ID   AJ488151; SV 1; linear; mRNA; STD; VRL; 1609 BP.
XX
AC   AJ488151;
XX
DT   23-MAY-2003 (Rel. 75, Created)
DT   23-MAY-2003 (Rel. 75, Last updated, Version 1)
XX
DE   Shallot yellow stripe virus partial gene for polyprotein, genomic RNA
XX
KW   coat protein; NIb protein; polyprotein.
XX
OS   Shallot yellow stripe virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1609
RA   Adams M.J.;
RT   ;
RL   Submitted (23-MAY-2002) to the INSDC.
RL   Adams M.J., Plant Pathogen Interactions Division, IACR-Rothamsted,
RL   Harpenden, Herts AL5 2JQ, UNITED KINGDOM.
XX
RN   [2]
RA   Chen J., Chen J., Adams M.J.;
RT   "Characterization of potyviruses from vegetables in China";
RL   Unpublished.
XX
DR   MD5; fba0fd9f0c267529cbf61de4b8995a46.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1609
FT                   /organism="Shallot yellow stripe virus"
FT                   /host="Allium porrum"
FT                   /isolate="Hangzhou L"
FT                   /mol_type="mRNA"
FT                   /country="China:Zhejiang"
FT                   /db_xref="taxon:62059"
FT   CDS             <1..1413
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:Q7TGA8"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:Q7TGA8"
FT                   /protein_id="CAD32464.1"
FT                   /translation="GNNSGQPSTVVDNTLMVMLSVQYTLLKNDIKFMEQESIVRYFCNG
FT                   DDLLIAIHPDHSHILDSFTKHFADLGLEYDFSSRTTNREELYFMSHRGLLRDGVYIPKL
FT                   DKERIVSILEWDRAKEPEHRLEAICAAMVEAWGYDELLHEIRLFYKWVLEQAPYNLIAQ
FT                   TGKAPYIAETALKRLYMDEQATESELEKYSRLYQILDEQIPTPSYVSYQASETEDAANV
FT                   NTDKQVGKNKDKDRDVDVGTSGEFSVPKVKMLSDKMRLPRVGKKVILNGKHLLSYKPDQ
FT                   VDLYNTRATHAQFKTWYDAVKLEYELTDEQMKIVMNGLMVWCIENGTSQNLTGVWTMMD
FT                   GDNQMEYPLSPIIDNAKPTFRQIMAHFSDAAEAYIEYRNATEKYMPRYGLQRNLREYSL
FT                   ARYAFDFYEMNSKTPIRAKEAHMQMKAAAVRGVANRMFGLDGNISTDDENTERHTAADV
FT                   NKDHHTLLGLRM"
FT   mat_peptide     <1..636
FT                   /product="NIb protein"
FT   mat_peptide     637..1410
FT                   /product="coat protein"
FT   3'UTR           1414..1609
XX
SQ   Sequence 1609 BP; 547 A; 294 C; 365 G; 403 T; 0 other;
     gggaataata gtgggcaacc ttctacggtg gtggacaata cactaatggt gatgcttagt        60
     gttcaataca cattattaaa gaatgatatt aaatttatgg agcaagaatc catcgtaaga       120
     tacttttgta atggtgatga cctccttatt gcaatccatc cagatcacag tcatatacta       180
     gattcattta cgaaacattt tgctgacttg ggtcttgaat atgatttttc gagccgaacc       240
     acgaatcgag aagagttgta cttcatgtct cacagaggct tgctaaggga tggtgtctat       300
     atacccaaac ttgataaaga acgcatagtt tctatacttg agtgggacag agctaaagaa       360
     ccagaacatc gactggaagc tatttgtgcc gccatggtgg aggcgtgggg atatgacgaa       420
     ctattacacg aaattagatt attttacaag tgggtattag agcaagcacc atacaattta       480
     atagcacaaa ctggaaaggc accatacata gcagaaacgg cgctaaaacg actgtacatg       540
     gatgaacaag caactgaaag cgagctagaa aagtacagcc gactctatca aatattagat       600
     gagcaaatac caacaccaag ttacgtatca tatcaagcat cagaaacaga agatgctgca       660
     aacgtcaaca ctgacaagca agttggaaag aataaagaca aggacaggga tgttgatgtt       720
     ggcacgtcag gcgagttttc ggtaccaaag gtgaaaatgt tatcagacaa aatgcgatta       780
     ccacgagttg ggaagaaggt gatactcaat ggcaaacatc ttctttcgta caagcccgat       840
     caggttgact tatacaatac aagggcaaca catgcacagt tcaagacatg gtatgatgca       900
     gttaaactcg aatacgaact aacagacgaa caaatgaaaa tagtcatgaa tgggttaatg       960
     gtgtggtgta ttgagaatgg aacatcacaa aacttgacgg gtgtttggac gatgatggat      1020
     ggcgataacc agatggaata tccactcagc cccattattg ataacgcaaa gcccactttt      1080
     agacaaataa tggcacattt tagtgacgca gctgaagcgt acattgaata tagaaatgcc      1140
     acagaaaaat acatgccccg gtatggactt cagcgaaact taagagaata cagcttagca      1200
     cgttacgcgt tcgactttta tgagatgaat tcaaagacgc cgatccgcgc gaaggaagct      1260
     cacatgcaga tgaaagcagc agcggtcaga ggggtagcta accgcatgtt tggcttggac      1320
     ggtaacataa gcaccgatga tgagaacaca gaacgacata cagcagccga tgtgaataag      1380
     gatcaccaca cgctgctcgg tcttcgtatg taattaaaca tatatatatt taatatatag      1440
     tgtcgtgcat tatctttcgt tatatttgaa tatgagcaaa catagtgtgg ttgaaccacc      1500
     gtttgtggcg tagtatatga tataacttcg ctagcattat ttgcaccatg aaacttagtg      1560
     tggtcatacc acgtaaagag ttaagtgttg tacgttttgt tagggagac                  1609
//