ID AJ459382; SV 1; linear; genomic RNA; STD; VRL; 3429 BP. XX AC AJ459382; XX DT 19-DEC-2002 (Rel. 74, Created) DT 19-DEC-2002 (Rel. 74, Last updated, Version 1) XX DE Channa lucius virus genomic segment A for polyprotein and VP5 protein, DE genomic RNA XX KW polyprotein; VP2 protein; VP2a protein; VP2b protein; VP2c protein; KW VP2d protein; VP3 protein; VP4 protein; VP5 protein; X protein. XX OS Blotched snakehead virus OC Viruses; Riboviria; Birnaviridae; Blosnavirus. XX RN [1] RP 1-3429 RA Delmas B.; RT ; RL Submitted (30-APR-2002) to the INSDC. RL Delmas B., Sante Animale, Institut National Recherche Agronomique, Unite RL VIM, Batiment de Biotechnologies, INRA, 78350 Jouy-en-Josas, FRANCE. XX RN [2] RX DOI; 10.1128/JVI.77.1.719-725.2003. RX PUBMED; 12477876. RA Da Costa B., Soignier S., Chevalier C., Henry C., Thory C., Huet J.C., RA Delmas B.; RT "Blotched snakehead virus is a new aquatic birnavirus that is slightly more RT related to avibirnavirus than to aquabirnavirus"; RL J. Virol. 77(1):719-725(2003). XX DR MD5; 44cca22fe8ef921784fa30c38672191c. DR EuropePMC; PMC140569; 12477876. XX FH Key Location/Qualifiers FH FT source 1..3429 FT /organism="Blotched snakehead virus" FT /host="Blotched Snakehead fish" FT /mol_type="genomic RNA" FT /country="Viet Nam" FT /note="segment A" FT /db_xref="taxon:311176" FT CDS 166..3375 FT /transl_table=1 FT /product="polyprotein" FT /db_xref="GOA:Q8AZM0" FT /db_xref="InterPro:IPR002662" FT /db_xref="InterPro:IPR002663" FT /db_xref="InterPro:IPR025775" FT /db_xref="InterPro:IPR029053" FT /db_xref="PDB:2GEF" FT /db_xref="UniProtKB/Swiss-Prot:Q8AZM0" FT /experiment="experimental evidence, no additional details FT recorded" FT /protein_id="CAD30689.1" FT /translation="MDFSKENTQIRYLNSLLVPETGSTSIPDDTLDRHCLKTETTTENL FT VAALGGSGLIVLFPNSPSGLLGAHYTKTPQGSLIFDKAITTSQDLKKAYNYARLVSRIV FT QVRSSTLPAGVYALNGTFNGVTYIGSLSEIKDLDYNSLLSATANINDKVGNVLVGDGVA FT VLSLPAGSDLPYVRLGDEVPSSAGVARCSPSDRPRHYNANNKQVQVGTTDTKTNGFNID FT ATTPTEVTVDMQIAQIAAGKTLTVTVKLMGLTGAKVASRSETVSGNGGTFHFSTTAVFG FT ETEITQPVVGVQVLAKTNGDPIVVDSYVGVTVHGGNMPGTLRPVTIIAYESVATGSVLT FT LSGISNYELIPNPELAKNIQTSYGKLNPAEMTYTKVVLSHRDELGLRSIWSIPQYRDMM FT SYFREVSDRSSPLKIAGAFGWGDLLSGIRKWVFPVVDTLLPAARPLTDLASGWIKNKYP FT EAASGRPLAASGRPMAASGTFSKRIPLASSDEIDYQSVLALTIPGTHPKLVPPTEREPN FT STPDGHKITGAKTKDNTGGDVTVVKPLDWLFKLPCLRPQAADLPISLLQTLAYKQPLGR FT NSRIVHFTDGALFPVVAFGDNHSTSELYIAVRGDHRDLMSPDVRDSYALTGDDHKVWGA FT THHTYYVEGAPKKPLKFNVKTRTDLTILPVADVFWRADGSADVDVVWNDMPAVAGQSSS FT IALALASSLPFVPKAAYTGCLSGTNVQPVQFGNLKARAAHKIGLPLVGMTQDGGEDTRI FT CTLDDAADHAFDSMESTVTRPESVGHQAAFQGWFYCGAADEETIEELEDFLDSIELHSK