ID AJ439690; SV 2; linear; genomic RNA; STD; VRL; 7975 BP. XX AC AJ439690; XX DT 27-MAR-2002 (Rel. 71, Created) DT 03-NOV-2003 (Rel. 77, Last updated, Version 2) XX DE Cucurbit yellow stunting disorder virus p5, Hsp70h, p6, p59, p9, cp, CPm DE and p26 genes, genomic segment RNA2 XX KW coat protein; coat protein minor; cp gene; CPm gene; KW heat shock protein 70 homologue; Hsp70h gene; hydrophobic-rich protein; KW p26 gene; p5 gene; p59 gene; p6 gene; p9 gene. XX OS Cucurbit yellow stunting disorder virus OC Viruses; Riboviria; Closteroviridae; Crinivirus. XX RN [1] RC revised by [3] RA Coutts R.H.A.; RT ; RL Submitted (22-MAR-2002) to the INSDC. RL Coutts R.H.A., Biological Sciences, Imperial College, Sir Alexander Fleming RL Building, Imperial College Road, London SW7 2AZ, UNITED KINGDOM. XX RN [2] RX DOI; 10.1023/A:1015372331039. RX PUBMED; 12086142. RA Livieratos I.C., Coutts R.H.A.; RT "Nucleotide sequence and phylogenetic analysis of Cucurbit yellow stunting RT disorder virus RNA 2"; RL Virus Genes 24(3):225-230(2002). XX RN [3] RP 1-7975 RA Coutts R.H.A.; RT ; RL Submitted (30-OCT-2003) to the INSDC. RL Coutts R.H.A., Biological Sciences, Imperial College, Sir Alexander Fleming RL Building, Imperial College Road, London SW7 2AZ, UNITED KINGDOM. XX DR MD5; 1ff073ea5610cff57760f3b1a7e6087a. DR EuropePMC; PMC3889241; 24426308. XX FH Key Location/Qualifiers FH FT source 1..7975 FT /organism="Cucurbit yellow stunting disorder virus" FT /segment="RNA2" FT /host="Cucumis sativus" FT /mol_type="genomic RNA" FT /country="Spain:Almeria" FT /db_xref="taxon:51330" FT CDS 1178..1303 FT /gene="p5" FT /product="hydrophobic-rich protein" FT /db_xref="GOA:Q8QMD8" FT /db_xref="UniProtKB/TrEMBL:Q8QMD8" FT /protein_id="CAD29116.1" FT /translation="MYKNFSTIIFQFVCSRVKSWRRLVWSLVLLSLLSAVMLMVL" FT CDS 1234..2895 FT /gene="Hsp70h" FT /product="heat shock protein 70 homologue" FT /db_xref="GOA:Q777N4" FT /db_xref="InterPro:IPR013126" FT /db_xref="InterPro:IPR018181" FT /db_xref="InterPro:IPR029047" FT /db_xref="UniProtKB/TrEMBL:Q777N4" FT /protein_id="CAD29117.2" FT /translation="MAKAGLEFGTTFSTISSYVNGVMKVLKLNETEFIPTCLAITSNND FT VVVGGPAQVLSNSDMPNCYFYDLKRWVGVDSINYNVIKTKINPAYVTELRGNDVYITGI FT DRGYTCTYTVKQLILLYIETLVRLFSKVESITITSLNVSVPADYKCKQRMFMKSVCDSL FT GFSLRRIINEPSAAAIYFVSKYPQYNNFLMYDFGGGTFDSSLIVRDGKYVTVADTEGDS FT FLGGRDIDNAIADYITTTYGMKGGLSADVLASIKEDCNSKGRENFNVIDSSGKLHNVKF FT TRQDLSRCIEPFSKKSIALLDNMVVRNITKDSAVFMVGGSSLLKKVQHDVMNYCARTKL FT ECIIDKDLRSAVSFGCSMSHAQEDTKNMIYIDCNSHPLMGISYFCSPKIIVRKPVAIPY