ID   AJ429078; SV 1; linear; genomic RNA; STD; VRL; 803 BP.
XX
AC   AJ429078;
XX
DT   29-JAN-2003 (Rel. 74, Created)
DT   29-JAN-2004 (Rel. 78, Last updated, Version 2)
XX
DE   Tobacco mosaic virus cp gene for capsid protein, genomic RNA, strain
DE   vulgare
XX
KW   capsid protein; cp gene.
XX
OS   Tobacco mosaic virus
OC   Viruses; Riboviria; Virgaviridae; Tobamovirus.
XX
RN   [1]
RP   1-803
RA   Willingmann P.;
RT   ;
RL   Submitted (28-JAN-2002) to the INSDC.
RL   Willingmann P., Abteilung Pflanzenschutz, Institut fuer Angewandte Botanik,
RL   Ohnhorststr.18, 22609 Hamburg, GERMANY.
XX
RN   [2]
RX   DOI; 10.1016/S0166-0934(02)00135-0.
RX   PUBMED; 12367724.
RA   Letschert B., Adam G., Lesemann D.E., Willingmann P., Heinze C.;
RT   "Detection and differentiation of serologically cross-reacting
RT   tobamoviruses of economical importance by RT-PCR and RT-PCR-RFLP";
RL   J. Virol. Methods 106(1):1-10(2002).
XX
DR   MD5; 124594f959dca6b2cf47375bc9c54b10.
DR   EuropePMC; PMC3458214; 22122784.
DR   RFAM; RF01114; TMV_UPD-PK1.
DR   RFAM; RF01115; TMV_UPD-PK2.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..803
FT                   /organism="Tobacco mosaic virus"
FT                   /strain="vulgare"
FT                   /mol_type="genomic RNA"
FT                   /country="Germany"
FT                   /db_xref="taxon:12242"
FT   CDS             232..711
FT                   /gene="cp"
FT                   /product="capsid protein"
FT                   /db_xref="GOA:Q77LT8"
FT                   /db_xref="InterPro:IPR001337"
FT                   /db_xref="InterPro:IPR036417"
FT                   /db_xref="PDB:2OM3"
FT                   /db_xref="PDB:2XEA"
FT                   /db_xref="UniProtKB/TrEMBL:Q77LT8"
FT                   /protein_id="CAD22075.1"
FT                   /translation="MSYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVV
FT                   QRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLVTALLGAFDTRNRIIEVENQANPT
FT                   TAETLDATRRVDDATVAIRSAINNLIVELIRGTGSYNRSSFESSSGLVWTSGPAT"
XX
SQ   Sequence 803 BP; 247 A; 151 C; 187 G; 218 T; 0 other;
     cgttgatgag ttcgtggaag atgtccctat gtcaatcagg cttgcaaagt ttcgatctcg        60
     aaccggaaaa aagagtgatg tccgtaaagg gaaaaatagt agtagtgatc ggtcagtgcc       120
     gaacaagaac tatagaaatg ttaaggattt tggaggaatg agttttaaaa agaataattt       180
     aatcgatgat gattcggagg ctactgtcgc cgaatcggat tcgttttaaa tatgtcttac       240
     agtatcacta ctccatctca gttcgtgttc ttgtcatcag cgtgggccga cccaatagag       300
     ttaattaatt tatgtactaa tgccttagga aatcagtttc aaacacaaca agctcgaact       360
     gtcgttcaaa gacaattcag tgaggtgtgg aaaccttcac cacaagtaac tgttaggttc       420
     cctgacagtg actttaaggt gtacaggtac aatgcggtat tagacccgct agtcacagca       480
     ctgttaggtg cattcgacac tagaaataga ataatagaag ttgaaaatca ggcgaacccc       540
     acgactgccg aaacgttaga tgctactcgt agagtagacg acgcaacggt ggccataagg       600
     agcgcgataa ataatttaat agtagaattg atcagaggaa ccggatctta taatcggagc       660
     tctttcgaga gctcttctgg tttggtttgg acctctggtc ctgcaacttg aggtagtcaa       720
     gatgcataat aaataacgga ttgtgtccgt aatcacacgt ggtgcgtacg ataacgcata       780
     gtgcttttcc ctccacttaa ata                                               803
//