ID AJ429071; SV 1; linear; genomic RNA; STD; VRL; 5962 BP. XX AC AJ429071; XX DT 29-MAR-2002 (Rel. 71, Created) DT 15-APR-2005 (Rel. 83, Last updated, Version 3) XX DE Zucchini yellow mosaic virus polyprotein gene, strain A, genomic RNA XX KW polyprotein. XX OS Zucchini yellow mosaic virus OC Viruses; Riboviria; Potyviridae; Potyvirus. XX RN [1] RP 1-5962 RA Choi S.; RT ; RL Submitted (29-JAN-2002) to the INSDC. RL Choi S., Graduate School of Biotechnology, Korea University, 5 ga 1, RL Anam-dong Sungbuk-ku, Seoul, 136-701, SOUTH KOREA. XX RN [2] RA Choi S.K., Yoon J.Y., Ryu K.H., Choi J.K., Park W.M.; RT "Molecular characterization of a novel strain of Zucchini yellow mosaic RT virus"; RL Unpublished. XX DR MD5; 1b34e31103384fb43e7b5aef35b1aef1. DR EuropePMC; PMC3784902; 24426289. XX FH Key Location/Qualifiers FH FT source 1..5962 FT /organism="Zucchini yellow mosaic virus" FT /host="Altheae rosea" FT /strain="A" FT /mol_type="genomic RNA" FT /country="South Korea:Seoul" FT /db_xref="taxon:12232" FT CDS <1..>5748 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:Q8QKU4" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001592" FT /db_xref="InterPro:IPR001650" FT /db_xref="InterPro:IPR001730" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR011492" FT /db_xref="InterPro:IPR013648" FT /db_xref="InterPro:IPR014001" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR039560" FT /db_xref="UniProtKB/TrEMBL:Q8QKU4" FT /protein_id="CAD22062.1" FT /translation="GLEDIESLEDDKRLTIDFDINTNEAQSSTTFDVHFDDWWNRQLQQ FT NRTVPHYRTTGKFLEFTRNTAAFVANEIASSSEGEFLVRGRVGSGKSTSLPAHLAKKGK FT VLLLEPTRPLAENVSRQLAGDPFFQNVTLRMRGLSCFGSSNITVMTSGFAFHYYVNNPH FT QLMEFDFVIIDECHVTDSATIAFNCALKEYNFAGKLIKVSATPPGRECDFDTQFAVKVK FT TEDHLSFHAFVGAQKTGSNADMVQHGNNILVYVASYNEVDMLSKLLTERQFSVTKVDGR FT TMQLGKTTIETHGTSQKPHFIVATNIIENGVTLDVECVVDFGLKVGRRTGQRNRCVRYN FT KKSVSYGERIQRLGRVGRSKPGTALRIGHTEKGIETIPEFIATEAAALSFAYGLPVTTH FT GVSTNILGKCTVKQMKCALNFELTPFFTTHLIRHDGSMHPLIHEELKQFKLRDSEMVLN FT KVALPHQFVSQWMDQSEYERIGVHVQCHESTRIPFYTNGVPDKVYEKIWKCIQEHKNDA FT IFGKLSSACSTKVSYTLSTDPAALTRTIAIIDHLLAEEMIKRNHFDTISSAVTGYSFSL FT AGIADSFRKRYMRDHTAHNIAILQQARAQLLEFNSKNVNINNLSDLEGIGVIKSVVLQS FT KQEVSNFLGLRGKWDGRKFSNDVILAIMTLLGGGWFMWEYFTKKINEPVRVESKKRRSQ FT KLKFRDAYDRKVGREIFGDDDTIGRTFGEAYTKRGKVKGNNSTKGMGRKTRNFVHLYGV FT EPENYSFIRFVDPLTGHTLDESTHTDISLVQEEFGSIREKFLENDLISRQSIINKPGIQ FT AYFMGKGTEEALKVDLTPHVPLLLCRNTNAIAGYPERENELRQTGTPVKVSFKDVPEKN FT EHVELESKSIYKGVRDYNGISTIVCQLTNDSDGLKETMYGIGYGPIIITNGHLFRKNNG FT TLLVKSWHGEFTVKNTTTLKVHFIEGKDVVLVRMPKDFPPFKSNASFRAPKREERACLV FT GTNFQEKSLRSTVSESSMTIPEGTGSYWIHWISTNEGDCGLPMVSTTDGKIIGVHGLAS FT TVSSKNYFVPFTDDFIATHLSKLDDLTWTQHWLWQPSKIAWGTLNLVDEQPGPEFRISN FT LVKDLFTSGVETQSKRERWVYESCEGNLRAVGAAQSALVTKHVVKGKCPFFEEYLQTHA FT EASAYFRPLMGEYQPSKLNKEAFKKDFFKYNKPVTVNQLDHDKFLEAVDGVIRMMCDFE