FT TGVREETLTRHYTTILNVYEGSDPFVLNNDWLISANMQSNKYGEIGDTLQYLYKYNVDG FT ILELVVRNKRTGKETVLPIPLLLTESIKKLDVNLTQLSNIDELATLVAIMSYYKPELKY FT LLTYVKTPTIFENEIKKFGSGEDLYKSLAALNKNFK" FT CDS 2902..3066 FT /gene="p6" FT /product="p6 protein" FT /db_xref="GOA:Q777N5" FT /db_xref="UniProtKB/TrEMBL:Q777N5" FT /protein_id="CAE53632.1" FT /translation="MSLIIVIYSFCDGINIHYCSDRRDFEGDHQVRQLDNLQDLCEILL FT THPFYKTSW" FT CDS 3060..4616 FT /gene="p59" FT /product="p59 protein" FT /db_xref="GOA:Q8QMD7" FT /db_xref="InterPro:IPR004909" FT /db_xref="UniProtKB/TrEMBL:Q8QMD7" FT /protein_id="CAD29118.1" FT /translation="MVNLIDSPNLHDAFSLLFKARDVKGKIESLVKYIKSDLSTVNASA FT FRPIGGVRGLVYDSKFSIFQGNVRFNIDDDKSILKCISVYFYHVDPSLLKKTAYKPESF FT FITDNWREHLEKWRKYIDMTMNEYLVDNKDVGCTYTEKEIKNHYPGQSDIRLITLYRVC FT NSQGRLVPLQEFLSSEIKGFDIKTDDAGPTIAEGLGGNDLFKECLVAFKDYVKLNSSKA FT GLEKIKVNQRYFSVYLDSMNSNNDLKNISDNPLVLAKFMLDFDNLTSSTVGFAANIDAI FT KKLDVNFKAFCEKVFNLKTRLSEDKLFINMPKNSVVEVLGQPISIGNYIRSSKIPPPVS FT NSSSLPEHIDELVSKAMCDFMSQFGEFESKFVLDGLLFVFGKLTTNEKFWRSDKLVSFS FT IDKKPISFRACDFRSYLIGSVKSRDVLFNCDNIIRQWANHRGNRAMRLFKVSGFKPGLF FT STVPNILPWMRFDFFKLLSSDYLDDDEIKSLRTLRLMTEHKSNKTKADEHRFTTWISQR FT L" FT CDS 4595..4834 FT /gene="p9" FT /product="p9 protein" FT /db_xref="GOA:Q8QMD6" FT /db_xref="UniProtKB/TrEMBL:Q8QMD6" FT /protein_id="CAD29119.1" FT /translation="MDLTTVIDKFGVEKVEVYLKLYNQIRMERGGVSNFLLRLIDTKVK FT KFLDHDTKMDYNDEETIELLQCLSSFVNMIPSYY" FT CDS 4927..5682 FT /gene="cp" FT /product="coat protein" FT /db_xref="GOA:Q9WMZ6" FT /db_xref="InterPro:IPR002679" FT /db_xref="UniProtKB/TrEMBL:Q9WMZ6" FT /protein_id="CAD29120.1" FT /translation="MASSSENKTSKDDTKIISEHVEDESDNETKGVTKKDIDGDNKSTY FT NPRDLITADHMDPTKLKDIKVFSNRADVMSDQDEATFAKCMKDFATIVFGKEPDEKEFL FT TFYISLVQCWLNQSTSMKNAKQMNLTNTLMHGDQKKTWRTADFINYVKGNLPHVPNPFR FT QYARAHEHEIEILKATGKVTVDHHLQAKHGVLPQFWNVPADYVNGSLMNISEDDLAANL FT LMKCQALKRNEKEKKYYNVSQLAPGGCGN" FT CDS 5682..7061 FT /gene="CPm" FT /product="coat protein minor" FT /db_xref="GOA:Q8QMD5" FT /db_xref="UniProtKB/TrEMBL:Q8QMD5" FT /protein_id="CAD29121.1" FT /translation="MDREDFIDVGSDDLNTRRNGVLWCQSFNANVNKLKKFELKYIYTD FT RLNLSLFTLQLKFKLSRGNVLYEIRFNDPKSRNFKQVGLTWWSNAFEKLDSAKPNRIGY FT ISTILIFPEGNDLIFSVNGFRFVKLFKSFDPTDLVISLTHPIQDIQIENAKDYCSNHVP FT WESVFMSCDLDNESIIPKSVNCYALDLNTNNVKSLEKLAAIDISQVKSSKDLNVREKSD FT EVKPKPKPKEDDSTEKKDERSKDGSDQTENKQKKEADEKKNPSEEPKTDPTVEEKPREV FT NSKLKGVERYPINRQELKKVFEEAVEHYVKGGFSRSQAELIIFQMGVSFCTSKNSIGDI FT HSHLLWEKEDGKIVRVRKGEHVKMLYSFVRTPCNIERAMLRMYSSQIFKLLKDGVLVPG