FT PTVEQPQTEEAMELLMELARKDPQMSKILVILGWVEGAGLIDALYNWAQLDDGGVRMRN FT MLRNLPHEGSKSQRRKHGPAPESRESTRMEVLRREAAAKRKKAQRISEDAMDNGFEFAT FT IDWVLENGSRGPNPAQAKYYKATGLDPEPGLTEFLPEPTHAPENKAAKLAATIYGSPNQ FT APAPPEFVEEVAAVLMENNGRGPNQAQMRELRLKALTMKSGSGAAATFKPRNRRPAQEY FT QPRPPITSRAGRFLNISTTLS" FT mat_peptide 169..1416 FT /product="VP2 protein" FT CDS 452..871 FT /product="VP5 protein" FT /db_xref="UniProtKB/Swiss-Prot:Q8AZL9" FT /protein_id="CAD30690.1" FT /translation="MPDLSAALCRCGAQRSPRVSTHSTGPSMGLPTLEVSARSRTWTTI FT HFSLQRPTSMTRSAMYLLETVSQCSHFLLEATCLMLDLAMKFQALLESRDALPPTDLGT FT TMPTTNRSRSARPTPRPMGSTSTQQHPQRSRSTCR" FT mat_peptide 1417..1545 FT /product="VP2a protein" FT mat_peptide 1546..1566 FT /product="VP2b protein" FT mat_peptide 1567..1587 FT /product="VP2c protein" FT mat_peptide 1588..1623 FT /product="VP2d protein" FT mat_peptide 1624..1836 FT /product="X protein" FT mat_peptide 1837..2538 FT /product="VP4 protein" FT /function="serine/lysine protease" FT mat_peptide 2539..3372 FT /product="VP3 protein" XX SQ Sequence 3429 BP; 978 A; 991 C; 870 G; 590 T; 0 other; ggaaagagag tgttgaccaa gggtgactcc cctaggtcac ccttgattgg tgcctaccac 60 ataggccact tccaaaacca atattcaaca ctgctaactg attttgacca agctttcaga 120 taattgcaac cagagtacta caaacaacta acatcaaacg ttcaaatgga tttctcaaag 180 gaaaatacac agatcagata ccttaactcc cttctcgttc cagagaccgg gtccacatcc 240 attccagatg acactcttga cagacattgt ctgaaaacag agaccacaac agaaaatcta 300 gtggcagctc tgggagggag cggactaatc gttctctttc caaactcacc atcaggccta 360 ctgggggcac attacaccaa aaccccccaa gggtctctaa tttttgacaa ggccatcaca 420 acatcccaag acctcaagaa agcgtacaac tatgccagac ttgtcagccg cattgtgcag 480 gtgcggagct caacgctccc cgcgggtgtc tacgcactca acgggacctt caatggggtt 540 acctacattg gaagtctcag cgagatcaag gacctggact acaattcact tctctctgca 600 acggccaaca tcaatgacaa ggtcggcaat gtacttgttg gagacggtgt cgcagtgctc 660 tcacttcctg ctggaagcga cctgccttat gttagacttg gcgatgaagt tccaagctct 720 gctggagtcg cgagatgctc tccctccgac agacctaggc actacaatgc caacaacaaa 780 caggtccagg tcggcacgac cgacaccaag accaatgggt tcaacatcga cgcaacaaca 840 cccacagagg tcacggtcga catgcagata gctcagatag ccgcagggaa gaccctcacg 900 gtaactgtca aactaatggg tctgactgga gccaaggtgg catccagatc agagacagtc 960 tccgggaatg gcgggacgtt ccacttcagc acgacagctg tgtttggaga gacggagatc 1020 acacaaccag tcgttggagt acaggttctc gccaagacga acggagaccc cattgtggtt 1080 gacagctacg tgggggtcac agtacatgga gggaacatgc ccggaacact gagacccgtg 1140 acaataattg cctacgagtc agtggcaaca ggcagcgttc tcacactcag cggcatttcc 1200 aactacgagc taataccaaa cccagaactg gcaaagaaca tccaaaccag ctacggcaaa 1260 