ID AJ436992; SV 1; circular; genomic DNA; STD; VRL; 2753 BP. XX AC AJ436992; XX DT 14-MAY-2004 (Rel. 79, Created) DT 25-JUN-2004 (Rel. 80, Last updated, Version 2) XX DE Papaya leaf curl virus complete genome XX KW C2 gene; C3 gene; C4 gene; cp gene; V1 gene; Rep gene; coat protein; KW complete genome; replication associated protein. XX OS Papaya leaf curl virus OC Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; OC Geplafuvirales; Geminiviridae; Begomovirus. XX RN [1] RP 1-2753 RA Briddon R.W.; RT ; RL Submitted (22-FEB-2002) to the INSDC. RL Briddon R.W., Disease and Stress Biology, John Innes Centre, Colney Lane, RL Norwich, Norfolk, NR4 7UH, UNITED KINGDOM. XX RN [2] RX DOI; 10.1007/s00705-003-0149-y. RX PUBMED; 14551819. RA Mansoor S., Briddon R.W., Bull S.E., Bashir A., Hussain M., Saeed M., RA Zafar Y., Malik K.A., Fauquet C., Markham P.G., Bedford I.D.; RT "Cotton leaf curl disease is associated with multiple monopartite RT begomoviruses supported by single DNA beta"; RL Arch. Virol. 148(10):1969-1986(2003). XX DR MD5; 667882365676baa30104087bb537b00b. DR EuropePMC; PMC2974675; 20958988. XX FH Key Location/Qualifiers FH FT source 1..2753 FT /organism="Papaya leaf curl virus" FT /mol_type="genomic DNA" FT /country="Pakistan" FT /isolation_source="cotton" FT /tissue_type="leaf" FT /db_xref="taxon:53260" FT CDS 52..504 FT /gene="V1" FT /product="V1 protein" FT /db_xref="GOA:Q6KF69" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:Q6KF69" FT /protein_id="CAD24673.1" FT /translation="MTYGPIRIVPHNLIVCVVPPINLVRKLCFPFTMWDPLLNEFPETV FT HGFRCMLAVKYLQLVENTYSPDTLGYDLIRDLISVIRARNYVEATSRYNHFHARFEGTP FT PSQLRQPIREPCCCPHCPRHQSKSMGEPAHEQKAQDVQDVQKSRCS" FT CDS 308..1078 FT /gene="cp" FT /product="coat protein" FT /function="encapsidation/insect transmission" FT /db_xref="GOA:Q6KF68" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:Q6KF68" FT /protein_id="CAD24674.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYVSRVAAPIVRVTKAKAWA FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCVSDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNVHRDRYQVLRKWYATVTGGQYASKEQALVKKFIRVNNYVVYNQQEAGKYENH FT SENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT CDS complement(1075..1479) FT /gene="C3" FT /product="C3 protein" FT /db_xref="GOA:Q6KF67" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q6KF67" FT /protein_id="CAD24675.1" FT /translation="MDSRTGELITAAQAENGVFIWEIQNPLYFKITEHHNRPFLMNRDI FT ITVQIQFNHSLRKALGIHKCFLAFRIWMTSQPPIGRFLRVFKTQVLKYLNNLGIVSINN FT VIRAVDHVLWNVLEHVVYVDQSSSIKFNIY" FT CDS complement(1220..1624) FT /gene="C2" FT /product="C2 protein" FT /db_xref="GOA:Q6KF66" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q6KF66" FT /protein_id="CAD24676.1" FT /translation="MRSSSPSKAHSTQVPIKVQHRLAKKGTRRRRVDLPCGCSYFIALA FT CHAHGFTHRGTHHCSSSREWRVYLGDSKSPVFQDNRAPQQAIPNEQRHHHRPDTVQSQP FT EESVGDTQMFPSLPNLDDLTASDWSFLKGL" FT CDS complement(1527..2612) FT /gene="Rep" FT /product="replication assciated protein" FT /db_xref="GOA:Q6KF65" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q6KF65" FT /protein_id="CAD24677.1" FT /translation="MPRINSFCVNAKNIFLTYPKCPIPKEQMLEILQSINCPSDKLFIR FT VAQEKHQDGSLHIHALIQFKGKSKFRNPRHFDVTHPNNSTQFHPNFQGAKSSSDVKSYI FT EKDSDYIDWGTFQIDGRSARGGQQTANDAAAEALNAGSAEAALAIIREKLPKDFIFQYH FT NLKCNLERIYTPPMEVYVSPFSSSSFDQVPEELEEWAAENVVGDAARANRPISIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNEAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNSALKNWALKNAIFVTLEGPL FT YSGSNQSAAQASQEGDQTSES" FT CDS complement(2198..2455) FT /gene="C4" FT /product="C4 