FT WSHVKRRNFKEECAYMACDFYDFSSIKLSEQEKLAANSAQNYVLLKDKHKRSIVNVNQL FT W" FT CDS 7066..7752 FT /gene="p26" FT /product="p26 protein" FT /db_xref="GOA:Q8QMD4" FT /db_xref="UniProtKB/TrEMBL:Q8QMD4" FT /protein_id="CAD29122.1" FT /translation="MEFPTNDIEHIQEDGEDFPAIISKNLNSVLNAIQNHSLYDMIMLD FT NAIETCYTLIIMCQKLYEDVNLYRATNPRTESFRNASVNVNTILNNKDKLFPKLSSWQI FT DDLVKQLIPILNFLKDSKTKIMNDLRVNNLFSVYRINDVRSLLTSLQTFLTSYYNFGRN FT TVPEFSLYIDDSEKLEKLIKGYKSKRYLTKSVRNELVNYFSNNLVYQISFLFDNIGINI FT KPIKNF" XX SQ Sequence 7975 BP; 2651 A; 1277 C; 1632 G; 2415 T; 0 other; gaaatactac ggtaaatcca ttgggatacg gccagacagc cttcctccca ctccaccccc 60 ccctctcttc taatgaagag tattagatat ggtaaacttt aaaccaatat cgtgacacta 120 tgtgtcccgg ttgttccagc aagttggtac tggagccatg tctaatattt agatttagac 180 ccatctatat atatatgtat atgtatatat tagattagtt tattcataca taaacataac 240 acaacacaaa caaaatcagc atatgtgagt accttaaact aggctaggct agacaagctt 300 cggttgattg cattatcaca taggtgcatc aacaaactgg tggttgccac agtggagacg 360 aactccgaag gcagccgacc accttgttgt gaagagcccc gtttaagccc ccccatatat 420 gttgattagt actttccaaa tcaaacggtt ttatggttaa aatttttact ataaacctag 480 tctgagatga taagattcaa gggctgtgat tgggcaagtt ggtactcaag aacttttagt 540 catgattcaa tatgatttga atacgcttgt tgtgttgtag taaaagaact cttttcaaac 600 actacgctgt cacgttaatc accgagtttc aaaaggaaaa atcttagtag tgatgttttg 660 ccttcccaac gagtgttggt agtcacggat cgaagagatc gacatcacac actgagatgt 720 tcgttagata caaagtgatt aatcgtgagt gttcgaattg atgttttgtg tttatatatg 780 tagctcatgt acaaaattct ggctctgcag ttttcaagct ccttaagact taaagccact 840 gggcttaatg tgggagaagt tctcctagtg taagagatga actccgtgcg ctcgttaggt 900 accggataac tcagagtgtt ggttctgaga aggagtgtct gaaggttata tccagaagtt 960 tgtattgagt aaaaaataaa ctaatcgttg tttttaataa gaataggcgt agtttagtta 1020 gtcataggtt catttatggt agattatact ataagcttcc tcgtctctta ggtttagggc 1080 cgtggataag tcagcaagtt ggcactgata gatctattgt gattgatcca ttgttctaac 1140 tagtccacgt cctgttcttt agcttttgtt taaatatatg tataaaaatt tttctactat 1200 tatttttcaa tttgtgtgct ctagagtcaa atcatggcga aggctggttt ggagtttggt 1260 actactttct ctactatcag cagttatgtt aatggtgtta tgaaagtttt gaaattgaac 1320 gaaactgaat ttatccctac ctgtttagcc ataacgtcta ataatgatgt ggttgttgga 1380 ggtcccgctc aagtattgtc taatagtgac atgcctaact gttactttta tgacttgaaa 1440 aggtgggtag gtgttgacag tatcaattat aatgtgataa aaaccaaaat caatccagcg 1500 tatgtcaccg agttacgtgg taacgacgtg tacatcactg gtatcgatag aggttatacc 1560 tgcacttaca cagtcaaaca attgatattg ttatacattg aaactttagt aagattgttt 1620 tctaaagttg agtccataac cataactagt cttaacgtct