FT FNECRFITDPEEIYNSLNMKAAIGAQYRGKKKEYFEGLDDFDRERLLFQSCERLFNGYK FT GLWNGSLKAELRPLEKVRANKTRTFTAAPIDTLLGAKVCVDDFNNEFYSKNLKCPWTVG FT MTKFYGGWDKLMRSLPDGWLYCHADGSQFDSSLTPALLNAVLIIRSFYMEDWWVGQEML FT ENLYAEIVYTPILAPDGTIFKKFRGNNSGQPSTVVDNTLMVVISIYYACMKFGWNHEDI FT ENKLVFFANGDDLILAVKDEDSGLLDNMSSSFYELGLNYDFSERTHKREDLWFMSHQAM FT LVDGMYIPKLEKERIVSILEWDRSKEIMHRTEAICAAMIEAWGHTELLQEIRKFYLWFV FT EKEEVRELAALGKAPYIAETALRKLYTDKGAETSELARYLQALHQDIFFEQGDTVMLQS FT GTQPTAADAGATKKDKEDDKGKNKDVTGSGSGEKTVAAVTKDKDVNAGSHGKIVPRLSK FT ITKKMSLPRVKGKVILDIDHLLEYKPDQIELYNTRASHQQFSSWFNQVRTEYDLNEQQM FT GVVMNGFMVWCIENGTSPDINGVWFMMDGDEQVEYPLKPIVENAKPTLRQIMHHFSDAA FT EAYIEMRNAEAPYMPRYGLLRNLRDRSLARYAFDFYEVNSKTPERAREAVAQMKAAALS FT NVSSRLFGLDGNVATTSEDTERHTARDVNRNMHTLLGVNTMQ" FT mat_peptide 1..1902 FT /product="CI protein" FT /experiment="experimental evidence, no additional details FT recorded" FT mat_peptide 1903..2061 FT /product="6K2 protein" FT mat_peptide 2062..2631 FT /product="VPg protein" FT mat_peptide 2632..3360 FT /product="NIa protease" FT mat_peptide 3361..4911 FT /product="NIb protease" FT mat_peptide 4912..5748 FT /product="coat protein" FT mat_peptide 5749..5962 FT /product="3' untranslated region" XX SQ Sequence 5962 BP; 1857 A; 1144 C; 1414 G; 1547 T; 0 other; ggacttgaag acattgagag cttggaggac gataaaagac tcacaattga ttttgatatt 60 aacacaaatg aggctcaatc gtcgacaaca tttgatgttc attttgatga ttggtggaat 120 cggcagctac agcaaaatcg cacagttcca cattacagga ccacaggtaa atttcttgaa 180 tttaccagaa atactgcagc atttgtggcc aatgaaatag catcatcaag tgagggagag 240 ttcttagtta gaggacgagt aggttctgga aaatcaacga gcttacctgc acatcttgcc 300 aagaagggta aggtgttact actcgaacct acacgccctt tggcggagaa tgttagtaga 360 cagttagcag gtgatccttt ctttcaaaac gttacactca gaatgagagg gttaagttgt 420 tttggttcaa gcaatattac agtgatgacg agtggatttg cttttcacta ctatgttaac 480 aatccacatc aattgatgga atttgacttt gtcatcatag acgagtgcca tgtcacagac 540 agtgcgacca tagctttcaa ttgtgcactt aaagagtaca actttgctgg caaattgatt 600 aaagtgtctg caacgccgcc agggagagag tgcgatttcg atacgcaatt cgcggtgaaa 660 gtcaaaacag aggaccatct ttcattccat gcattcgttg gcgcacagaa gactggttca 720 aatgctgaca tggttcagca tggtaataac atacttgtgt atgttgcaag ttacaacgaa 780 gtggacatgc tctctaagtt actcactgag cgccaatttt cagttacaaa ggtagatggg 840 cgaacaatgc agcttggaaa aactaccatt gaaacgcatg gaactagcca aaagccccat 900 ttcatagtag ctacaaacat catcgagaat ggagtgacgt tggatgttga gtgtgttgtt 960 gattttggac taaaagtggg tcgcagaact ggacagcgaa atcggtgtgt gcgctacaat 1020 aagaaatcag ttagttatgg agagaggatt cagcgactag gaagagtggg gagatctaag 1080 cctggaactg cattgcgtat agggcacaca gaaaaaggca tcgaaaccat tcctgaattc 1140 attgccacag aagcagcagc cttatcattt gcatatgggc ttccagtcac cacacatgga 1200 gtttccacaa atatacttgg aaagtgcaca gttaaacaga tgaaatgtgc tttgaacttt 1260 gagctaactc ctttcttcac