ID   AJ508781; SV 1; linear; genomic DNA; STD; VRL; 1134 BP.
XX
AC   AJ508781;
XX
DT   24-SEP-2004 (Rel. 81, Created)
DT   27-JUN-2005 (Rel. 84, Last updated, Version 2)
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DE   Sinaloa tomato leaf curl virus AV1 gene, AC3 gene (partial) and AC2 gene
DE   (partial), isolate NI3
XX
KW   AC2 gene; AC3 gene; AV1 gene; coat protein; replication enhancer;
KW   transcriptional activator.
XX
OS   Tomato leaf curl Sinaloa virus
OC   Viruses; Geminiviridae; Begomovirus.
XX
RN   [1]
RP   1-1134
RA   Kvarnheden A.;
RT   ;
RL   Submitted (24-SEP-2002) to the INSDC.
RL   Kvarnheden A., Dept of Plant Biology, Swedish Univ of Agricultural
RL   Sciences, P.O. Box 7080, SE-750 07 Uppsala, SWEDEN.
XX
RN   [2]
RX   DOI; 10.1007/s00705-005-0509-x.
RX   PUBMED; 15789265.
RA   Rojas A., Kvarnheden A., Marcenaro D., Valkonen J.P.T.;
RT   "Sequence characterization of tomato leaf curl Sinaloa virus and tomato
RT   severe leaf curl virus: phylogeny of New World begomoviruses and detection
RT   of recombination";
RL   Arch. Virol. 150(7):1281-1299(2005).
XX
DR   MD5; ce73b3b2c4138b2731cbe2fc6b53e482.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1134
FT                   /organism="Tomato leaf curl Sinaloa virus"
FT                   /host="Lycopersicon esculentum"
FT                   /isolate="NI3"
FT                   /mol_type="genomic DNA"
FT                   /country="Nicaragua:Sebaco"
FT                   /note="component A"
FT                   /db_xref="taxon:71186"
FT   CDS             200..955
FT                   /transl_table=1
FT                   /gene="AV1"
FT                   /product="coat protein"
FT                   /db_xref="GOA:Q65CG9"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="InterPro:IPR000650"
FT                   /db_xref="UniProtKB/TrEMBL:Q65CG9"
FT                   /protein_id="CAD48521.1"
FT                   /translation="MPKRDAPWRSFAATSKVSRNANYSPRAGMGPKVDKATAWVNRPMY
FT                   RKPRIYRVMRGPDVPKGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGLTHRVGKRF
FT                   CVKSVYILGKVWMDDNIKLKNHTNSVMFWLVRDRRPYGIPMDFGQVFNMFDNEPSTATI
FT                   KNDLRDRFQVMHGFYAKVTGGQYASNEQAIVRRFWKVNNHVVYNHQEAGKYDNHTENAL
FT                   LLYMACTHASNPVYATLKIRIYFYDSIAN"
FT   CDS             complement(952..>1134)
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /gene="AC3"
FT                   /product="replication enhancer"
FT                   /db_xref="GOA:Q65CG8"
FT                   /db_xref="InterPro:IPR000657"
FT                   /db_xref="UniProtKB/TrEMBL:Q65CG8"
FT                   /protein_id="CAD48522.1"
FT                   /translation="TLITASGSNYLARFRHLVNMYLDQLGVISINNVIRAVRFATDRSY
FT                   VNYVLEDHSIKIKLY"
FT   CDS             complement(1097..>1134)
FT                   /codon_start=3
FT                   /transl_table=1
FT                   /gene="AC2"
FT                   /product="transcriptional activator"
FT                   /db_xref="UniProtKB/TrEMBL:Q65CG7"
FT                   /protein_id="CAD48523.1"
FT                   /translation="IDNSFWVELFS"
XX
SQ   Sequence 1134 BP; 312 A; 236 C; 259 G; 327 T; 0 other;
     tattacctga tggccgcgcg atttcccccc ccctacacgc gcgtacgctc ctctttaatt        60
     tgaattaaag tgtattagtg cgctgtcgtc caatcatatt gcgtctgacg agtctagata       120
     tttgcaacaa ctttgggccc aagttgttga gtgtctgcta taaattaaag aggctttggc       180
     ccactgactt taactcaaaa tgcctaagcg tgatgcccca tggcgctcgt tcgcggcaac       240
     ttccaaggtt agtcgcaatg ctaattattc tccacgggct ggtatggggc caaaggtcga       300
     caaggccact gcttgggtga ataggcccat gtatagaaag cccaggatct accgggttat       360
     gagaggccca gatgttccaa aaggatgtga aggcccatgt aaggtccagt catacgagca       420
     gcgccacgat atttcacatg ttgggaaggt catgtgtatc tccgacgtga cacgtggtaa       480
     tggtctcacc caccgtgtgg ggaagcgttt ttgtgttaag tccgtgtata ttctcggcaa       540
     ggtttggatg gatgataaca tcaagttgaa gaaccacacg aacagtgtta tgttttggct       600
     ggtcagggac cgtaggcctt atggtattcc tatggatttc ggacaagtgt ttaacatgtt       660
     cgataacgaa cccagtaccg cgacgatcaa gaacgatctt agagatcggt ttcaggtcat       720
     gcacgggttt tatgctaagg ttacaggtgg acagtatgct agcaacgagc aagctatagt       780
     gaggcgtttt tggaaggtca acaatcatgt ggtctacaat catcaagagg caggaaaata       840
     tgacaaccat actgagaacg ccctgttatt gtatatggca tgtactcatg cttctaaccc       900
     cgtgtatgca acattgaaaa ttcggatcta tttttatgat tcgattgcta attaataaag       960
     ttttattttt attgaatgat cttcaagtac ataatttaca tatgatctgt ctgttgcaaa      1020
     acgaacagct ctgattacat tgtttatcga aatcacacct aactgatcta aatacatatt      1080
     aactaaatgt ctaaacctag ctaaataatt cgacccagaa gctgttatca atgt            1134
//