ctgttccagc tgattataaa 1680 tgtaagcagc gtatgtttat gaaatcagtt tgtgacagtc taggtttttc attacgtaga 1740 attataaacg aaccatctgc agcagctata tactttgttt caaagtatcc gcagtataac 1800 aacttcctga tgtatgactt cggaggagga acttttgatt cttctctaat agtcagagac 1860 ggtaagtatg tcacagtggc tgatactgaa ggtgattcgt ttttgggagg tagagacatt 1920 gataatgcta tcgctgacta tataacaacg acgtatggta tgaaaggtgg tttgtccgct 1980 gacgtactgg cgtctataaa ggaggattgt aattctaagg gtagagagaa tttcaatgtt 2040 atagattcat caggcaaact tcataatgtg aaattcacaa gacaagatct gagtcgttgc 2100 attgaacctt tctctaagaa gagcatagca ctgcttgata atatggtagt gcgtaacata 2160 acaaaagatt ccgctgtgtt tatggttgga ggttcatcat tgttgaagaa agttcaacat 2220 gatgtgatga attactgtgc taggacgaaa ctagaatgca tcattgataa agaccttaga 2280 tcagcagtgt catttggttg ctctatgtca catgcccaag aagacacaaa aaatatgata 2340 tacatcgatt gtaattcaca tcccttaatg ggcatatcat atttttgttc tccaaagatt 2400 atagttagga aacctgtggc cataccttat actggagtgc gagaagaaac cttaacaaga 2460 cactatacaa caattttgaa cgtttacgag ggatcagatc ccttcgtttt gaacaacgat 2520 tggttgatta gtgccaatat gcagtccaac aagtacggtg agataggtga tacattacaa 2580 tatctttaca aatataatgt agatggcatc ttagagttgg ttgtgaggaa taaaagaaca 2640 ggtaaggaga cggtacttcc aattcctttg cttttgactg agagtataaa gaagctggat 2700 gtaaatctaa ctcaattgtc aaatattgat gaattggcaa ctttggtagc tattatgagt 2760 tactataagc ctgaattaaa gtacctcctg acttatgtaa agacaccaac tatttttgaa 2820 aatgaaatta agaaatttgg atctggtgaa gatttatata aatccttagc tgctctgaat 2880 aaaaatttca agtaaatttg gatgtcatta attatagtta tatattcatt ttgtgacggt 2940 attaatatac attattgtag tgatagacgt gattttgaag gtgatcacca agttaggcaa 3000 ttagacaacc ttcaagactt gtgcgagata ttgctgactc acccctttta taaaacttca 3060 tggtgaatct gatagatagt cccaatttac atgatgcttt ctctttatta ttcaaagcaa 3120 gagatgttaa aggaaaaatt gaaagtttgg tgaaatacat aaaatccgat ctctccactg 3180 tcaatgcgtc tgcttttaga cccatcggtg gtgtacgagg tttggtgtat gattcaaaat 3240 tttctatttt tcaaggtaat gttcggttta acatagatga cgataaatcc atcctgaagt 3300 gtatttcagt atacttctat cacgtggatc cgtctcttct gaagaaaacc gcttataagc 3360 cagaatcctt tttcatcaca gacaactgga gagaacatct tgagaaatgg cgaaaatata 3420 tcgacatgac aatgaacgag tatttggtcg ataacaagga tgtgggttgt acatacaccg 3480 aaaaggagat caagaatcat tacccagggc aaagtgatat cagattaata actctatatc 3540 gggtgtgtaa ttcacaaggc aggttagttc ctctgcagga gtttctttct agtgagatca 3600 aaggatttga catcaaaacc gacgacgctg gtcctaccat cgcagaaggt ttaggtggaa 3660 atgatttgtt taaggagtgc ttagtggctt ttaaggatta tgttaaactg aacagttcta 3720 aagctggtct tgaaaagatc aaggtcaacc aaagatattt ttcagtttac