protein" FT /db_xref="GOA:Q6KF64" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:Q6KF64" FT /protein_id="CAD24678.1" FT /translation="MGLCISMPSSSSKVNPSSETPDISMSLTLITPPNSTQTSRELSPA FT LMSSPTSRRTVITSTGAHFRSMEDLQEEVNRQLMMLQQRP" XX SQ Sequence 2753 BP; 753 A; 551 C; 632 G; 817 T; 0 other; acccggatgg gcgcgatttt ttttgtggcc cccacaaagc actaattgac aatgacatat 60 ggaccaatca gaatcgttcc tcataaccta attgtttgcg tggtcccccc tataaactta 120 gtgcgcaagt tgtgttttcc attcaccatg tgggatccgt tattgaacga gtttcccgaa 180 accgttcacg gttttaggtg tatgttagca gttaaatatc tgcagttagt agaaaatacg 240 tattccccag atactctggg atacgattta attagggatt tgatttcagt aataagggct 300 aggaattatg tcgaagcgac cagcagatat aatcatttcc acgcccgctt cgaaggtacg 360 ccgccgtctc aacttcgaca gcccatacgt gagccgtgtt gctgccccca ttgtccgcgt 420 caccaaagca aaagcatggg cgaaccggcc catgaacaga aagcccagga tgtacaggat 480 gtacagaagt ccagatgttc ctagaggatg tgaaggccca tgtaaggttc agtcctttga 540 gtccagacat gatattcagc atataggtaa agtcatgtgt gtcagtgatg ttactcgtgg 600 aactgggctg acccatagag tgggtaagag attttgtgtg aagtctgtgt atgtgttggg 660 taagatctgg atggatgaga acattaagac caagaatcac acgaatagtg tgatgttttt 720 cttagttaga gatcgtagac cagttgataa acctcaagat tttggagagg tgtttaacat 780 gtttgataat gagcccagta cggcgactgt gaagaatgtt catcgtgata ggtatcaagt 840 gctgcgcaaa tggtatgcaa ctgtcaccgg tggacaatac gcttcaaagg aacaagctct 900 tgtgaagaag tttattaggg ttaataatta tgttgtgtat aaccagcaag aagctggcaa 960 gtatgaaaat cattctgaga atgcgttaat gttgtatatg gcatgtactc atgcctctaa 1020 cccagtgtat gctactttga agatacggat ctatttctat gattccgtga caaattaata 1080 aatattgaat tttattgaag atgattggtc tacatataca acatgctcta atacattcca 1140 taatacatga tcaactgctc taattacatt attaatactg acaattccta agttatttaa 1200 gtacttaagc acttgggtct taaagaccct taagaaacga ccaatcggag gctgtgaggt 1260 catccagatt cggaaggcta ggaaacattt gtgtatcccc aacgctttcc tcaggctgtg 1320 attgaactgt atctggacgg tgatgatgtc tctgttcatt aggaatggcc tgttgtggtg 1380 ctctgttatc ttgaaataca ggggattttg aatctcccag ataaacacgc cattctctgc 1440 ttgagctgca gtgatgagtt cccctgtgcg tgaatccatg ggcgtggcaa gctaatgcta 1500 tgaagtatga acacccacaa gggagatcaa ctctccgacg tctggtcccc ttcttggcta 1560 gcctgtgctg cactttgatt ggaacctgag tagagtgggc cttcgagggt gacgaagatc 1620 gcattcttta aagcccaatt tttgagtgca gaattcttct cttcgtccaa aaactcctta 1680 tagcttgaat tgggtcctgg attacagagg aagatagtgg gaatgccacc tttaatttga 1740 actggctttc cgtactttgt atttgattgc cagtcccttt gggcccccat gaattcttta 1800 aagtgcttta ggtagtgggg atcgacgtca tcaatgacgt tgtaccaggc ctcattactg 1860 tacacctttg gacttaagtc taaatgacca cacaaatagt tatgtggacc cagtgaccta 1920 gcccacattg ttttgcccgt tctgctatca ccctctatga ctatacttat tggtctattg 1980 gcccgcgcag cgtcaccgac aacattctcg gcagcccact cttcaagttc ttctggaact 2040 tgatcaaaag aagaagaaga aaaaggagaa acataaacct ccatcggagg tgtataaatc 2100 ctttctaaat tacattttaa attatgatat tgaaaaataa aatctttagg gagtttttcc 2160 ctaattattg ctaaagcagc ttcagccgaa cctgcgttta gggcctctgc tgcagcatca 2220 ttagctgtct gttgacctcc tcttgcagat cttccatcga tctgaaatgt gccccagtcg 2280 atgtaatcac tgtccttctc gatgtaggac ttgacatcag agctggactt agctccctgg 2340 aagtttgggt ggaattgggt ggagttatta gggtgagtga catcgaaatg tctggggttt 2400 cggaacttgg atttaccttt gaactggatg agggcatgga tatgcagaga cccatcttgg 2460 tgtttttctt gtgccactct gataaataat ttatcagatg ggcaatttat tgactgaaga 2520 atttcgagca tttgctcttt gggtattggg catttgggat aagtaaggaa gatatttttg 2580 gcattaacac aaaaagagtt aatacgaggc atattgaatt ggggacactc aaaactctga 2640 ggaatggggg actccgggga cgcatttata tggcgtcccc caatggcttt ttcgtaatta 2700 cgaaagaaat ttcaaaatcc taacgctcca aaagcgggca tccgtataat att 2753 //