ID   AJ491259; SV 1; linear; mRNA; STD; VRL; 672 BP.
XX
AC   AJ491259;
XX
DT   01-AUG-2003 (Rel. 76, Created)
DT   01-AUG-2003 (Rel. 76, Last updated, Version 1)
XX
DE   Sugarcane yellow leaf virus gene for capsid protein (partial), gene for
DE   movement protein and gene for aphid transmission factor (partial), genomic
DE   RNA, isolate USA1
XX
KW   aphid transmission factor; capsid protein; movement protein; ORF3; ORF4;
KW   ORF5.
XX
OS   Sugarcane yellow leaf virus
OC   Viruses; Riboviria; Luteoviridae; Polerovirus.
XX
RN   [1]
RP   1-672
RA   Borg Z.;
RT   ;
RL   Submitted (21-JUN-2002) to the INSDC.
RL   Borg Z., Biotechnology, Bureau of Sugar Experiment Stations, PO Box 86,
RL   Indooroopilly, Queensland 4068, AUSTRALIA.
XX
RN   [2]
RA   Borg Z., Braithwaite K.S., Smith G.R.;
RT   "Sequence variation in isolates of Sugarcane yellow leaf virus";
RL   Unpublished.
XX
DR   MD5; 27eb707b72c355b9e778c3b74ae420e7.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..672
FT                   /organism="Sugarcane yellow leaf virus"
FT                   /host="Saccharum hybrid cultivar CP81-1405"
FT                   /isolate="USA1"
FT                   /mol_type="mRNA"
FT                   /country="USA"
FT                   /db_xref="taxon:94290"
FT   CDS             <1..570
FT                   /codon_start=1
FT                   /product="capsid protein"
FT                   /note="ORF3"
FT                   /db_xref="GOA:Q7T6P1"
FT                   /db_xref="InterPro:IPR001517"
FT                   /db_xref="InterPro:IPR029053"
FT                   /db_xref="UniProtKB/TrEMBL:Q7T6P1"
FT                   /protein_id="CAD36138.1"
FT                   /translation="SRRNVRRRANRRRQTRPVVVVRAPPGPRRVRRRRARVGGNAVRGP
FT                   GGRSNRDVLTFTVDDLKANSTGILKFGPNLSQYAAFNNGLLKAYHEYKITSLTIQYNSC
FT                   SSDATPGAIALEVDTSCSQTTTGSKITSFPVKRNAKKVFPAPFIRGKDFMTTSADQFWL
FT                   LYKGNGDXSLAGQFVCRFECLFQNPK"
FT   CDS             <1..>672
FT                   /transl_except=(pos:568..570,aa:OTHER)
FT                   /product="aphid transmission factor"
FT                   /note="ORF5"
FT                   /note="occassional readthrough of TAG stop codon"
FT                   /db_xref="GOA:Q7T6P0"
FT                   /db_xref="InterPro:IPR001517"
FT                   /db_xref="InterPro:IPR029053"
FT                   /db_xref="UniProtKB/TrEMBL:Q7T6P0"
FT                   /protein_id="CAD36140.2"
FT                   /translation="SRRNVRRRANRRRQTRPVVVVRAPPGPRRVRRRRARVGGNAVRGP
FT                   GGRSNRDVLTFTVDDLKANSTGILKFGPNLSQYAAFNNGLLKAYHEYKITSLTIQYNSC
FT                   SSDATPGAIALEVDTSCSQTTTGSKITSFPVKRNAKKVFPAPFIRGKDFMTTSADQFWL
FT                   LYKGNGDXSLAGQFVCRFECLFQNPKXVGDAPPTPTPTPTPXAPTPAPAPKSFGYQGVP
FT                   NN"
FT   CDS             11..463
FT                   /product="movement protein"
FT                   /note="ORF4"
FT                   /db_xref="InterPro:IPR001964"
FT                   /db_xref="UniProtKB/TrEMBL:Q9WI47"
FT                   /protein_id="CAD36139.1"
FT                   /translation="MSEDALTVVDRLGQWSWSGLPQDLDEYDDVEHVLEETLCEDREEE
FT                   ATGMFSLSRLTISKPTQPGSSNSDRTYLSTQRSTMAYSKPTMSIKSQVSLFSITHAPPT
FT                   QLQVQSHLKWIHPAPKQQQAPRLLASPSRGTPRKSSRPPSSGGKIS"
XX
SQ   Sequence 672 BP; 185 A; 200 C; 155 G; 130 T; 2 other;
     tcacgaagga atgtcagaag acgcgctaac cgtcgtagac agactcggcc agtggtcgtg        60
     gtccgggctc ccccaggacc tagacgagta cgacgacgta gagcacgtgt tggaggaaac       120
     gctgtgcgag gaccgggagg aagaagcaac cgggatgttc tcactttcac ggttgacgat       180
     ctcaaagcca actcaaccgg gatcctcaaa ttcggaccga acttatctca gtacgcagcg       240
     ttcaacaatg gcttactcaa agcctaccat gagtataaaa tcacaagtct cactattcag       300
     tataactcat gctcctccga cgcaactcca ggtgcaatcg cacttgaagt ggatacatcc       360
     tgctcccaaa caacaacagg ctccaagatt actagcttcc ccgtcaagag gaacgccaag       420
     aaagtcttcc cggccccctt catcaggggg aaagatttca tgactacgtc agctgaccag       480
     ttttggttgc tgtacaaagg gaatggagac tygagcctag caggacaatt cgtctgccga       540
     tttgaatgcc ttttccagaa tcccaaatag gtaggcgacg ctcccccaac acccacccca       600
     acaccaaccc cacstgctcc gaccccggca ccggctccca agtcttttgg ataccaagga       660
     gtgccgaaca ac                                                           672
//