cttgactcca 3780 tgaatagcaa taacgatcta aaaaatatct ctgacaatcc tttggttcta gcgaagttca 3840 tgttggattt tgacaattta acatcatcta cagttggttt cgcagctaat attgatgcta 3900 ttaaaaaatt ggacgtgaac tttaaggcat tttgtgaaaa ggtttttaac ttaaaaaccc 3960 gtttaagtga agacaaatta ttcataaata tgcctaagaa ctctgttgta gaagtccttg 4020 gacagcccat atcaattggg aattatatta gatcatcaaa gattccaccc ccagtgtcca 4080 attctagctc tcttcctgaa cacatagatg aattggtgtc taaagccatg tgtgatttta 4140 tgtcgcaatt tggtgaattc gaaagtaaat ttgttttgga cggtctactt ttcgtttttg 4200 gtaaattaac cacgaatgaa aagttttggc gttctgacaa actcgtgtcg ttttcaatag 4260 acaaaaaacc gatatcattt cgagcatgtg attttagaag ttatctcatc ggttcggtaa 4320 agtcaagaga tgtgttattc aattgtgaca acatcatcag acaatgggcg aatcatagag 4380 gtaatagagc tatgagatta ttcaaagtga gtggcttcaa acctggattg tttagcacag 4440 ttccaaacat actaccctgg atgagattcg atttcttcaa actgttgtca agtgattatc 4500 ttgacgatga tgagatcaag tcgcttcgaa ctctacgtct tatgaccgag cataagtcga 4560 ataagactaa ggctgacgaa cacagattca cgacatggat ctcacaacgg ttatagacaa 4620 atttggagta gaaaaggttg aagtgtatct taagttatat aatcaaatta gaatggagag 4680 agggggggtg agcaattttt tgttgagatt gatcgacaca aaggtcaaaa aatttttgga 4740 tcatgatact aagatggatt acaatgatga agagacaatt gaactactgc aatgtttgtc 4800 atcatttgtc aatatgattc catcttatta ctaaaatctc tggatcgttc tcattatcgg 4860 atgaagtagt tttgcaagaa gatactacat ttgaaataag aattttagtg cagctatcaa 4920 acaatcatgg cgagttcgag tgagaataaa acttccaaag atgatacaaa aattataagt 4980 gaacacgtgg aagatgagtc tgacaatgaa acaaagggtg tgacaaagaa agatatcgat 5040 ggtgataaca aatccaccta caatcctagg gatctgatca ccgcagatca catggatcca 5100 acgaaattga aagacatcaa ggtcttttca aatagagcag atgtgatgag tgatcaagat 5160 gaagcaacct ttgctaagtg catgaaagat tttgcaacca tagtttttgg aaaagaacct 5220 gacgagaaag aattcttaac cttttacata agcttggttc aatgttggtt aaaccagagc 5280 acgtcaatga agaacgccaa acagatgaat ctgaccaaca cactcatgca cggtgaccaa 5340 aagaagacat ggaggacggc tgactttatc aattatgtta aggggaacct tccacacgtg 5400 cccaacccgt ttcgacaata cgccagggct catgaacatg aaattgagat actgaaggca 5460 acaggaaagg tcactgttga ccatcatctt caagcgaaac atggggtatt accgcagttt 5520 tggaatgttc cagcagatta tgtcaatggt tcgttaatga acatatccga agacgatttg 5580 gcagccaatc tgttgatgaa atgccaggct ttgaaaagaa acgagaaaga aaagaaatat 5640 tataacgtgt cacaattagc accaggtggc tgtggtaatt gatggatagg gaagatttta 5700 tagatgtggg atctgatgac ttaaacacta ggagaaacgg tgtcctatgg tgtcagtcgt 5760 tcaatgcaaa cgtcaacaaa ttgaagaaat ttgagttgaa atacatatac actgatagac 5820 tgaatttaag cttatttacc ttgcagttga agtttaagct aagtcgtggg