cactcattta atccgtcatg atggtagtat gcatccacta 1320 atacacgaag aattgaagca gttcaaactc agggattcag aaatggtgct caacaaggtt 1380 gcattacctc atcaatttgt gagccaatgg atggatcaaa gtgagtatga acgaattgga 1440 gtgcacgttc aatgccatga gagcacgcgt atacctttct acacaaatgg agtacctgac 1500 aaagtctatg agaaaatttg gaagtgcata caagaacaca agaatgatgc gatttttggt 1560 aagctttcaa gtgcttgttc gactaaggta agttatacac tcagcactga tccagcagca 1620 ttaaccagaa ctattgcaat cattgaccac ctgctcgccg aggaaatgat aaagcggaat 1680 cactttgaca cgatcagctc agccgtcacg ggatattcat tttccctcgc tggaattgct 1740 gactcttttc ggaaaagata tatgcgcgat cacacagcac acaacattgc aatactccaa 1800 caagcacgtg ctcagctgct tgaatttaat agcaaaaatg tgaacatcaa caacctgtcc 1860 gatctagaag gaattggagt cattaagtcg gtggtgttgc aaagtaagca agaggtcagc 1920 aacttcctag gacttcgtgg taaatgggat ggacggaaat tttcgaatga tgtgatattg 1980 gcgattatga cactcctagg aggtggatgg ttcatgtggg aatatttcac gaaaaagatc 2040 aatgaacccg tgcgcgttga aagcaagaaa cgccgatctc aaaagttgaa attcagagat 2100 gcgtacgata ggaaagtcgg acgtgagatt tttggcgatg atgatacaat cgggcgtact 2160 tttggtgagg cttacacgaa gagaggaaaa gtcaaaggaa acaacagtac aaagggaatg 2220 ggacggaaaa ctcgcaattt tgtgcaccta tatggtgtgg agcctgagaa ttacagtttt 2280 atcagatttg tggatcctct cactggccat acattggacg aaagcaccca taccgacata 2340 tcgttagtgc aagaggagtt tggaagcatt agagaaaaat ttctggagaa tgatttgatt 2400 tcgaggcagt ctattatcaa caaacccggg attcaggcat atttcatggg caagggtact 2460 gaagaagcac tcaaggttga tttgactcct catgtaccat tgcttctatg cagaaacacc 2520 aatgccattg cggggtatcc agagagagaa aatgaattga gacagactgg cacaccagtc 2580 aaagtctctt ttaaagacgt tccagagaaa aacgaacatg tcgagttgga gagcaaatct 2640 atctataaag gagtgcgcga ttataatggc atctcaacaa tcgtctgtca attaacgaat 2700 gattctgatg gcctcaagga aactatgtat ggtattggtt atgggccgat aatcatcact 2760 aatgggcacc tcttcaggaa aaacaatggc acacttctag tcaagtcttg gcatggtgaa 2820 ttcactgtga aaaataccac aacgctgaaa gtgcatttca tagaagggaa ggatgttgta 2880 ttagtgcgca tgccaaagga ctttccaccg tttaagagca acgcttcttt tagggcgcca 2940 aaacgcgagg aacgagcatg cttggttgga acaaacttcc aagaaaagag tctccgctcc 3000 actgtctcag aatcttccat gacaatacct gaaggaactg gttcatattg gattcattgg 3060 atttcaacca acgaagggga ttgcggatta cccatggtat caacaacgga tggcaaaata 3120 attggagttc atggtttggc ctctacagtc tcatctaaga attattttgt cccattcact 3180 gacgatttca tagccacgca cttgagcaaa cttgatgatc tcacatggac tcaacattgg 3240 ctatggcaac ctagtaaaat cgcgtgggga acgctcaact tagttgatga acaaccaggg 3300 cctgaatttc gcatttcaaa tttagtcaag gacttattca cctctggtgt tgaaacgcag 3360 agcaagcgag aaagatgggt ttacgaaagc tgtgaaggaa acctgcgagc tgttggagct 3420 gcacaatcag cgttagttac caaacatgtt gtaaagggca agtgtccttt cttcgaagaa 3480 tatttgcaaa cacacgcaga agcgagcgct tattttagac ccctaatggg agagtaccaa 3540 ccgagcaagc taaacaaaga ggctttcaaa aaggatttct ttaaatacaa taaacccgtc 3600 actgtaaatc aattggatca cgataaattt