Dbfetch
ID AJ491262; SV 1; linear; mRNA; STD; VRL; 672 BP. XX AC AJ491262; XX DT 01-AUG-2003 (Rel. 76, Created) DT 01-AUG-2003 (Rel. 76, Last updated, Version 1) XX DE Sugarcane yellow leaf virus gene for capsid protein (partial), gene for DE movement protein and gene for aphid transmission factor (partial), genomic DE RNA, isolate Haw2 XX KW aphid transmission factor; capsid protein; movement protein; ORF3; ORF4; KW ORF5. XX OS Sugarcane yellow leaf virus OC Viruses; Riboviria; Luteoviridae; Polerovirus. XX RN [1] RP 1-672 RA Borg Z.; RT ; RL Submitted (21-JUN-2002) to the INSDC. RL Borg Z., Biotechnology, Bureau of Sugar Experiment Stations, PO Box 86, RL Indooroopilly, Queensland 4068, AUSTRALIA. XX RN [2] RA Borg Z., Braithwaite K.S., Smith G.R.; RT "Sequence variation in isolates of Sugarcane yellow leaf virus"; RL Unpublished. XX DR MD5; cbe88fd3a46f2e1b1b7de1c7233451a1. XX FH Key Location/Qualifiers FH FT source 1..672 FT /organism="Sugarcane yellow leaf virus" FT /host="Saccharum hybrid cultivar H87-4094" FT /isolate="Haw2" FT /mol_type="mRNA" FT /country="USA:Hawaii" FT /db_xref="taxon:94290" FT CDS <1..570 FT /codon_start=1 FT /product="capsid protein" FT /note="ORF3" FT /db_xref="GOA:Q7T6N5" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q7T6N5" FT /protein_id="CAD36147.1" FT /translation="SRRNVRRRANRRRQTRPVVVVRAPPGPRRVRRRRARVGGNAVRGP FT GGRSNRDVLTFTVDDLKANSTGILKFGPNLSQYAAFNNGLLKAYHEYKITSLTIQYNSC FT SSDATPGAIALEVDTSCSQTTTGSKITSFPVKRNAKKVFPAPFIRGKDFMTTSADQFWL FT LYKGNGDSSLAGQFVCRFECLFQNPK" FT CDS <1..>672 FT /transl_except=(pos:568..570,aa:OTHER) FT /product="aphid transmission factor" FT /note="ORF5" FT /note="occassional readthrough of TAG stop codon" FT /db_xref="GOA:Q7T6N4" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q7T6N4" FT /protein_id="CAD36149.2" FT /translation="SRRNVRRRANRRRQTRPVVVVRAPPGPRRVRRRRARVGGNAVRGP FT GGRSNRDVLTFTVDDLKANSTGILKFGPNLSQYAAFNNGLLKAYHEYKITSLTIQYNSC FT SSDATPGAIALEVDTSCSQTTTGSKITSFPVKRNAKKVFPAPFIRGKDFMTTSADQFWL FT LYKGNGDSSLAGQFVCRFECLFQNPKXVSDAPPTPTPTPTPPGPTPAPASKYLGYQGVP FT NN" FT CDS 11..463 FT /product="movement protein" FT /note="ORF4" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:Q9WI47" FT /protein_id="CAD36148.1" FT /translation="MSEDALTVVDRLGQWSWSGLPQDLDEYDDVEHVLEETLCEDREEE FT ATGMFSLSRLTISKPTQPGSSNSDRTYLSTQRSTMAYSKPTMSIKSQVSLFSITHAPPT FT QLQVQSHLKWIHPAPKQQQAPRLLASPSRGTPRKSSRPPSSGGKIS" XX SQ Sequence 672 BP; 187 A; 200 C; 155 G; 130 T; 0 other; tcacgaagga atgtcagaag acgcgctaac cgtcgtagac agactcggcc agtggtcgtg 60 gtccgggctc ccccaggacc tagacgagta cgacgacgta gagcacgtgt tggaggaaac 120 gctgtgcgag gaccgggagg aagaagcaac cgggatgttc tcactttcac ggttgacgat 180 ctcaaagcca actcaaccgg gatcctcaaa ttcggaccga acctatctca gtacgcagcg 240 ttcaacaatg gcttactcaa agcctaccat gagtataaaa tcacaagtct cactattcag 300 tataactcat gctcctccga cgcaactcca ggtgcaatcg cacttgaagt ggatacatcc 360 tgctcccaaa caacaacagg ctccaagatt actagcttcc ccgtcaagag gaacgccaag 420 aaagtcttcc cggccccctt catcaggggg aaagatttca tgactacgtc agctgaccag 480 ttttggttgc tgtacaaagg gaatggagac tcgagcctag caggacaatt cgtttgccga 540 tttgaatgcc ttttccagaa tcccaaatag gtaagcgacg ctcccccaac acccacccca 600 acaccaaccc cacccggtcc gaccccggca ccggcttcta agtatcttgg ataccaagga 660 gtgccgaaca ac 672 //