ID   AJ495841; SV 1; linear; genomic RNA; STD; VRL; 2228 BP.
XX
AC   AJ495841;
XX
DT   17-DEC-2002 (Rel. 74, Created)
DT   17-DEC-2002 (Rel. 74, Last updated, Version 1)
XX
DE   Cucumber mosaic virus from Lily, Korean isolate, complete genomic segment
DE   RNA3
XX
KW   3a gene; capsid protein; complete genome; CP gene; movement protein.
XX
OS   Cucumber mosaic virus (cucumber mosaic cucumovirus)
OC   Viruses; Riboviria; Bromoviridae; Cucumovirus.
XX
RN   [1]
RP   1-2228
RA   Choi S.K.;
RT   ;
RL   Submitted (16-JUL-2002) to the INSDC.
RL   Choi S.K., Graduate School of Biotechnology, Korea University, 5 Ga 1,
RL   Anamdong Sungbukku, Seoul, 136-701, SOUTH KOREA.
XX
RN   [2]
RA   Choi S.K., Yoon J.Y., Ryu K.H., Choi J.K., Park W.M.;
RT   "Molecular and biological chracterization of Cucumber mosaic virus isolates
RT   from lilies";
RL   Unpublished.
XX
DR   MD5; 315452d72ec70e49114f2d450990b0f9.
DR   EuropePMC; PMC3550734; 23637513.
DR   RFAM; RF01084; TLS-PK3.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2228
FT                   /organism="Cucumber mosaic virus"
FT                   /host="Lily (Lilum oriental hybrid L. Marcopolo, Korean
FT                   common cultivated lily )"
FT                   /isolate="LK"
FT                   /mol_type="genomic RNA"
FT                   /country="South Korea:Seoul"
FT                   /db_xref="taxon:12305"
FT   5'UTR           1..119
FT                   /gene="3a"
FT   CDS             120..959
FT                   /gene="3a"
FT                   /product="movement protein"
FT                   /function="cell to cell movement"
FT                   /db_xref="InterPro:IPR000603"
FT                   /db_xref="UniProtKB/TrEMBL:Q8B3N3"
FT                   /experiment="experimental evidence, no additional details
FT                   recorded"
FT                   /protein_id="CAD42337.1"
FT                   /translation="MAFQGTSRTLTQQSSAATSDDLQKILFSPEAIKKMATECDLGRHH
FT                   WMRADNAISVRPLVPEVTHGRIASFFKSGYDVGELCSKGYMSVPQVLCAVTRTVSTDAE
FT                   GSLRIYLADLGDKELSPIDGQCVSLHNHDLPALVSFQPTYDCPMETVGNRKRCFAVVIE
FT                   RHGYVGYTGTTASVCSNWQARFSSKNNNYTHIAAGKTLVLPFNRLAEQTKPSAVARLLK
FT                   SQLNNIESSQYVLTNARINQNARSESEELNVESPPAAIGSSSASRSEAFRPQVVNGL"
FT   misc_feature    960..1260
FT                   /note="RNA3 intercistronic region"
FT                   /experiment="experimental evidence, no additional details
FT                   recorded"
FT   CDS             1261..1917
FT                   /gene="CP"
FT                   /product="capsid protein"
FT                   /function="RNA encapsidation"
FT                   /db_xref="GOA:Q8B3N2"
FT                   /db_xref="InterPro:IPR000247"
FT                   /db_xref="InterPro:IPR023800"
FT                   /db_xref="InterPro:IPR037137"
FT                   /db_xref="UniProtKB/TrEMBL:Q8B3N2"
FT                   /experiment="experimental evidence, no additional details
FT                   recorded"
FT                   /protein_id="CAD42338.1"
FT                   /translation="MDKSESTSAGRSRRRRPRRGSRSALSSADANFRVLSQQLSRLNKT
FT                   LAAGRPTINHPTFVGSERCKPGYTFTSITLKPPKIDRGSYYGKRLLLPDSVTEYDKKLV
FT                   SRIQIRVNPLPKFDSTVWVTVRKVPASSDLSVAAISAMFADGASPVLVYQYAASGVQAN