ttggaagcag tggatggggt tatacgtatg 3660 atgtgcgact ttgagttcaa cgaatgtcga ttcattacag atcccgagga aatctacaac 3720 tctttgaata tgaaagcagc aattggagcc caatatagag gaaagaagaa agaatatttt 3780 gaagggctag atgattttga tcgagagcga cttttatttc agagttgtga aaggttgttt 3840 aatggctaca aaggcctgtg gaatggatct ttaaaggctg agctcagacc acttgagaaa 3900 gttagggcta acaaaacacg aacctttaca gcagcgccaa tcgacacact gcttggagct 3960 aaagtttgcg tggatgattt caacaatgaa ttctacagca aaaacctcaa gtgtccatgg 4020 acggttggca tgacaaaatt ttatggtggt tgggataaat tgatgagatc attacctgat 4080 ggttggttat attgtcatgc tgatggatca cagtttgata gttcattaac tccagcctta 4140 ctgaatgcag tgctcataat caggtcattt tatatggagg attggtgggt tggccaagag 4200 atgcttgaaa atctttatgc tgaaattgtg tacactccaa ttcttgctcc ggatggaact 4260 attttcaaga aatttagagg taacaacagt gggcaaccct cgacggttgt ggataacaca 4320 ctaatggttg tgatctctat ttattacgcg tgcatgaaat ttggttggaa tcacgaggac 4380 attgagaaca aacttgtctt ctttgcaaat ggagatgatc tgatactcgc agtcaaagat 4440 gaagacagtg gcttacttga taacatgtca tcctctttct atgaactcgg actaaattac 4500 gatttttcag aacgtacgca caaaagagaa gatctttggt tcatgtccca tcaagcaatg 4560 ttggttgatg gaatgtatat tccaaaactc gagaaagaga gaatcgtttc aattctagag 4620 tgggatagaa gcaaagaaat catgcaccga acagaggcta tttgcgctgc gatgattgag 4680 gcatgggggc acaccgagct tttgcaagaa atcagaaagt tttacctatg gttcgttgag 4740 aaagaggaag tgcgagaatt agctgccctc ggaaaagctc catacatagc tgagacagca 4800 cttcgcaagt tatatactga caaaggagcg gaaacaagtg aattggcacg ctacctacaa 4860 gccctccatc aagatatctt ctttgaacaa ggagacaccg taatgctcca atcaggcact 4920 cagccaactg cggcagacgc tggggccaca aagaaagaca aagaggatga caaagggaaa 4980 aacaaggatg ttacaggctc cggctcaggt gagaagacag tagcagctgt cacgaaggac 5040 aaggatgtga acgctggttc tcatgggaaa attgtgccgc gtctttcgaa gatcacaaag 5100 aagatgtcac tgccacgcgt gaaaggaaaa gtcatactcg atatcgatca tttgctggaa 5160 tataagccgg atcaaattga gttgtataac acacgagcgt ctcatcagca attttcctcc 5220 tggtttaatc aagttagaac agaatatgat ttgaatgagc aacagatggg agttgtaatg 5280 aatggtttca tggtttggtg cattgaaaat ggcacttcgc ctgatatcaa tggagtgtgg 5340 ttcatgatgg atggagatga gcaggtcgag tatcctttga aaccaatagt cgaaaatgca 5400 aagccaacgc tgcgacaaat aatgcatcac ttctcagatg cagcggaggc atacatagaa 5460 atgagaaatg cagaggcacc atacatgccg aggtatggtt tgcttcgaaa tctacgggat 5520 aggagtttgg ctcgatacgc tttcgacttc tacgaagtca attctaaaac tcctgaaaga 5580 gcccgcgaag ctgttgcgca gatgaaagca gcggctctta gcaatgtttc ttcaaggttg 5640 tttggccttg atggaaatgt tgccaccact agcgaagaca ctgaacggca cactgcacgt 5700 gatgttaata gaaacatgca caccttgctg ggtgtgaaca caatgcagta aagggtaggt 5760 cgcctaccta ggttatcgtt tcgctgtcga tgtaattcta atatttaccg ctttatgtga 5820 tgtctttaga tttcccgagt gggcttccca cctttaaagc gtaaagttta tgttagttgt 5880 ccaggaatgc cgtagtcctg tcggaagctt tagtgtgagc ctctcacgaa taagctcgag 5940 gttagactcc gtttgcaagc ct 5962 //