ID AJ457823; SV 1; circular; genomic DNA; STD; VRL; 2730 BP. XX AC AJ457823; XX DT 25-APR-2002 (Rel. 71, Created) DT 15-APR-2005 (Rel. 83, Last updated, Version 6) XX DE Tomato yellow leaf curl China virus-[Y64] complete genome, isolate Y64 XX KW AC1 gene; AC2 gene; AC3 gene; AC4 gene; AV1 gene; AV2 gene; coat protein; KW complete genome; precoat protein; Rep protein; KW replication enhancer protein; transcriptional activator protein; KW transcriptional regulator protein. XX OS Tomato yellow leaf curl China virus-[Y64] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2730 RA Zhou X.; RT ; RL Submitted (18-APR-2002) to the INSDC. RL Zhou X., Zhejiang University, Institute of Biotechnology, Kaixuan Road 268, RL Hangzhou, Zhejiang, 310029, CHINA. XX RN [2] RA Peng Y., Xie Y., Zhang Z., Zhou X.; RT "Molecular characterization of Tomato yellow leaf curl China virus and its RT associated satellite DNA infecting Siegesbeckia orientalis"; RL Acta Microbiol. Sin. 44(1):29-33(2004). XX DR MD5; 15a296e4dd8c9d7e6a346bf4c94bb6f9. DR EuropePMC; PMC2170441; 17963488. DR EuropePMC; PMC533896; 15564504. XX FH Key Location/Qualifiers FH FT source 1..2730 FT /organism="Tomato yellow leaf curl China virus-[Y64]" FT /isolate="Y64" FT /mol_type="genomic DNA" FT /country="China:Yunnan" FT /db_xref="taxon:221525" FT CDS 129..476 FT /gene="AV2" FT /product="precoat protein" FT /db_xref="GOA:Q777N2" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:Q777N2" FT /protein_id="CAD30050.1" FT /translation="MWDPLLNEFPETVHGFRCMLAIKYLQLVENTYSPDTLGYDLIRDL FT ISVIRARDYGEASRRYSHFHSRLEGASPAELRQPLYGSCCCPHCPRHQKTNVVKQAHVS FT EAHDVPDVQKP" FT CDS 289..1059 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:Q8QL01" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q8QL01" FT /protein_id="CAD30051.1" FT /translation="MAKRPADIVISTPASKVRRRLNFDSPYTGRAVAPTVRVTRRQMWS FT NRPMYRKPMMYRMYRSPDVPRGCEGPCKVQSYEARHDVSHTGKVICVSDVTRGNGITHR FT VGKRFCIKSIYVIGKIWMDENIKVKNHTNTVMFFLVRDRRPSGTPMDFQQVFNCYDNEP FT STATVKNDLRDRFQVRRKFFSTVTGGQYACKEQALVKRFIRVNTHVVYNHQEQAKYENH FT TENALLLYMVSTHASNPVYATLKVRIYFYDSQMN" FT CDS complement(1056..1460) FT /gene="AC3" FT /product="replication enhancer protein" FT /db_xref="GOA:Q8QL00" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q8QL00" FT /protein_id="CAD30052.1" FT /translation="MDSRTGELLTATQSENGVYIWTVKNPLYFKITKHHERPFLRNHDI FT ITLQVQFNYNLRKALGIHKCFLTCQIWTHLHPQTSHFLRVFKYQFLKYLDRLGVISINN FT CIRAFRYVLYDVLNGTIDVIENHDIKFNIY" FT CDS complement(1201..1605) FT /gene="AC2" FT /product="transcriptional activator protein" FT /db_xref="GOA:Q8QKZ9" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q8QKZ9" FT /protein_id="CAD30053.1" FT /translation="MRSSSPSTGHSTQVPIKVQHRIAKKTTRRRRVDLPCGCSYFVALG FT CHNHGFTHRGTTHCNSIREWRVYLDGQKSPIFQDNQTPRETISEEPRHHHITSPIQLQP FT EESVGDTQMFSNLPNLDSFTSSDLAFLKSI" FT CDS complement(1508..2593) FT /gene="AC1" FT /product="Rep protein" FT /function="associated with replication" FT /db_xref="GOA:Q8QKZ8" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q8QKZ8" FT /protein_id="CAD30054.1" FT /translation="MAPPNKFRINAKNYFLTYPHCSLTKEEALSQIQTLETPVNKLFIR FT ICRELHEDGTPHLHVLIQFEGKFQCKNQRFFDLTSPHRSAHFHPNIQGAKSSTDVKSYM FT EKDGDVLDHGVFQIDGRSARGGCQSANDAYAEAINSGSKASALNILREKAPKDFVLQFH FT NLNSNLDRIFTPPMEEYISPFSSSSFDQVPEELDEWAVDNVVSAAARPLRPVSIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWFNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEYLEEEKNSALRNWAVKNAIFVTLNGPL FT YSGSYQGATPNRQEDNQTTTS" FT CDS complement(2143..2436) FT /gene="AC4" FT /product="transcriptional regulator protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:Q777N1" FT /protein_id="CAD30055.1" FT /translation="MGLLTCMFSSNSKESSNVKIKDSSISHPHTGQHISIRTFRELKAQ FT QMSNPTWKKTETCLIMEFSRSMEDRLEEVANLPTTHMPRQSIQGPKLRPSIY" XX SQ Sequence 2730 BP; 724 A; 537 C; 610 G; 859 T; 0 other; accggatggc cgcgcgattt ttttaaagtg gtccccatgt gcgcgtttgt ccaataatat 60 gcgctcctca aagcttagtt atgaaatggt cccctataaa acttagcccc cacgtattta 120 tgttaaagat gtgggatcca ttgcttaatg agttccctga aaccgtgcac ggttttaggt 180 gtatgttagc aattaagtat ttgcagttag tcgaaaatac atactctccc gatacattag 240 gttacgattt aatccgtgat ttaatttcag ttatccgtgc tagagactat ggcgaagcgt 300 cccgccgata tagtcatttc cactcccgcc tcgaaggtgc gtcgccggct gaacttcgac 360 agcccctata cgggtcgtgc tgttgccccc actgtccgcg tcaccagaag acaaatgtgg 420 tcaaacaggc ccatgtatcg gaagcccatg atgtaccgga tgtacagaag ccctgatgtt 480 ccaagggggt gtgaaggccc ttgtaaagtt caatcttatg aggcccgtca tgatgtgtcg 540 catacgggta aggttatttg tgtatcggat gttactcgtg gtaatggaat tactcaccgt 600 gttggtaaga ggttctgtat taaatccatt tacgtcattg ggaagatatg gatggacgag 660 aatattaaag tgaagaatca cacgaatact gtaatgtttt tccttgttag agatcgacgt 720 cctagtggta cacctatgga ttttcaacaa gtgtttaatt gttatgacaa tgaacccagc 780 actgccactg taaaaaacga tttaagggat cgttttcaag ttcgtcgtaa attcttttct 840 acggttacgg gcggacagta tgcgtgtaag gagcaggctt tggtgaagag attcattcgt 900 gttaacactc atgttgtgta caaccatcaa gaacaggcga agtacgagaa tcatactgag 960 aatgcattat tgttgtatat ggtttctact catgcgagta atcctgtata tgcgactttg 1020 aaagtccgca tctatttcta tgattcacaa atgaattaat aaatattgaa ttttatatca 1080 tgattttcaa ttacatctat tgttccattc aatacatcgt ataatacata tctaaaagcc 1140 ctaatacaat tgttaatgct aatcacgcct aatctatcta aatatttaag aaattggtat 1200 ttaaatactc ttaagaaatg cgaggtctga ggatgtaaat gagtccagat ttggcaggtt 1260 agaaaacatt tgtgtatccc caacgctttc ctcaggttgt agttgaattg gacttgtaat 1320 gtgatgatgt cgtggttcct cagaaatggt ctctcgtggt gtttggttat cttgaaatat 1380 aggggatttt tgaccgtcca gatatacacg ccattctctg attgagttgc agtgagtagt 1440 tccccggtgc gtgaatccat gattgtgaca gcctaaagca acgaagtatg aacagccaca 1500 aggtagatca actcgtcgtc gtctggttgt cttcttggcg attcggtgtt gcaccttgat 1560 aggaacctga gtagagtggc ccgttgaggg tgacgaagat cgcattcttt actgcccagt 1620 ttcgaagtgc ggaattcttt tcctcttcta gatactcttt atagctggaa ttgggtcctg 1680 gattgcagag gaagatagtg gggatcccgc ctttaatttg aactggtttt ccgtatttgg 1740 tgttgctttg ccagtccctt tgggccccca tgaattcttt aaagtgcttt aagtagtgcg 1800 gatctacgtc atcaatgacg ttgaaccaag catcattact gtataccttt gggcttagat 1860 ctaaatgacc acacaaataa ttatgtggtc ctaatgacct ggcccacatc gtcttccccg 1920 ttctactatc accctctatg actatactta ccggtcttaa aggccgcgca gcggcactca 1980 caacattatc gaccgcccat tcatcaagtt cttcgggaac ttggtcaaaa gaagaggaag 2040 aaaaaggaga aatatattcc tccattggag gagtaaaaat cctatctaaa ttactattta 2100 aattatgaaa ttgtaaaaca aaatctttag gagccttctc ccttagtata ttgagggccg 2160 aagctttgga ccctgaattg attgcctcgg catatgcgtc gttggcagat tggcaacctc 2220 ctctagccga tcttccatcg atctggaaaa ctccatgatc aagcacgtct ccgtcttttt 2280 ccatgtagga tttgacatct gttgagcttt tagctccctg aatgttcgga tggaaatgtg 2340 ctgacctgtg tggggatgtg agatcgaaga atctttgatt tttacattgg aactttcctt 2400 cgaattggat gagaacatgc aggtgaggag tcccatcttc gtgtagttct ctacagattc 2460 tgatgaatag tttatttact ggggtttcta gggtttgaat ttgggaaagt gcctcttctt 2520 tagtgagaga gcagtgtgga tatgttaaga aataattctt ggcatttatt ctgaatttat 2580 ttgggggagc cattgactgg tcaatcggtg tctctcaaac ttggctatgc aaatggtgtc 2640 tggggtctta tttatatgtg gacaccaaat ggcattatcg taattcccaa aaggaattca 2700 aaattcaaaa gcggccatcc gtataatatt 2730 //