagaatca agtaatgcaa atcgacagcg gaaagggagc tgtcacagag atgagtctgt 7080 ccccatttat tgttcatgct cgaatgaatg gtggactccg aaggatcatg cgtaactaca 7140 gtgatgaaac cgtcttactc atcacaaaca acaaactagt tgcacattgg tcaatgaagc 7200 atggcgcttc tgcaaatgca aaatatgctt tcgatttctt cgtcccacga tcatggatga 7260 acccacagga tatcgaagta tcaaagcaag cgcgcttagc agcacttgga actggaacgt 7320 ataacaccat gttaacttcc gacactacca atctgcgtaa gacaaccaac cacagggttc 7380 tggactcaga tggacaccca gaactaacct aaaccatcac cccgttccta aaacatcacc 7440 cacccccact cataaatcaa tccttaaata atgttcgtga cgtcctttta tcaggctcgg 7500 ggcgggtcta tgatccaaat acctttggca gttacaatgt cagcattctc attgaggagg 7560 atgacagcgt tgatcaaccg tttttaatca tccctcgttg gatggtggtt cacttagttc 7620 aattacgagg accagaaggt aat 7643 //