ctcaatcctg cagagatgac ctacacgaaa gtggtactct cacacaggga tgaactaggg 1320 ctgaggtcga tctggtcaat cccccagtac agggacatga tgtcctactt cagggaagtt 1380 tcagaccgat catcacccct caagatagca ggggccttcg gttggggcga cctcctttct 1440 ggaatcagga agtgggtctt tccagtcgtg gacaccctgc tacccgcagc gagaccattg 1500 acagatttgg ccagcgggtg gataaagaac aagtatccgg aggctgcgtc cgggagaccg 1560 ctagccgcgt ctggcaggcc catggcggcg tcagggacct tctccaagag aatacccctg 1620 gccagctcag acgaaattga ctaccaatcg gttttagcat tgacaatccc cgggacgcac 1680 ccgaaactag ttccaccaac tgaaagagaa ccaaacagca ctcctgacgg acacaagata 1740 accggggcca agaccaagga caacacggga ggcgacgtca ccgttgtcaa gcctctggac 1800 tggctgttca aactgccatg cctgaggcca caagcggcgg acctgcccat cagcctcctg 1860 cagaccctgg cctacaaaca gccacttggc aggaactcga ggattgtcca tttcaccgac 1920 ggggccttgt tccccgtcgt tgcattcggt gacaatcact caacaagtga gctctacatc 1980 gcagtaaggg gcgaccacag agacctaatg tcgcccgacg tgcgagactc atatgcccta 2040 acaggagacg accacaaggt ttggggagca acacaccata catactacgt tgagggagcg 2100 cccaagaagc ccctgaagtt caacgtcaaa acccgaactg atctgaccat ccttccagta 2160 gcagatgtct tctggcgggc cgatggaagc gctgatgtcg atgtcgtctg gaacgacatg 2220 ccagcagtgg ctggccaaag cagctccatc gccctcgccc tagcctcatc cctcccgttc 2280 gttccaaagg cagcatacac cggctgccta tcggggacaa acgttcaacc tgtgcaattt 2340 gggaacctaa aagccagggc agcacacaaa attgggctgc cactggttgg catgacccag 2400 gacgggggag aggacacacg gatctgcacg ctagacgacg cagcagacca cgccttcgac 2460 agcatggagt caacagtcac ccgcccagag agcgtcggac accaggctgc atttcagggc 2520 tggttctact gcggagcagc tgacgaggaa accattgaag agcttgagga ctttctcgac 2580 agcatagaac tacattcaaa gcccaccgtc gaacaaccgc aaacagaaga ggcaatggag 2640 ctcctaatgg agctggccag gaaggaccca caaatgagca agatactagt catacttggg 2700 tgggtggaag gggcaggcct catcgatgcc ctatacaact gggcccagct tgacgacggc 2760 ggagtgcgaa tgagaaacat gctgaggaac ctgccacatg agggctccaa gtcccaacga 2820 aggaaacacg gccccgcacc agagagcaga gaatcaacca gaatggaggt gctgagacgg 2880 gaggcggccg caaaaagaaa gaaggcccaa cggatcagcg aagacgccat ggacaacgga 2940 tttgagttcg caactattga ctgggttctg gagaacggct caaggggccc aaaccccgca 3000 caagccaagt actacaaagc aacaggcctt gacccagaac ccggactgac cgaattccta 3060 ccggaaccga cccatgcacc tgaaaacaag gcggcaaaac tagcagccac catctacggg 3120 tcacccaacc aggccccagc accaccagag tttgtagaag aagttgcagc agttctaatg 3180 gaaaacaacg gaagaggccc caaccaagcc caaatgagag agctaagact gaaagcattg 3240 accatgaaat caggtagcgg agccgctgcc acgttcaagc ccagaaacag acgaccagca 3300 caggaatacc aaccacgccc cccgataaca tcaagggcag ggaggttcct caacatcagt 3360 acgactctga gctagaactg cggatggggt gccccaacac cccaaccagc agcggcgtct 3420 ttcgcccaa 3429 //