FT                   NKLLYDLSAMRADIGDMRKYAVLVYSKDDALETDELVLHVDVEHQRIPTSGVLPV"
FT   3'UTR           1918..2228
FT                   /gene="CP"
XX
SQ   Sequence 2228 BP; 518 A; 523 C; 532 G; 654 T; 1 other;
     gtaatcttac cactgtgtgt gtgtgtgtgt gtgtgtgtcg cgtcgtgtcg tgttgtccgc        60
     acatttgagt cgtgctgtcc gcacatttat ctgtgtcagt gtgttagatt acccgaggca       120
     tggctttcca aggtaccagt aggactttaa ctcaacagtc ctcagcggct acgtctgacg       180
     atcttcaaaa gatattattt agccctgaag ccattaagaa aatggctact gagtgtgacc       240
     taggccggca tcactggatg cgcgctgata acgctatttc agtccggccc ctcgttcccg       300
     aagtaaccca cggtcgtatt gcttccttct ttaagtctgg atatgatgtt ggtgaattat       360
     gctctaaagg ttatatgagc gtccctcaag tattgtgtgc tgttactcga acagtttcca       420
     ccgatgctga aggatctttg agaatttacc tggctgatct aggcgacaag gagttatctc       480
     cgatagacgg acaatgcgtc tcattacata atcatgatct tcccgcttta gtgtctttcc       540
     aaccgacgta tgattgtcct atggagacag ttgggaatcg taagcggtgt tttgcggttg       600
     ttatcgaaag acatggttat gttgggtata ccggcaccac agctagcgtg tgtagtaatt       660
     ggcaagcacg gttctcttct aagaacaaca actacactca tatcgcagct gggaagactc       720
     tagtactgcc tttcaacaga ttagctgagc aaacaaaacc gtcagctgtc gctcgcctgt       780
     tgaagtcgca attgaacaat atcgaatctt cgcaatacgt tttaacgaat gcgaggatta       840
     atcaaaatgc gcgcagtgag tccgaggaat taaatgttga aagccctccc gccgcaatcg       900
     ggagttcttc cgcgtcccgc tccgaagcct tcagaccgca ggtggttaac ggtctttagc       960
     actttggtgc gtattagtat atatttgtgt gtgtgtcttt acacacttta taatatatct      1020
     atagtgtcct gtgtgagttg atacagtaga catctgtgac gcgatgccgt gttgagaagg      1080
     gaacacatct ggttttagta agtccacatc atagttttga ggttcaattc ctcttgctcc      1140
     ctgttgggat ccttactttc tcatggatgc ttctccgcga gattgcgtta ttgtctactg      1200
     actatataga gagagtttgt gctgtgtttt ctcttttgtg tcgtagaatt gagtcgagtc      1260
     atggacaaat ctgaatcaac cagtgccggt cgtagccgtc gacgtcgtcc gcgtcgtggt      1320
     tcccgctccg ccctctcctc ngcggatgct aactttagag tcttgtcgca acagctttcg      1380
     cgacttaata agacgttagc agctggtcgt ccaactatta accacccaac ctttgtaggg      1440
     agtgaacgct gtaaacctgg gtacacgttc acatctatca ccctaaagcc accaaaaata      1500
     gaccgtgggt cttattatgg taaaaggttg ttattacctg attcagtcac ggaatatgat      1560
     aagaaacttg tttcgcgcat tcaaattcga gttaatcctt tgccgaaatt tgattcaacc      1620
     gtgtgggtga cagtccgtaa agttcctgcc tcctcggact tatccgttgc cgccatctct      1680
     gctatgtttg cggacggagc ctcaccggta ctggtttatc agtacgctgc atctggagtc      1740
     caagctaaca acaaactgtt gtatgatctt tcggcgatgc gcgctgatat aggcgacatg      1800
     agaaagtacg ccgtcctcgt gtattcaaaa gacgatgcac tcgagacaga cgagttagta      1860
     cttcatgttg acgtcgagca ccaacgtatt cccacatccg gagtgctccc agtctgattc      1920
     cgtgttccca ggaccctccc tccatttttg gcgggagctg agttggcagt attgctacaa      1980
     actgtctgaa gtcgttaaat cagtgtgtca ttgtacacat tgtggcgaac gggttgtcca      2040
     tccagcttac ggctaaaatg gtcagtcgtg gagaaatcca cgccagtaga cttacaagtc      2100
     tctgaggcac ccttgaaacc atctcctagg tttcttcgga aggacttcgg tccgtgtact      2160
     tctagcacaa tgtgctagtt tagagtacgg gtgtccccca ctttcgtggg gctttcgcaa      2220
     ggagacca                                                               2228
//