aatgtgttat 5880 atgaaatcag atttaatgat cctaagtctc gcaactttaa acaagtgggc ttaacttggt 5940 ggtcaaatgc gtttgaaaaa ttagattccg caaaaccgaa tcgcatcggc tatatcagta 6000 caatacttat ctttccggaa ggtaatgatc tgatattttc agtgaacggt ttcaggtttg 6060 tgaaactctt caaatctttt gatccaacag atttggtgat atcactcaca catccaatcc 6120 aagacattca gattgagaat gctaaggatt actgttctaa tcatgtacct tgggagagtg 6180 tgttcatgtc atgtgatcta gacaatgaaa gtattatccc aaaatcggtg aattgctacg 6240 ccttagacct taatacgaac aatgtcaaat ctttagagaa acttgcggca attgatatat 6300 cacaagtaaa atcgagtaaa gatctgaacg ttcgggaaaa gtcggatgag gtgaaaccaa 6360 aacccaaacc aaaagaggat gatagtactg aaaagaaaga tgagaggtcc aaagatggat 6420 ctgaccaaac tgagaacaaa caaaagaagg aagccgatga gaagaaaaat ccatcggaag 6480 aaccaaaaac agacccaaca gtggaagaaa aacctaggga ggtaaattcc aagttgaagg 6540 gggtagaaag ataccccata aacagacaag aattaaagaa ggtttttgag gaggctgttg 6600 agcattatgt aaagggaggt tttagtagaa gtcaagctga attgataata tttcagatgg 6660 gcgtctcatt ttgtactagc aaaaattcca tcggtgatat tcattctcac ttgttatggg 6720 aaaaggagga tggtaagatt gtgagagtga gaaaagggga gcatgtaaaa atgttatatt 6780 cgtttgtaag aacgccttgt aacattgaac gtgctatgtt gagaatgtat agctcacaaa 6840 tcttcaaact attaaaggat ggagtacttg ttcctgggtg gtctcatgtt aaaagaagaa 6900 atttcaagga ggagtgtgcc tatatggcct gcgacttcta tgatttctct tctattaaat 6960 tgtcggagca agagaagtta gcggcaaatt cggcacaaaa ttatgtcttg ttaaaggaca 7020 aacacaagcg ttctattgta aatgtgaatc aattgtggtg ataaaatgga gtttccgacc 7080 aatgacattg aacatattca agaagatgga gaggattttc cagcaatcat ttccaaaaat 7140 ttgaattcag tgttgaacgc cattcagaat cacagtctat atgatatgat catgttagac 7200 aacgcaatag aaacttgtta tacgttaata attatgtgcc aaaagcttta cgaggatgtg 7260 aatctatata gggccacaaa tcctaggact gaaagcttta ggaacgctag tgttaatgta 7320 aacacaatat taaacaataa ggataaattg ttccctaagt tatcaagctg gcaaattgat 7380 gacctggtta aacaattaat tccgattttg aattttctga aggattcaaa aacaaaaata 7440 atgaacgatt tgagggtaaa taatctattc tccgtataca gaattaatga tgttaggagt 7500 ttgttaacaa gcttacaaac tttcttaact tcatactata attttgggag aaatacagtt 7560 cctgaatttt cattgtatat agatgacagt gagaagttgg aaaaactgat taaagggtat 7620 aaatccaaaa gatacctaac taaatcagtc aggaatgaat tggttaatta tttctcaaat 7680 aatttagtgt atcaaatatc atttctattt gataacatag gaataaatat aaaaccaata 7740 aaaaattttt agggagaaaa acttaaaaac acaaaaaata aggcgttttt gattattagt 7800 ttcgtcttag agtctgccac cggctatcaa gctgagagtg gtatataaaa tctcaaaaat 7860 aacgatgact ttataattag ttatatagga agaattttct atttttatcg agtcgacact 7920 ctaaagtgtt ccaagaggaa ccaccttgag tgtctagtta taaataaact aggtc 7975 //